mRNA_H-paniculata_contig21799.5764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21799.5764.1
Unique NamemRNA_H-paniculata_contig21799.5764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21799.5764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21799contigH-paniculata_contig21799:1149..1478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929594.6629639-CDS-H-paniculata_contig21799:1148..14781622929594.6629639-CDS-H-paniculata_contig21799:1148..1478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21799 1149..1478 +
1691480928.067485-CDS-H-paniculata_contig21799:1148..14781691480928.067485-CDS-H-paniculata_contig21799:1148..1478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21799 1149..1478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21799.5764.1prot_H-paniculata_contig21799.5764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21799 1149..1478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21799.5764.1

>prot_H-paniculata_contig21799.5764.1 ID=prot_H-paniculata_contig21799.5764.1|Name=mRNA_H-paniculata_contig21799.5764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MKRGGQQSSGSGAGQQGSRPTVTVGPRTPAPATARWQGPYTGTRSQAGQH
GTASRAVAVESGATPQTNNKTKGKYMHVPAELTEYVEKMVEIKLSAEGAM
SASGSGEAAP
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mRNA from alignment at H-paniculata_contig21799:1149..1478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21799.5764.1 ID=mRNA_H-paniculata_contig21799.5764.1|Name=mRNA_H-paniculata_contig21799.5764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig21799:1149..1478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAGGAGGACAGCAGAGTTCGGGTTCTGGGGCAGGGCAGCAGGG
TTCGAGACCGACTGTGACGGTCGGGCCACGGACGCCAGCACCGGCAACGG
CCAGGTGGCAAGGCCCGTACACCGGGACCCGATCGCAGGCGGGACAGCAC
GGGACGGCGAGTCGCGCCGTTGCTGTTGAGAGCGGCGCGACGCCGCAGAC
GAACAATAAGACGAAGGGGAAATACATGCATGTTCCAGCTGAGCTAACGG
AATATGTGGAGAAGATGGTGGAAATCAAGCTGAGCGCCGAAGGGGCAATG
TCGGCGAGCGGCTCAGGCGAGGCGGCGCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig21799:1149..1478+

>mRNA_H-paniculata_contig21799.5764.1 ID=mRNA_H-paniculata_contig21799.5764.1|Name=mRNA_H-paniculata_contig21799.5764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig21799:1149..1478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAGAGGAGGACAGCAGAGTTCGGGTTCTGGGGCAGGGCAGCAGGG
TTCGAGACCGACTGTGACGGTCGGGCCACGGACGCCAGCACCGGCAACGG
CCAGGTGGCAAGGCCCGTACACCGGGACCCGATCGCAGGCGGGACAGCAC
GGGACGGCGAGTCGCGCCGTTGCTGTTGAGAGCGGCGCGACGCCGCAGAC
GAACAATAAGACGAAGGGGAAATACATGCATGTTCCAGCTGAGCTAACGG
AATATGTGGAGAAGATGGTGGAAATCAAGCTGAGCGCCGAAGGGGCAATG
TCGGCGAGCGGCTCAGGCGAGGCGGCGCCTATGAAAAGAGGAGGACAGCA
GAGTTCGGGTTCTGGGGCAGGGCAGCAGGGTTCGAGACCGACTGTGACGG
TCGGGCCACGGACGCCAGCACCGGCAACGGCCAGGTGGCAAGGCCCGTAC
ACCGGGACCCGATCGCAGGCGGGACAGCACGGGACGGCGAGTCGCGCCGT
TGCTGTTGAGAGCGGCGCGACGCCGCAGACGAACAATAAGACGAAGGGGA
AATACATGCATGTTCCAGCTGAGCTAACGGAATATGTGGAGAAGATGGTG
GAAATCAAGCTGAGCGCCGAAGGGGCAATGTCGGCGAGCGGCTCAGGCGA
GGCGGCGCCT
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