mRNA_H-paniculata_contig21790.5763.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.610e-58 Identity = 115/214 (53.74%), Postives = 135/214 (63.08%), Query Frame = 3
Query: 141 RGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
R + EE DVPF EVV SLMWIA TR+ ISNAV+AV RHSHE K HW AA KIL L TAHL L F R S+DV + +VDA FA + DRRSV GA + LV W R QK V+ ST E EY+AM DG+KEAL+V G+L RP +K I EDN+GA L NPLS S SKHID++HHFLR L I V HV ++E+
Sbjct: 23 RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV----YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 232
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE) HSP 1 Score: 190 bits (482), Expect = 1.110e-55 Identity = 113/221 (51.13%), Postives = 136/221 (61.54%), Query Frame = 3
Query: 114 ITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTE 764
I SP + R V E+ DVPF EVV LMWIA TR SNAV+ V RHSHE K W AA KIL L+ TAHL L + + ++DV + +VDA FA + DRRSV GA + G LV+WF QK V+LST E EY+AM DG+KEAL+V G+L RP K I FEDN+GA L NPLS S SKHID++HHFLR L I V HV ++
Sbjct: 46 IPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLV----YVDADFASKATDRRSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSK 262
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.800e-55 Identity = 114/223 (51.12%), Postives = 138/223 (61.88%), Query Frame = 3
Query: 114 ITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
I SP + R V E+ DVPF EVV LMWIA TR SNAV+ V RHSHE K W AA KIL L+ TAHL L + + ++DV + +VDA FA + DRRSV GA +L G LV+WF QK V+LST E EY+AM DG+KEA +V G+L RP K I FEDN+GA L NPLS S SKHID++HHFLR L I V HV ++E+
Sbjct: 141 IPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLV----YVDADFASKATDRRSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 359
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5JW47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW47_9PHAE) HSP 1 Score: 187 bits (474), Expect = 3.190e-55 Identity = 112/211 (53.08%), Postives = 130/211 (61.61%), Query Frame = 3
Query: 150 NEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLSS-KHIDIQHHFLRELVANEDIMVKHVSTEEE 770
NEE DVPF EVV LMWIA TR ISNAV+AV RHSHE K HW AA KIL L TAHL LNF R S+DV + +V A FA + DRRSV GA + G LV W R QK V ST E EY+AM DG+KEAL+ G+L RP K I EDN+GA L +NPLS KHID++HHFLR L I + HVS++E+
Sbjct: 3 NEEAG--DVPFREVVGCLMWIACQTRPDISNAVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLV----YVAADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQ 207
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE) HSP 1 Score: 187 bits (474), Expect = 4.890e-54 Identity = 113/223 (50.67%), Postives = 134/223 (60.09%), Query Frame = 3
Query: 114 ITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
I SP + R V E+ DVPF EVV SLMWIA TR ISNA++AVVRHSHE K HW AA KIL L TAHL L F +S+D + +VDA FA + NDRRSV GA +L V W + QK V+ S E EY AM DG+K+AL+V G+L RP I EDN+ A L NPLS S SKHID++HHFLR L I V HV +EE+
Sbjct: 85 IPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNALRAVVRHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLV----YVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 303
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE) HSP 1 Score: 195 bits (496), Expect = 5.020e-54 Identity = 115/223 (51.57%), Postives = 139/223 (62.33%), Query Frame = 3
Query: 114 ITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWG---ILRPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
I SP + R V E+ DVPF EVV LMWIA TR SNAV+ V RHSHE K W AA KIL L+ TAHL L + + ++DV + +VDA FA + DRRSV GA +L G LV+WF QK V+LST E EY+AM DG+KEAL+V G +LRP K I FEDN+GA L NPLS S SKHID++HHFLR L I V HV ++E+
Sbjct: 481 IPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLV----YVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 699
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.420e-53 Identity = 122/265 (46.04%), Postives = 154/265 (58.11%), Query Frame = 3
Query: 9 IGCDSYLRSAPIHLLPLSWDN-------KDTFIHHRGLPARIITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
+GC+ Y+R + +S ++ + + +PA + R + EE DVPF EVV SLMWIA TR+ ISNAV+AV RHSHE K HW AA KIL L TAHL L F R S+DV + +VDA FA + DRRSV GA + LV W R QK V+ ST E+EY+AM DG+KEAL+V G+L RP +K I EDN+GA L NPLS S SKHID++HHFLR L I V HV ++E+
Sbjct: 911 LGCE-YIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDD-----RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV----YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 1165
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 187 bits (474), Expect = 1.660e-53 Identity = 100/215 (46.51%), Postives = 136/215 (63.26%), Query Frame = 3
Query: 132 LELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALY---VWGILRPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTE 764
++L +E DVPF E+V SLMW+A TR I+NAV+AV R+ K +HW AA IL ++ T+ +G+ F R V + + FVDA +A + DRRSV G ++CGG VTWF R QK VTLST E EYVA+AD LKE L+ VW + P I FEDN+GA ++ +NP++ S SKHID++HHF+RELV ++I + HV T+
Sbjct: 139 VKLTDFDENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFER----GVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQ 349
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.740e-53 Identity = 117/223 (52.47%), Postives = 137/223 (61.43%), Query Frame = 3
Query: 114 ITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
I SP + R V E+ DVPF EVV SLMWIA TR ISNAV+AV RHSHE K HW AA KIL L TAHL L F +S+D + +VDA FA + NDRRSV GA +L V W + QK V+ ST E EY+AM DG+KEAL+V G+L RP K I EDN+GA L NPLS S SKHID++HHFLR L I V HV +EE+
Sbjct: 716 IPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLV----YVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQ 934
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 196 bits (499), Expect = 2.030e-53 Identity = 122/265 (46.04%), Postives = 153/265 (57.74%), Query Frame = 3
Query: 9 IGCDSYLRSAPIHLLPLSWDN-------KDTFIHHRGLPARIITHSPLLELRGVNEEGTVVDVPF*EVVASLMWIAELTRSHISNAVQAVVRHSHESKGIHWIAACKILECLQATAHLGLNFSRRDSLDVEVKLELDTFVDAGFA*RTNDRRSVLGASILCGGALVTWFFRKQKSVTLSTIETEYVAMADGLKEALYVWGIL---RPKMKFLGISAFEDNKGAKELTNNPLSLS-SKHIDIQHHFLRELVANEDIMVKHVSTEEE 770
+GC+ Y+R + +S ++ + + +PA + R + EE DVPF EVV SLMWIA TR+ ISNAV+AV RHSHE K HW AA KIL L TAHL L F R S+DV + +VDA FA + DRRSV GA + LV W R QK V+ ST E EY+AM DG+KEAL+V G+L RP +K I EDN+GA L NPLS S SKHID++HHFLR L I V HV ++E+
Sbjct: 1121 LGCE-YIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDD-----RSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLV----YVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQ 1375 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21790.5763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21790.5763.1 >prot_H-paniculata_contig21790.5763.1 ID=prot_H-paniculata_contig21790.5763.1|Name=mRNA_H-paniculata_contig21790.5763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp MADGLKEALYVWGILRPKMKFLGISAFEDNKGAKELTNNPLSLSSKHIDIback to top mRNA from alignment at H-paniculata_contig21790:3..827+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21790.5763.1 ID=mRNA_H-paniculata_contig21790.5763.1|Name=mRNA_H-paniculata_contig21790.5763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig21790:3..827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21790:3..827+ >mRNA_H-paniculata_contig21790.5763.1 ID=mRNA_H-paniculata_contig21790.5763.1|Name=mRNA_H-paniculata_contig21790.5763.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig21790:3..827+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |