mRNA_H-paniculata_contig21783.5758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE) HSP 1 Score: 100 bits (250), Expect = 7.400e-23 Identity = 65/141 (46.10%), Postives = 77/141 (54.61%), Query Frame = 1
Query: 37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNN---------------------------------AGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
AA A+A+ GMAGAH GAR TA + + LK+ALGVLM+AVAPL+PLRD S + AG + P V M AIG GSGFLAGVFGVGGGV+TVP++SL TDL H
Sbjct: 150 AAGAIAVAGMAGAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKDDVSVKERHEEESEERSSADATGLQGGGRLLPTEAGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGH 290
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 2.090e-21 Identity = 67/155 (43.23%), Postives = 81/155 (52.26%), Query Frame = 1
Query: 37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNN--------AGEPILAV--------------------------VFP-----------IPDLSM--VLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
AA A+A+ GMA AH GAR TA + + LK+ALGVLM+AVAPL+PLRD S N A + I + P +P +S V M AIG GSGFLAGVFGVGGGV+TVP++SL TDL H
Sbjct: 66 AAGAIAVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHNKGPCLRPSTAADDIAXXXXXXXXXXXXXXXXXXEATGLLDGGGLIPMEEGGEGTSPSVPGVSSERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGH 220
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S0C0G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0G1_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.020e-19 Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query: 40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLR----DSFSRNNAGEPIL--AVVFPIPD-----LSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
A +A+GGM A +GA AT+++SP LK ALG+ MI V+P+LP + D+F N G A+ D L+ VL ++ IGLGSGFLAG+FGVGGG V VPA+++ TD++H
Sbjct: 160 AAGLALGGMITARLGAGATSKLSPQALKRALGIFMILVSPVLPAKQYIADNFGGINDGTETTQNAIQKESNDSYEERLTKVLPIACIGLGSGFLAGMFGVGGGAVVVPALTIATDMNH 277
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: B7G9A3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A3_PHATC) HSP 1 Score: 88.2 bits (217), Expect = 6.780e-18 Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 1
Query: 1 SWTMNHYFPCRSAATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFS-RNNAGEPILAVVFPIPD--LSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
+W+ H SAA A+A+ GM A +GA T R S + L+ ALGVLM+ +AP +P + + R A E A +P LS L +AIGLGSGFLAG+FGVGGG + VPA++L TD +H
Sbjct: 104 AWSYVHEVQWESAA-AIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAKAYLTQRAEATEASRAEAETMPSEPLSRFLPPAAIGLGSGFLAGLFGVGGGTIVVPALTLATDCTH 225
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S1CXT3_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXT3_CYCTE) HSP 1 Score: 79.3 bits (194), Expect = 5.100e-16 Identity = 48/109 (44.04%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 37 AATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSF-SRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
AA A+A+ GM A +GA T+ +S LK ALG+ M+ VAP++P R S EP + + +L S IGL SGFLAG+FGVGGG + VPA+++ TD++H
Sbjct: 1 AAAAIAVCGMITARIGAATTSILSERTLKQALGIFMLCVAPMVPGRKYILSDKRTVEPSVG---DAGFVKRILAPSLIGLASGFLAGLFGVGGGAIVVPALTVATDMNH 106
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S1VQG5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQG5_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 7.780e-15 Identity = 48/107 (44.86%), Postives = 68/107 (63.55%), Query Frame = 1
Query: 40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
A A+A GM A +GA T ++ L+ ALGV MI VAPL+P R +++ A A + I + ++ AIGLGSG+LAG+FGVGGG + VPA++L TD++H
Sbjct: 113 AAAIAACGMLTARLGAYTTVHLTEKFLQQALGVFMIGVAPLIPAR-AWTLKQAKSTQPADEYDI--YTKIVVPGAIGLGSGYLAGLFGVGGGAIVVPALALGTDMNH 216
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S4VM12_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM12_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.250e-14 Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLR-------DSFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
A A+A+ GM A +GA T +IS S LK LG M+ VAPL+P + + ++N+ E + +L S IGLGSGFLAG+FGVGGG + VPA++L+TD++H
Sbjct: 167 AMALALTGMFTARLGASTTTKISASKLKRLLGFFMLGVAPLVPAKAYIMEAKKNDTKNHDTER--------NRMERLLPASIIGLGSGFLAGLFGVGGGAIVVPALTLSTDMTH 272
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A836CP97_9STRA (Sulfite exporter TauE/SafE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP97_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.720e-14 Identity = 53/133 (39.85%), Postives = 68/133 (51.13%), Query Frame = 1
Query: 49 MAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRN-----NAGEPILAVVFPIPDL------------------------SMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
M + GM + +GA+AT R+ S LK LGV MI +AP++ RD + EP+ + P L S L+M+AIG SGFLAG+FGVGGG VTVPAISL TD +H
Sbjct: 53 MVVAGMVTSTLGAKATGRLKQSTLKRMLGVFMIGIAPVVIFRDQLLEYAHRPVHGEEPLHSNPNPSNQLGGAGGDGGGEHKAVVATAAVERPSSDPLRMAAIGACSGFLAGIFGVGGGAVTVPAISLCTDFTH 185
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A7S4EEL0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL0_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 9.390e-14 Identity = 45/112 (40.18%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRD-----SFSRNNAGEPILAVVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDLSH 360
ATA+A+ GMA A +G A++++S + LK ALG M+ +AP +P ++ + E + + +P + IG SGFLAGVFGVGGG + VPA+SL TD++H
Sbjct: 73 ATAIAVCGMATATLGVHASSKMSQTTLKKALGAFMLLIAPTIPAKEYLISTKVETEESIEHSIVRRYAVP--------AGIGCCSGFLAGVFGVGGGAIVVPALSLFTDMNH 176
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Match: A0A812LAW2_9DINO (YunE protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812LAW2_9DINO) HSP 1 Score: 73.9 bits (180), Expect = 3.870e-13 Identity = 49/124 (39.52%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 40 ATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPLLPLRDSFSRN--------------NAGEPILA-----VVFPIPDLSMVLKMSAIGLGSGFLAGVFGVGGGVVTVPAISLTTDL 354
A A+A+GGM A GA+ A + LKL +G+L +AV+PL+PL+ FS++ + E ILA + D KM +G +GFL+G+FGVGGG +TVPAI+L+T L
Sbjct: 119 ALAIALGGMIFARAGAKLMANTDAARLKLYMGMLQVAVSPLIPLKAHFSKSRPATEEKRVEAPCVDGSESILAGSEARAGHGVFDAERFAKMFVVGSLAGFLSGMFGVGGGALTVPAIALSTSL 242 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21783.5758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21783.5758.1 >prot_H-paniculata_contig21783.5758.1 ID=prot_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp MNHYFPCRSAATAMAIGGMAGAHVGARATARISPSILKLALGVLMIAVAPback to top mRNA from alignment at H-paniculata_contig21783:3511..4297+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21783.5758.1 ID=mRNA_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=787bp|location=Sequence derived from alignment at H-paniculata_contig21783:3511..4297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21783:3511..4297+ >mRNA_H-paniculata_contig21783.5758.1 ID=mRNA_H-paniculata_contig21783.5758.1|Name=mRNA_H-paniculata_contig21783.5758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig21783:3511..4297+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |