mRNA_H-paniculata_contig2171.5738.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2171.5738.1
Unique NamemRNA_H-paniculata_contig2171.5738.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 2.300e-71
Identity = 122/212 (57.55%), Postives = 150/212 (70.75%), Query Frame = 3 
Query:  234 QESDVDITRRRIEELIATKEWRGAVLHCEELELLAGSKGTPFRQEDAHHAKVHMVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLERQSLG 869
            Q +D D  R++IE L+A K++R AV+ CEELE+L  S  TPF Q+    A VH+ LLL L DVNNARHLWRRLP +AKA GGE AALW+VGK +WKR+M+ AQ  LR +EW A + P V+L+  R+ ERQL +I +A+T LPLE  A ML CSV+DAEK C+K+GW V+A   K VKPS     +      TPDYLQKMA HIAFLERQS G
Sbjct:    4 QGTDSDTIRKKIEALVAKKDFRAAVVKCEELEILTAS--TPFGQQHQDAANVHLALLLALDDVNNARHLWRRLPAAAKAAGGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATAEKAVKPSVRLIPDDTIPAATPDYLQKMANHIAFLERQSQG 213
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.430e-27
Identity = 74/186 (39.78%), Postives = 105/186 (56.45%), Query Frame = 3 
Query:  315 CEELELLAGSKGTPFRQEDAHHAKV--HMVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLERQSL 866
            CEELEL   S  TP    DA  A+   H+++ ++L D++NARHLWRR+ +  KA G EL A W+VGK +WKRE++ A   L+ + W A + PL + L E + E +  L+ +AYT + +  AAA LG     A   C  + WT +AG   M+ P    PAE   S      +Q +A H+ FLE+  L
Sbjct:   21 CEELELETCS--TP--NTDAAPARYARHIMVYMILNDLDNARHLWRRIDEGIKAGGSELEATWEVGKLLWKREISAAYAALQ-RTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALGMDEAGALAFCTARNWTADAG-GVMLTPVAPAPAE--PSFEGLQQMQYLAEHVTFLEKSKL 198
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A3B5QHV9_XIPMA (COP9 signalosome complex subunit 8 n=2 Tax=Xiphophorus TaxID=8082 RepID=A0A3B5QHV9_XIPMA)

HSP 1 Score: 112 bits (279), Expect = 2.370e-24
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            + L L+  D+NNAR+LW+R+P + K+   ELAA+W VG+ IW+R+      T+   +W   I+P++  LRE   +R   L++QAYT +  E  AA +G SV++A K  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   62 LALYLLNNDMNNARYLWKRIPQAIKSANPELAAIWAVGQRIWQRDFPGIYTTIAAHQWSENILPVMEALRESSRQRAYSLVAQAYTSITAEDFAAFVGYSVEEAVKGVVSQGWQADPATRMVMPKKPDPPP--VSLVPNEQQLARLTDYVAFLE 213
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A6P7H2E0_9TELE (COP9 signalosome complex subunit 8 n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P7H2E0_9TELE)

HSP 1 Score: 109 bits (273), Expect = 4.800e-24
Identity = 53/154 (34.42%), Postives = 87/154 (56.49%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            + L L+  D+NNAR+LW+R+P + K+   ELAA+W VG+ IW+R+      T+   +W   I+P++  L+E   +R   L++QAYT +  E  AA +G SV++A K  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   19 LALYLLNNDMNNARYLWKRIPQAIKSANPELAAIWAVGQRIWQRDFPGIYTTIAAYQWSENILPVMEALQESTRQRAYGLVAQAYTSITAEDFAAFVGYSVEEAVKGVVSQGWQADPNTRMVMPKKPDPPP--VSLVPNEQQLARLTDYVAFLE 170
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: H2LVX5_ORYLA (COP9 signalosome complex subunit 8 n=4 Tax=Atherinomorphae TaxID=1489913 RepID=H2LVX5_ORYLA)

HSP 1 Score: 110 bits (275), Expect = 5.370e-24
Identity = 55/154 (35.71%), Postives = 87/154 (56.49%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            + L L+  D+NNAR+LW+R+P   K+   EL A+W VG+ IW+R+       +   +W   I+P++  LRER  +R   L++QAYT +  E  AA +G SV++A K  + QGW  +   ++MV P    P   V+       L ++  ++AFLE
Sbjct:   46 LALYLLHNDMNNARYLWKRVPQVIKSANPELTAIWTVGQHIWQRDFPGIYSAIEAHQWSENILPVMEALRERTRQRAYSLVAQAYTSITAEDFAAFVGYSVEEAVKGVVSQGWQADP-TTRMVMPIKPDPPP-VSLVPNEQQLARLTDYVAFLE 197
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A8C4TB74_ERPCA (COP9 signalosome complex subunit 8 n=3 Tax=Polypteridae TaxID=8289 RepID=A0A8C4TB74_ERPCA)

HSP 1 Score: 110 bits (274), Expect = 6.070e-24
Identity = 52/154 (33.77%), Postives = 84/154 (54.55%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            + L L+  D+NNAR+LW+R+P + K    EL A+W VG+ IW+R+      T+   +W   I P++  LRE   +R   L++QAYT +  +  AA +GC VD+A +  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   39 LALYLLHNDMNNARYLWKRIPQALKTANLELGAIWAVGQHIWQRDFPGIYTTIAAYQWSESIQPIMDALREATRQRAFGLVAQAYTSIMADDFAAFVGCPVDEAVQGVVNQGWQADPSTRMVMPKKPDPPP--VSLIPNEQQLARLTDYVAFLE 190
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A1S3NVB6_SALSA (COP9 signalosome complex subunit 8 n=19 Tax=Salmonidae TaxID=8015 RepID=A0A1S3NVB6_SALSA)

HSP 1 Score: 109 bits (273), Expect = 1.020e-23
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            +VL L+  D+NNAR+LW+R+P + K+   EL ALW VG+ IW+R+       +   +W   I+P++  LRE    R   L++QAYT +  E  AA +G SV++A K  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   47 LVLYLLHNDMNNARYLWKRIPQAIKSANPELTALWAVGQRIWQRDFPGIYSAIAAHQWSENILPVMEALRETTRRRAYGLVAQAYTSIMAEDFAAFVGYSVEEAVKGVVSQGWQADPATRMVMPQKPDPPP--VSLVPNEQQLARLTDYVAFLE 198
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A6P3W472_CLUHA (COP9 signalosome complex subunit 8 n=6 Tax=Clupeiformes TaxID=32446 RepID=A0A6P3W472_CLUHA)

HSP 1 Score: 109 bits (272), Expect = 1.120e-23
Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 3 
Query:  393 MVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            + L L+  D+NNAR+LW+R+P + K    ELAA+W VG+ IW+RE      T+   +W   I P++  L+E    R   L++QAYT +  E  AA +G SV+DA K  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   39 LALYLLHNDMNNARYLWKRIPQAIKTANPELAAVWAVGQHIWQREFPGIYSTIAAYQWSEGIGPIMEALQESTRRRAYGLVAQAYTSIMAEDFAACVGYSVEDAVKGVVSQGWQADPNTRMVMPQKPDPPP--VSLVPNEQQLARLTDYVAFLE 190
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A3Q0RI44_AMPCI (COP9 signalosome complex subunit 8 n=3 Tax=Ovalentaria TaxID=1489908 RepID=A0A3Q0RI44_AMPCI)

HSP 1 Score: 108 bits (270), Expect = 1.730e-23
Identity = 53/153 (34.64%), Postives = 86/153 (56.21%), Query Frame = 3 
Query:  396 VLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLE 854
            VL+L+  + NNAR+LW+R+P + K+   ELAA+W VG+ IW+R+       +   +W   I+P++  LRE   +R   L++QAYT +  E  AA +G SV++A K  + QGW  +     ++   P  P   V+       L ++  ++AFLE
Sbjct:   33 VLILMFANRNNARYLWKRIPQAIKSANPELAAIWAVGQRIWQRDFPGIYAAIAAYQWSENILPVMEALRESTRQRAYGLVAQAYTSITAEDFAAFVGYSVEEAVKGVVSQGWQADPNTRMVMPKKPDPPP--VSLVPNEQQLARLTDYVAFLE 183
[Close]
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Match: A0A7S2SPW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPW3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.770e-23
Identity = 75/203 (36.95%), Postives = 111/203 (54.68%), Query Frame = 3 
Query:  267 IEELIATKEWRGAVLHCEELELLAGSKGTPFRQEDAHHAKVHMVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKFIWKR-EMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPLERAAAMLGCSVD-DAEKVCIKQGWTV-EAGVSKMVKPSPSKPAEHVASTTTPDYLQKMARHIAFLERQSL 866
            +EE +   +++ A    EE+EL      +   +    +AK  + L L+L D++NARHLWRR+ DS K  G EL  +  V   +W+R ++  A + LRG EW   + PL + LR+ L +RQL L  +AYT + L  A A LG + D D    C  QGW V EAGV ++ K    +PA  V      + L+ ++ H+  LERQS+
Sbjct:   36 LEEKLRAGDFQAARPIIEEIELRDADAPSTDPRIPIVYAK-QLFLYLILNDMHNARHLWRRIDDSCKTDGSELVKVHAVASLLWQRSDIPGAFNLLRG-EWSETLKPLATALRDGLQKRQLSLFEKAYTSVTLSTATAALGFTSDADTAAACTAQGWHVDEAGVIRVTK----RPAA-VKELQGFEQLEMLSHHVTLLERQSV 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2171.5738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMY2_ECTSI2.300e-7157.55CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=... [more]
A0A7S2FNN9_9STRA1.430e-2739.78Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A3B5QHV9_XIPMA2.370e-2435.06COP9 signalosome complex subunit 8 n=2 Tax=Xiphoph... [more]
A0A6P7H2E0_9TELE4.800e-2434.42COP9 signalosome complex subunit 8 n=3 Tax=Percomo... [more]
H2LVX5_ORYLA5.370e-2435.71COP9 signalosome complex subunit 8 n=4 Tax=Atherin... [more]
A0A8C4TB74_ERPCA6.070e-2433.77COP9 signalosome complex subunit 8 n=3 Tax=Polypte... [more]
A0A1S3NVB6_SALSA1.020e-2335.06COP9 signalosome complex subunit 8 n=19 Tax=Salmon... [more]
A0A6P3W472_CLUHA1.120e-2335.71COP9 signalosome complex subunit 8 n=6 Tax=Clupeif... [more]
A0A3Q0RI44_AMPCI1.730e-2334.64COP9 signalosome complex subunit 8 n=3 Tax=Ovalent... [more]
A0A7S2SPW3_9STRA1.770e-2336.95Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2171contigH-paniculata_contig2171:11486..16565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.8
Seed ortholog evalue7.4e-62
Seed eggNOG ortholog2880.D8LMY2
Preferred nameCOPS8
KEGG koko:K08244,ko:K10655,ko:K12181
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000338,GO:0000715,GO:0001101,GO:0001654,GO:0001745,GO:0001932,GO:0001934,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007250,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0008180,GO:0008233,GO:0008237,GO:0008285,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009753,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010387,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016787,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030182,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031647,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0033674,GO:0034622,GO:0034641,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042461,GO:0042742,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043549,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0046530,GO:0048468,GO:0048471,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048609,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060429,GO:0060562,GO:0060625,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090596,GO:0098542,GO:0140096,GO:1901222,GO:1901224,GO:1901360,GO:1901564,GO:1901700,GO:1902531,GO:1902533,GO:1903320
EggNOG free text desc.COP9 signalosome assembly
EggNOG OGsKOG4414@1,KOG4414@2759
Ec32 ortholog descriptionCOP9 signalosome, subunit CSN8
Ec32 orthologEc-02_004100.1
EC2.3.2.27,2.7.9.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons5
Model size2250
Cds size660
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929591.0868-UTR-H-paniculata_contig2171:11485..128631622929591.0868-UTR-H-paniculata_contig2171:11485..12863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2171 11486..12863 -
1691480926.4722214-UTR-H-paniculata_contig2171:11485..128631691480926.4722214-UTR-H-paniculata_contig2171:11485..12863Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2171 11486..12863 -
1622929591.1860425-UTR-H-paniculata_contig2171:16353..165651622929591.1860425-UTR-H-paniculata_contig2171:16353..16565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2171 16354..16565 -
1691480926.5273895-UTR-H-paniculata_contig2171:16353..165651691480926.5273895-UTR-H-paniculata_contig2171:16353..16565Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2171 16354..16565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929591.1001673-CDS-H-paniculata_contig2171:12863..130241622929591.1001673-CDS-H-paniculata_contig2171:12863..13024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 12864..13024 -
1691480926.4849665-CDS-H-paniculata_contig2171:12863..130241691480926.4849665-CDS-H-paniculata_contig2171:12863..13024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 12864..13024 -
1622929591.119924-CDS-H-paniculata_contig2171:14198..143861622929591.119924-CDS-H-paniculata_contig2171:14198..14386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 14199..14386 -
1691480926.4961798-CDS-H-paniculata_contig2171:14198..143861691480926.4961798-CDS-H-paniculata_contig2171:14198..14386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 14199..14386 -
1622929591.1346595-CDS-H-paniculata_contig2171:14726..148281622929591.1346595-CDS-H-paniculata_contig2171:14726..14828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 14727..14828 -
1691480926.5042374-CDS-H-paniculata_contig2171:14726..148281691480926.5042374-CDS-H-paniculata_contig2171:14726..14828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 14727..14828 -
1622929591.1517327-CDS-H-paniculata_contig2171:15360..154461622929591.1517327-CDS-H-paniculata_contig2171:15360..15446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 15361..15446 -
1691480926.5118775-CDS-H-paniculata_contig2171:15360..154461691480926.5118775-CDS-H-paniculata_contig2171:15360..15446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 15361..15446 -
1622929591.1628754-CDS-H-paniculata_contig2171:16230..163531622929591.1628754-CDS-H-paniculata_contig2171:16230..16353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 16231..16353 -
1691480926.519681-CDS-H-paniculata_contig2171:16230..163531691480926.519681-CDS-H-paniculata_contig2171:16230..16353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2171 16231..16353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2171.5738.1prot_H-paniculata_contig2171.5738.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2171 12864..16353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2171.5738.1

>prot_H-paniculata_contig2171.5738.1 ID=prot_H-paniculata_contig2171.5738.1|Name=mRNA_H-paniculata_contig2171.5738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
MAAPAPVQESDVDITRRRIEELIATKEWRGAVLHCEELELLAGSKGTPFR
QEDAHHAKVHMVLLLVLGDVNNARHLWRRLPDSAKATGGELAALWDVGKF
IWKREMTNAQDTLRGKEWGALIMPLVSLLRERLFERQLELISQAYTCLPL
ERAAAMLGCSVDDAEKVCIKQGWTVEAGVSKMVKPSPSKPAEHVASTTTP
DYLQKMARHIAFLERQSLG*
back to top

mRNA from alignment at H-paniculata_contig2171:11486..16565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2171.5738.1 ID=mRNA_H-paniculata_contig2171.5738.1|Name=mRNA_H-paniculata_contig2171.5738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5080bp|location=Sequence derived from alignment at H-paniculata_contig2171:11486..16565- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGATTAACAGCGGTAGGACCAGAGGGCACTGAGTGAAAGAAAATACT
GTGGCATAGCGCGAGGTATCCGCGATTGAATATTGTTGCTTCTGAACAAC
AAAGTAGTTGGAGAATAACATCGGGATTCTTACCAACTCAAATGTCATTA
TCCAATTCCTTTTCGTACCGTACACCCATCAGCAGCCAGTGAGGAAACAA
GTGGTGCGGTAGATGGCGGCTCCAGCTCCTGTACAAGAGTCCGATGTGGA
CATTACAAGGAGGAGAATTGAGGAGCTTATTGCCACCAAGGAATGGCGAG
GTGCTGTGTTGCACTGTGAAGAGCTTGAGTTGTTGGTGAGTCAACAGCAT
ATGTGATCTTTGGTATACAAAAGTCCCCAAACAGTACTGCGACATCATAA
CGTCGCTGGCGGAAATTTGGTTTCGAGAGTTGGCTAGACGTGAGGCTGTA
CCTGCTTTTGCGTTTTTGATTGAAAATGGCGTTTATCGAAGAAGGTACTT
TCAAGCCGCCATCACCCATTGCAAAAGTGCAAAACAGTCGAAATCACTAT
CCACTATCCACAAACCCATTTTTTATCGTCTGAATTCATTCCGCCGCACA
GCTGGATCGGTCGTCCTCGTAAATACTCAAGATTCAAGATAGCGAGCAAT
GCGGGGCAGCATTTTATTCGTGCTTTGTATTTCATATGCTGTCTATTGTA
TGCAGATGATACATGACGGTGTTAGCAGCTACTAGTAAATGCTAATGAAA
TTCAGCGGTTGTGAAAATGTGTATTCTAACCTATCCTAAATCGAAAACAG
TTGTATAAGTTAGCAGAACTGTTCCGAAAATAGATCGCCTCATCGACCAT
GGTTTGTTAATCTCTTGAGCATAAAGATAACACCAAAAAAATAGAAATTC
GTTCTCCCGTCGGTAATTTCCGGCGTAACCAGCCATTATGAAGCGTAGCG
ACCCGTTGCGCGTGCGACATCATGGCAGCGACTATCAGTTAGGGCAGCGT
AATGCGAAATTTCAAGATAACGCACATGGATACACAAAGTGCATTTTTTC
GCCCTCCAATAGTATCATTTAGCCTAATCAGCCCGTGTGCCCACGTGCTG
TCCTGTGTTTTTTAAGCAGGCAGGGTCAAAGGGTACGCCCTTCAGACAAG
AGGATGCACACCACGCCAAGGTGCACATGGTGCTGCTGCTAGTGCTGGGC
GATGTGTGAGTTATTACTCTTCCTCCATAGACCTAATCATACTTATTAAT
AATTCGGGTATACCTCAGTGCGACCCTTGTAATGGTTTCTTCATATGGTC
CACACCTCGGATGAAGGTCGCAGAGGGTCCATGATGGTCGTCACGGATTT
TTGAACTACGACTGCACTGTGGTGCTTGGCCGTTTCCAGAACCCATTCGA
ATGGATATCTGAAGGTCCTTCGTCATTTAGTGGAGCCTTCGAATTCAAAG
TATAAGCGCATACATACCCACATACTTTTCTACTTTAGAGTATGGAGATT
AGCTAAAAGTCAAAGGTTTGATCTGGGTGTGTTTACTTTGCTTTAAAGAA
ACTTCATCCAACCTATGTGGAATGACCCCTTGGATTCGACCTTCGCCCGG
TCTGCAGCACGATACCCCTCGTGACGGCTTCTCCAAACTTCGTTCGTTTG
TATCGCGCGCTATCGTGGAAGAGAGATAACAAAGCCTCGGCCATGCGGCC
TTTACTCCTCGGTGTTGGCTGCTTATTCTGCAAACAGGAACAACGCTCGG
CACCTGTGGAGAAGGCTTCCAGATTCCGCTAAAGCGACAGGTGGCGAACT
CGCGGCTCTGTGGGACGTAGGGAAGTTCATATGGAAACGGTGAGTGAATA
ATGATTCAAGTGGTTCCGCGTATTCATGCCATGTTTTTTAGACATGGTGA
ATACAGGTAGTTCGCTCGCATGTGTGCATTTCTCCATCGTTGCATCATGT
AGTTAGTTGTTCTTTGCTCAACCGGGCCAAAAGGCAAAGATGTAGTCTCG
ACACTGCCGGTTTCAAATCAGCGCGGCGATGGGGAGTACGACGCCTTACG
GGTTGTCGAGACGTTGAATATTCCGCGCACGTCCCGTAGTGTCTCCGCTT
TCTATTTCGCGCGCCCCTTCCCCCCGTCGCCTACTTCATTTTTGGTGTCG
TCTCTGACCGTGCCTACGTCGTTTCTTAGAGAGATGACGAACGCGCAAGA
CACTTTGCGAGGAAAAGAATGGGGCGCGCTCATAATGCCGCTGGTTTCCC
TGCTTCGAGAGCGCCTATTTGAGCGGCAGCTGGAGCTGATTTCCCAGGCC
TACACCTGCCTGCCGTTGGAGCGCGCCGCGGCTATGCTGGGTTGCAGTGT
CGACGATGCGGAAAAAGGTGTGTGCGTTCATGTTTTTTGTAAACAAGTGT
CGCGCTTGGTCTACTTTGTACAGTAGCTCTCCTTGCGATCGCTCTCCTCA
ACTTTTTTCTCGCGCACGTCCCGTTTGGCTATTCGTCGGTCCATGTGGAC
TCAAGGGATGTTCGGTCCCTGTGACGTATCCTCATGGTGATGGGCAGTTC
GTTTCAGACCAAACTCTGTTCTTTTTGCAACGCTGGTTTCAATGCGTGCA
TGTGTGTTCCTTGCTTTAGTCTGCACATGGATCCTTCTGGTCCGCCTGCC
GGGCGTCATATTCCTACAGCCCGGTTACCAGATGGGCATTGAAATGGGTA
TGCAGAAAAACTCCTTTACAACACTTGTGGGAACTATCCCTTTCTATAAG
ATATATTTTAAACATCCCCCGGCCCTCCAAAGGGATACCCGGTTCGACCG
TCTGAAGGTGAGGGTCCATCTCTCTTCCATACACAGCCTTCCATCTTCTC
GCGTGAGCCACCATCTCCACATCGTCTTTTCAAACCCTTTGACAGATTTT
TTCTCGGTCCCCCAAACATGTCTGCGGCTCTGGCTATCTAACCCTTTGAC
TCTTGAGAGGAACAACAAAAATTCCGACGTGCGAACATGTTTTTATGTCA
GAGGGCAGTAACGGAGGGAGACATTTGGGGAACAGGGCGCGAAGTCCGTA
GTTTTTGTGTGCAGGTAGTACAATTGACAGAACAAAGTGAAGTGCTCTGG
TTTCAGTCGCGGCAAAGAGTTGCGTATGGCTTTTGCGTGTCACAATATGT
CGAAACACAGGCCCTTAGGGGTCAAAGGGTTTGCAGGCAGATTTCGTTTT
TTCGGTGATCCAGGCCAGTTTCGAACTCACGGCCTTGTATTCCCGTTGCC
AAGGCGAGGCGTCTGCCGGCGATGCCACTACTGTGAAAAGAGGTCTTTAT
CCTCTGTGGACACTTGTGCAAATCATCCCTTGCTTTAGGGTATATATTCC
ACAGGTACTGGTAGTAAGACTTTTTACGGACGTGACCGTGACCCGGAAAT
TAGCAGGCCTCTCGGGAAGTCGAAGTGAACTCGTGGGTGTCATAGCGTAC
GGTTCCGGTTGCGTCTCCTATTATCGTTAACACGCTAACACCTGCACCTT
GTATTCTGCCACGATCGAAATACGTCCAATACGTTTGACAGTGTGCATCA
AGCAAGGTTGGACGGTGGAAGCGGGGGTGTCGAAGATGGTGAAACCTTCC
CCGTCCAAACCAGCAGAGCATGTCGCCTCAACGACTACACCGGATTACCT
GCAGAAGATGGCCCGGCACATTGCTTTCCTCGAGCGACAGAGTTTGGGAT
GAAACAGGCGGCGGGGGAGAGCGAGGGATAGGGAGAGGGGAGGTTCGCTG
CCAGTTTGTTCTGTGTGAAATTTACTCAACGTAGGGTGGTGGATCGGTGA
CGGTAGCGCAAAGAATCATGCGATGCCGTGCGACCGTAGGAGAACCGGAA
GGTGTTTCATGTATTGTACGGTTGAGTGTTCTTTGCGCTATAATGTGCTG
TCCTCGAGTTGTCCTCCCGTCAGGCGTAGCAGGCGTATATGATAATGGTA
TCGCCGTTTCATATTGCGAGCTGTTCTTTTGGTAGCCGTTTGTGCCGCGG
ACCCGCAATGGAAAGCACTCTGTTGTTGTCACCTGGACACCCTGTTGATT
GTGTTGGGAGAACCTCGTGCTCGTGGAATTGGTGAACTATATTAATGCCC
CACTCGAGTCGTTGAACCCGCGCAACTCCCCAAATATGTAGTGTGCCTGC
TTTAATAGTGTTCGTCCAGGGTGCACCGTGTGTTTGTAATCTCCCATGAG
TACTACTTCGTCGTGCAGACCGGTGGGGTGATGAATTGTCGGGAGCGTTC
GTTTTTTACTTTAATTGATTCGCATGTAGCACCAAAAAAAGAAAAAGCCG
TTAGGTTGCCAAGAGAATTATCCCCAGCACGTACGGTGCTGACTTCTTCC
CGTTGAAAAAAGACGTCGACTCGACGATAGCAGCAATTCTCGTGTTTTTT
TCAAGTTGTGATGGCCCTTCCTTTTAACTTTCGACAGGGGCTTATTTTCT
TATTGTGGTTTGCTTGCTAGTTGATCTGCACACAAGTCGACTCTCAGTTT
CGGGGTGTGCTTGGTGGCGGACACGCTCGTGTGGTGACCGCCATTTGTCT
CTTCTTCCCTCTGTGGGCGCGTGGGCGCAAACATTGTTACAGTACAAAGT
GTGACCTCGTCTGTCTTATCGCGGGGGGGAGTGGGGAAGCGAGCGCAAGG
ACCGTTGGGGCGGTTTTGGGGTGTGTGTGTCGTTGTTTTCGCCGTTATTT
TGTTTTCCACCAGTTCGTAGAAGAGAGACCTAATTCGTGTTTGTGCTCGC
TCTCTTTGTATGTATGTTGGCTCGCGTGTGTGTTGTGTGCTGTGTAGTTC
GTTCACTCGTGTATGATCGGATTGTAGACTACGAGTAGGTTAGTCGGCCC
ACGAATCTAACGCCTCAAAAAAAAAACCGGTTCTCGTCTTCTTTTTTTTT
CATCTTTTTCTTTCCGTTCTGTTATTTGTTCCTGTACTACATGTTTTTTC
GGTCTGTGTGTAAAACTTGGGGGGCAAGGCTACTACACGTATCGCTAATC
TTACTTGAATACTGCGGCTACTACATACTATGTATTAGCTGGGCGTCATA
TACTTGTTCATTTCCTATAGACAACACACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2171:11486..16565-

>mRNA_H-paniculata_contig2171.5738.1 ID=mRNA_H-paniculata_contig2171.5738.1|Name=mRNA_H-paniculata_contig2171.5738.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig2171:11486..16565- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCTCCAGCTCCTGTACAAGAGTCCGATGTGGACATTACAAGGAG
GAGAATTGAGGAGCTTATTGCCACCAAGGAATGGCGAGGTGCTGTGTTGC
ACTGTGAAGAGCTTGAGTTGTTGATGGCGGCTCCAGCTCCTGTACAAGAG
TCCGATGTGGACATTACAAGGAGGAGAATTGAGGAGCTTATTGCCACCAA
GGAATGGCGAGGTGCTGTGTTGCACTGTGAAGAGCTTGAGTTGTTGGCAG
GGTCAAAGGGTACGCCCTTCAGACAAGAGGATGCACACCACGCCAAGGTG
CACATGGTGCTGCTGCTAGTGCTGGGCGATGTGCAGGGTCAAAGGGTACG
CCCTTCAGACAAGAGGATGCACACCACGCCAAGGTGCACATGGTGCTGCT
GCTAGTGCTGGGCGATGTGAACAACGCTCGGCACCTGTGGAGAAGGCTTC
CAGATTCCGCTAAAGCGACAGGTGGCGAACTCGCGGCTCTGTGGGACGTA
GGGAAGTTCATATGGAAACGGAACAACGCTCGGCACCTGTGGAGAAGGCT
TCCAGATTCCGCTAAAGCGACAGGTGGCGAACTCGCGGCTCTGTGGGACG
TAGGGAAGTTCATATGGAAACGAGAGATGACGAACGCGCAAGACACTTTG
CGAGGAAAAGAATGGGGCGCGCTCATAATGCCGCTGGTTTCCCTGCTTCG
AGAGCGCCTATTTGAGCGGCAGCTGGAGCTGATTTCCCAGGCCTACACCT
GCCTGCCGTTGGAGCGCGCCGCGGCTATGCTGGGTTGCAGTGTCGACGAT
GCGGAAAAAGAGAGATGACGAACGCGCAAGACACTTTGCGAGGAAAAGAA
TGGGGCGCGCTCATAATGCCGCTGGTTTCCCTGCTTCGAGAGCGCCTATT
TGAGCGGCAGCTGGAGCTGATTTCCCAGGCCTACACCTGCCTGCCGTTGG
AGCGCGCCGCGGCTATGCTGGGTTGCAGTGTCGACGATGCGGAAAAAGTG
TGCATCAAGCAAGGTTGGACGGTGGAAGCGGGGGTGTCGAAGATGGTGAA
ACCTTCCCCGTCCAAACCAGCAGAGCATGTCGCCTCAACGACTACACCGG
ATTACCTGCAGAAGATGGCCCGGCACATTGCTTTCCTCGAGCGACAGAGT
TTGGGATGATGTGCATCAAGCAAGGTTGGACGGTGGAAGCGGGGGTGTCG
AAGATGGTGAAACCTTCCCCGTCCAAACCAGCAGAGCATGTCGCCTCAAC
GACTACACCGGATTACCTGCAGAAGATGGCCCGGCACATTGCTTTCCTCG
AGCGACAGAGTTTGGGATGA
back to top