mRNA_H-paniculata_contig2169.5733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2169.5733.1
Unique NamemRNA_H-paniculata_contig2169.5733.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 5.200e-55
Identity = 88/126 (69.84%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +++V+R      VVE+ FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  127 NVDLLRMFGAKSMRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 252
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.380e-54
Identity = 91/126 (72.22%), Postives = 102/126 (80.95%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLRK+GA +I+VKR       VEH FEVP+EPGSSFP   R GG SR EV  ATRE+ RL+YPE+LEE+V TFM++KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  458 NVDLLRKFGAKSIRVKRKEGEQGFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 583
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.630e-53
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+V+R      VVE+ FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  424 NVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 549
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 7.570e-53
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+V+R      VVE+ FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  434 NVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 559
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.040e-52
Identity = 88/126 (69.84%), Postives = 100/126 (79.37%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+V+R      VVE+  EVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  323 NVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 448
[Close]
BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.460e-52
Identity = 88/126 (69.84%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+VKR      V  + FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  154 NVDLLRMFGAKSIRVKRKEGEQGV--YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 277
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BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 2.720e-52
Identity = 87/126 (69.05%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+V+R      VVE+  EVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS  F+LKRKM EVWVQIR
Sbjct:  307 NVDLLRMFGAKSIRVRRKEGEQGVVEYNLEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIR 432
[Close]
BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.880e-52
Identity = 87/126 (69.05%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+V+R      V  + FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KGW LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRKM EVWVQIR
Sbjct:  207 NVDLLRMFGAKSIRVRRKEGEQGV--YNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIR 330
[Close]
BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.150e-51
Identity = 88/126 (69.84%), Postives = 99/126 (78.57%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQIR 378
            N  LLR +GA +I+VKR      VVE  FEVPTEPGSSFP   R GG SR EV  ATRE+  L++PE+LEE+V TFMR+KG  LIWTPPYMPSFQPIELFWQHGKQYVS NF+LKRK+ EVWVQIR
Sbjct:  319 NVDLLRMFGAKSIRVKRKEGEQGVVEENFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVNFELKRKVREVWVQIR 444
[Close]
BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Match: A0A6H5JIC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC9_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.460e-47
Identity = 85/125 (68.00%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSREEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELFWQHGKQYVSFNFQLKRKMHEVWVQI 375
            N  LLR  GA +I+VK       VV H FEVPTEPGSSFP   R GG SR EV  ATRE  RL++PE+LE++V TFM+ KGW LIWTPPYMPS QPIELFWQHGKQYVS  F+LKRKM EVWVQI
Sbjct:  360 NVDLLRTVGAKSIRVKEGEQG--VVAHNFEVPTEPGSSFPAGNREGGVSRAEVATATRENIRLNHPERLEKRVLTFMKNKGWALIWTPPYMPSLQPIELFWQHGKQYVSVTFELKRKMREVWVQI 482
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2169.5733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF39_9PHAE5.200e-5569.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNM6_ECTSI1.380e-5472.22DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE6.630e-5370.63DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE7.570e-5370.63DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE1.040e-5269.84DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE2.460e-5269.84DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KDX7_9PHAE2.720e-5269.05DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KUM1_9PHAE2.880e-5269.05DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KKL0_9PHAE1.150e-5169.84DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JIC9_9PHAE2.460e-4768.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2169contigH-paniculata_contig2169:12534..12911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.2555606-CDS-H-paniculata_contig2169:12533..129111622929590.2555606-CDS-H-paniculata_contig2169:12533..12911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2169 12534..12911 -
1691480926.103985-CDS-H-paniculata_contig2169:12533..129111691480926.103985-CDS-H-paniculata_contig2169:12533..12911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2169 12534..12911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2169.5733.1prot_H-paniculata_contig2169.5733.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2169 12534..12911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2169.5733.1

>prot_H-paniculata_contig2169.5733.1 ID=prot_H-paniculata_contig2169.5733.1|Name=mRNA_H-paniculata_contig2169.5733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
NAGLLRKYGAGAIKVKRAAANGTVVEHRFEVPTEPGSSFPDARRAGGDSR
EEVPLATREFFRLHYPEKLEEQVETFMRQKGWELIWTPPYMPSFQPIELF
WQHGKQYVSFNFQLKRKMHEVWVQIR
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mRNA from alignment at H-paniculata_contig2169:12534..12911-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2169.5733.1 ID=mRNA_H-paniculata_contig2169.5733.1|Name=mRNA_H-paniculata_contig2169.5733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig2169:12534..12911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCCGGACTGTTGCGTAAGTATGGAGCGGGGGCAATCAAGGTGAAGCG
TGCCGCTGCCAACGGCACAGTTGTGGAGCACCGCTTCGAGGTACCAACAG
AACCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGGGGGGTGATAGCAGA
GAGGAGGTACCGTTGGCCACTCGAGAGTTTTTCCGCCTTCACTACCCTGA
AAAGCTTGAGGAGCAGGTGGAGACGTTCATGCGGCAGAAGGGGTGGGAGT
TGATTTGGACACCACCTTACATGCCGTCTTTTCAGCCGATAGAGTTGTTT
TGGCAGCATGGTAAGCAGTACGTGAGCTTCAACTTTCAGCTGAAGCGAAA
AATGCACGAGGTGTGGGTGCAGATTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2169:12534..12911-

>mRNA_H-paniculata_contig2169.5733.1 ID=mRNA_H-paniculata_contig2169.5733.1|Name=mRNA_H-paniculata_contig2169.5733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2169:12534..12911- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCCGGACTGTTGCGTAAGTATGGAGCGGGGGCAATCAAGGTGAAGCG
TGCCGCTGCCAACGGCACAGTTGTGGAGCACCGCTTCGAGGTACCAACAG
AACCTGGTTCTTCGTTCCCCGATGCGAGGCGGGCGGGGGGTGATAGCAGA
GAGGAGGTACCGTTGGCCACTCGAGAGTTTTTCCGCCTTCACTACCCTGA
AAAGCTTGAGGAGCAGGTGGAGACGTTCATGCGGCAGAAGGGGTGGGAGT
TGATTTGGACACCACCTTACATGCCGTCTTTTCAGCCGATAGAGTTGTTT
TGGCAGCATGGTAAGCAGTACGTGAGCTTCAACTTTCAGCTGAAGCGAAA
AATGCACGAGGTGTGGGTGCAGATTCGCAATGCCGGACTGTTGCGTAAGT
ATGGAGCGGGGGCAATCAAGGTGAAGCGTGCCGCTGCCAACGGCACAGTT
GTGGAGCACCGCTTCGAGGTACCAACAGAACCTGGTTCTTCGTTCCCCGA
TGCGAGGCGGGCGGGGGGTGATAGCAGAGAGGAGGTACCGTTGGCCACTC
GAGAGTTTTTCCGCCTTCACTACCCTGAAAAGCTTGAGGAGCAGGTGGAG
ACGTTCATGCGGCAGAAGGGGTGGGAGTTGATTTGGACACCACCTTACAT
GCCGTCTTTTCAGCCGATAGAGTTGTTTTGGCAGCATGGTAAGCAGTACG
TGAGCTTCAACTTTCAGCTGAAGCGAAAAATGCACGAGGTGTGGGTGCAG
ATTCGC
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