mRNA_H-paniculata_contig21685.5731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21685.5731.1
Unique NamemRNA_H-paniculata_contig21685.5731.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A6H5KTC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC5_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.080e-41
Identity = 68/114 (59.65%), Postives = 89/114 (78.07%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYLVTTK 342
            E+ VRVCS CY + E FR+A LSGS E AM A+  GC+NLRVPY++YH ELPVHCAA+GGN+ +L+WL++DRCCP++ D +K I L D++  SVM AAAASG  ++MRYL  T+
Sbjct:  430 EKKVRVCSTCYVAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREKKIALGDSRRLSVMGAAAASGHVQIMRYLAFTQ 543          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: D7FYF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF4_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 3.790e-35
Identity = 68/114 (59.65%), Postives = 80/114 (70.18%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYLVTTK 342
            ER VRVC  CY   + FR ALL GS + AM A+  GC+NLR P+S    ELPVHCAAAGGNV L+ WLLEDRCCP++ D +K +P  D   RSVM AAA SGR E+MRYL  T+
Sbjct:  570 ERRVRVCRTCYSVGKAFRRALLRGSYQGAMEAHGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLLEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYLTFTQ 681          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A6H5KUU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU5_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.830e-35
Identity = 67/110 (60.91%), Postives = 78/110 (70.91%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYL 330
            ER VRVC  CY   + FR ALL GS + AM AY  GC+NLR P+S    ELPVHCAAAGGNV L+ WL+EDRCCP++ D +K +P  D   RSVM AAA SGR E+MRYL
Sbjct:  640 ERRVRVCRTCYSVGKSFRRALLRGSYQGAMEAYGTGCVNLRAPFS--DRELPVHCAAAGGNVSLMMWLVEDRCCPIFMDDEKTMPHLDGAGRSVMAAAADSGRVEMMRYL 747          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A6H5KTY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY3_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.180e-34
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 1
Query:   10 VRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYLV 333
            +RVC  C  + E FR ALL G +E AM AY  GC+NL  PY+V+HGELPVHCAAAGGNV LLSWL+E+  CP++ D  K +P++D +  +V+ AAA +G+ + MRYLV
Sbjct:  560 MRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCPIFTDSDKKVPIKDLRSLTVLGAAAVNGQVQAMRYLV 667          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A836CC14_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC14_9STRA)

HSP 1 Score: 126 bits (317), Expect = 7.490e-34
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYLV 333
            ER  R+C  C E+NE FR ALL+G    A  AY  GC+NLR PYS+Y   LPVHCAA GG++ LL+WLLE++ CP++ D  + I L + +  SVM  AA +G T +MRYL+
Sbjct:   85 ERKCRICDTCAETNEAFRAALLAGDDAAARAAYRRGCVNLRCPYSIYLNGLPVHCAAEGGSMALLAWLLEEKHCPLFKDLSRTIALGNGRKESVMAVAAQNGHTHIMRYLL 195          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: D8LDM9_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDM9_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.860e-33
Identity = 51/82 (62.20%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKK 246
            E+ VRVCS CY + E FR+A LSGS E AM A+  GC+NLRVPY++YH ELPVHCAA+GGN+ +L+WL++DRCCP++ D +K
Sbjct:  106 EKKVRVCSSCYGAGEDFRKACLSGSEEGAMAAFSTGCVNLRVPYTIYHNELPVHCAASGGNLNILAWLVDDRCCPLFLDREK 187          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: D7FYF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF5_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 5.750e-29
Identity = 54/98 (55.10%), Postives = 70/98 (71.43%), Query Frame = 1
Query:   10 VRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAAS 303
            +RVC  C  + E FR ALL G +E AM AY  GC+NL  PY+V+HGELPVHCAAAGGNV LLSWL+E+  C ++ D  K +P+RD +  +V+ AAA +
Sbjct:  558 MRVCKTCNAAMEAFRTALLLGRAEDAMSAYSTGCVNLDRPYTVFHGELPVHCAAAGGNVGLLSWLVEELGCSIFTDSDKKVPIRDLRSLTVLGAAAVN 655          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A7S3YF48_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YF48_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 1.560e-19
Identity = 49/111 (44.14%), Postives = 65/111 (58.56%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGELPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPL-RDNQHRSVMEAAAASGRTEVMRYL 330
            E+  RVC  C  + E FR AL  G +     AY  G +NLR PY+V+ GE PVHCAAAGG++ LL+WL+++R   V     K  PL   +   S M  AA +G  E+MR+L
Sbjct:  129 EKKARVCRGCQWAMEDFRAALRRGDAPGVRAAYATGVVNLRTPYTVHGGEYPVHCAAAGGSLPLLAWLVDERGAFVRDPQSKQRPLFASDGITSCMSLAAVNGNLEMMRWL 239          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A7S1Z8W0_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8W0_TRICV)

HSP 1 Score: 84.3 bits (207), Expect = 4.200e-18
Identity = 45/126 (35.71%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGEL--PVHCAAAGGNVRLLSWLLEDRCCPVYADPKK----------MIPLRDNQHRSVMEAAAASGRTEVMRYLVTTK 342
            E  V+VC PC      FREAL+ G  ++A   +  G +NLR P+    GE+  PVHCAA GGN+  L WL++    P+     K          ++PL  ++ RS ++ A +    +V+RYLV  K
Sbjct:    5 EGTVKVCGPCDWLATAFREALMGGGHDRAFALHATGNVNLRSPFCNVKGEVLYPVHCAAIGGNISTLRWLVDQHHTPISIQSGKKNNNNNANAPLVPLLTSKGRSALDIAVSGRNVDVLRYLVVEK 130          
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Match: A0A7S4S024_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S024_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.150e-18
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1
Query:    1 ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGEL--PVHCAAAGGNVRLLSWLLEDRCCPVY------------------ADPKKMIPLRDNQHRSVMEAAAASGRTEVMRYLVTTK 342
            E+ V VC  C       R AL+ G  ++ +  YE G +NLRVPY    GE   PVHCAA GGN+ +L WL++ RCCP+Y                  +D     P+  ++ RSV++ A    + +++RYL+  K
Sbjct:  551 EKTVNVCKHCDFLAGSMRIALMGGDFDRVLALYETGNVNLRVPYMNVKGETLYPVHCAAMGGNLEVLKWLVDLRCCPIYTYEYRQNNLYNKKYNKKSSDNTGPTPILTSRGRSVLDIALKGPKVDLLRYLIAEK 684          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21685.5731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KTC5_9PHAE2.080e-4159.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF4_ECTSI3.790e-3559.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUU5_9PHAE3.830e-3560.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTY3_9PHAE3.180e-3455.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC14_9STRA7.490e-3451.35FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
D8LDM9_ECTSI1.860e-3362.20FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FYF5_ECTSI5.750e-2955.10FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3YF48_HETAK1.560e-1944.14Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1Z8W0_TRICV4.200e-1835.71Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4S024_9STRA5.150e-1835.07Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21685contigH-paniculata_contig21685:2338..3487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue6.6e-30
Seed eggNOG ortholog2880.D7FYF4
KEGG koko:K15688
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0023052,GO:0030587,GO:0032502,GO:0035556,GO:0044424,GO:0044444,GO:0044464,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051703,GO:0051704,GO:0051716,GO:0065007,GO:0090702,GO:0099120
EggNOG free text desc.negative regulation of chemokine (C-C motif) ligand 5 production
EggNOG OGsKOG1571@1,KOG1571@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons3
Model size342
Cds size342
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21685.5731.1prot_H-paniculata_contig21685.5731.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21685 2338..3487 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.0737655-CDS-H-paniculata_contig21685:2337..24301622929590.0737655-CDS-H-paniculata_contig21685:2337..2430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 2338..2430 -
1691480926.0399349-CDS-H-paniculata_contig21685:2337..24301691480926.0399349-CDS-H-paniculata_contig21685:2337..2430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 2338..2430 -
1622929590.08637-CDS-H-paniculata_contig21685:2839..29381622929590.08637-CDS-H-paniculata_contig21685:2839..2938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 2840..2938 -
1691480926.0489676-CDS-H-paniculata_contig21685:2839..29381691480926.0489676-CDS-H-paniculata_contig21685:2839..2938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 2840..2938 -
1622929590.1002152-CDS-H-paniculata_contig21685:3337..34871622929590.1002152-CDS-H-paniculata_contig21685:3337..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 3338..3487 -
1691480926.0590856-CDS-H-paniculata_contig21685:3337..34871691480926.0590856-CDS-H-paniculata_contig21685:3337..3487Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21685 3338..3487 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21685.5731.1

>prot_H-paniculata_contig21685.5731.1 ID=prot_H-paniculata_contig21685.5731.1|Name=mRNA_H-paniculata_contig21685.5731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=114bp
ERVVRVCSPCYESNERFREALLSGSSEQAMGAYEMGCINLRVPYSVYHGE
LPVHCAAAGGNVRLLSWLLEDRCCPVYADPKKMIPLRDNQHRSVMEAAAA
SGRTEVMRYLVTTK
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mRNA from alignment at H-paniculata_contig21685:2338..3487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21685.5731.1 ID=mRNA_H-paniculata_contig21685.5731.1|Name=mRNA_H-paniculata_contig21685.5731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1150bp|location=Sequence derived from alignment at H-paniculata_contig21685:2338..3487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGGGTTGTGCGAGTCTGTTCCCCGTGCTATGAGTCGAACGAACGATT CCGGGAGGCGTTATTGTCCGGGTCTTCAGAACAAGCCATGGGTGCGTACG AGATGGGCTGCATTAATCTGCGGGTGCCGTACAGCGTGTACCACGGCGAG GTACGCGGTGTCTTGCGCGTTGTGGTTGGTATTGGTGTTTTTGGTGGTGG TCGCGGCGCTTGCTGATGCTAATTATTCACAACGAAGAGCGGTCGGTAAC CATTTTCCTCGTCAAAGATCAATCAGGTGTAGTAATTATAGCGCCAATTC CCGTCGAATTCCCTCATCTAATCTCCACCTCGAAAGTATGTGATCATTCG TGCCTATGGTCTATGACATTATTACAGGGATACGGAGCCGGCGCTGTTTC AGACAGCCAGGCCAGTCCTGATGGTAGATGCTGCACAGACACGTAAAAGG CATGGCTCTGCTCACAACTTGTTGTCTTCCATGTATCGTTTTCGTTGCAA CTGCTTTCACTCACCCTGGCGTTTCACTTCTCCTGTTGTATGCATTCAGT TGCCGGTGCACTGTGCTGCAGCCGGAGGAAACGTACGGTTGTTGAGCTGG CTGCTGGAGGATCGATGCTGTCCTGTGTACGCCGACCCGAAGAAAATGGT AAGCTTATATGTATATATTTTTGGCATACTCTCTTGAATTCATGGGGCCT AATTTGATAGGGCTGCGTACTGGCACGTTCTTTCTCGCGGTTTTACTGGT ACTGGTCATAATATTGATTCTTGTATTTATTCGTGTCTTGTATTCGTATT TGTCTGGGGCGTGAACTTTTCCCCCCTCCCTACCTCCGGCCAAAAGGTCA ACGGGGTTTTCCTTTGTACAGAACAGTTTTTTAATTGATTTTTTTCAATT TTTTTAACCGTACCAACATATATGTACAAGTCTCGTGGCGACGAACTCTA ACCGCAAACGGTGAGTCCTGACTGTGATGTCAAGTGATTGCTTGCTTTTT CAAAGGCAAGCCTTCCTCACTGTACTAATCGTTGTCCACATATATCTGTC TGAATAGATACCCCTGCGCGATAACCAACACCGGAGCGTGATGGAGGCAG CCGCGGCGAGTGGGCGGACCGAAGTAATGCGCTACCTCGTAACGACAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21685:2338..3487-

>mRNA_H-paniculata_contig21685.5731.1 ID=mRNA_H-paniculata_contig21685.5731.1|Name=mRNA_H-paniculata_contig21685.5731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at H-paniculata_contig21685:2338..3487- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAGGGTTGTGCGAGTCTGTTCCCCGTGCTATGAGTCGAACGAACGATT
CCGGGAGGCGTTATTGTCCGGGTCTTCAGAACAAGCCATGGGTGCGTACG
AGATGGGCTGCATTAATCTGCGGGTGCCGTACAGCGTGTACCACGGCGAG
GAGAGGGTTGTGCGAGTCTGTTCCCCGTGCTATGAGTCGAACGAACGATT
CCGGGAGGCGTTATTGTCCGGGTCTTCAGAACAAGCCATGGGTGCGTACG
AGATGGGCTGCATTAATCTGCGGGTGCCGTACAGCGTGTACCACGGCGAG
TTGCCGGTGCACTGTGCTGCAGCCGGAGGAAACGTACGGTTGTTGAGCTG
GCTGCTGGAGGATCGATGCTGTCCTGTGTACGCCGACCCGAAGAAAATGT
TGCCGGTGCACTGTGCTGCAGCCGGAGGAAACGTACGGTTGTTGAGCTGG
CTGCTGGAGGATCGATGCTGTCCTGTGTACGCCGACCCGAAGAAAATGAT
ACCCCTGCGCGATAACCAACACCGGAGCGTGATGGAGGCAGCCGCGGCGA
GTGGGCGGACCGAAGTAATGCGCTACCTCGTAACGACAAAGATACCCCTG
CGCGATAACCAACACCGGAGCGTGATGGAGGCAGCCGCGGCGAGTGGGCG
GACCGAAGTAATGCGCTACCTCGTAACGACAAAG
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