mRNA_H-paniculata_contig21684.5730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21684.5730.1
Unique NamemRNA_H-paniculata_contig21684.5730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: D8LEZ1_ECTSI (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ1_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 1.920e-92
Identity = 153/225 (68.00%), Postives = 169/225 (75.11%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGS--GGSNDAEVETKSSPKREKSPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEGMGERVEVSGFTS 672
            +RVSLFDASFPGTLPVLN+SAVDQ +K ALALG  VH+RSVFERKHYFYSDLPHGYQITQ   PIA+GGSLPL+++PA     +  G           GGSND              P+IGITRIQLEVDSGKSLHDR G    +SLVDLNRAGTALMEIV EPEIR A E GAA++SLQL LRR+G CDGNMEDGSMRCDLNVS+RP G EG+GERVEV    S
Sbjct:   51 SRVSLFDASFPGTLPVLNASAVDQAVKAALALGSTVHRRSVFERKHYFYSDLPHGYQITQQRHPIATGGSLPLIFDPAGPTKPKAGGAAKARSADELQGGSNDPGFHV---------PAIGITRIQLEVDSGKSLHDRKGEGAERSLVDLNRAGTALMEIVFEPEIRSAAEAGAALRSLQLFLRRVGACDGNMEDGSMRCDLNVSVRPAGTEGLGERVEVKNMNS 266          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A5D6XUM0_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM0_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.660e-57
Identity = 119/248 (47.98%), Postives = 146/248 (58.87%), Query Frame = 1
Query:    7 RVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGSGGSNDAEVE-TKSSPKREKSP-------------------------SIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEGMGERVEVSGFTS 672
             VS FDA+ PGTLP +N   V Q ++  LA+G +VH RSVFERKHYFY DLP GYQ+TQ   PIASGG L                +PA  +GG G S DA  + +K   ++EK+                          S+ I RIQ+E DSGKS+HD   G    ++VDLNRAGTAL+EIV+EP++R   E G  V+ LQ LLR LG CDGNME+GSMRCDLNVS+R   +   GERVEV    S
Sbjct:  503 NVSFFDAALPGTLPTVNRECVHQAVRAGLAVGARVHPRSVFERKHYFYCDLPLGYQLTQQRAPIASGGVLHF-------------DVPA--EGGDGESADAAFDASKFKSRKEKNEALRERKVRQQSRAERMGSGDDIVARSVRIARIQIEQDSGKSIHDLEPG---STVVDLNRAGTALLEIVMEPDLRSPAEAGQVVRQLQHLLRHLGVCDGNMEEGSMRCDLNVSVRRASDPTFGERVEVKNMNS 732          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A6G0X9N4_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9N4_9STRA)

HSP 1 Score: 195 bits (495), Expect = 6.000e-56
Identity = 114/228 (50.00%), Postives = 140/228 (61.40%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGSGGSNDAEVETKSSPKREK--SPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEG---MGERVEVSGFTS 672
            +RVS FDA+ PGTLP +N + V Q I+TA AL   VH +SVFERKHYFY DLP GYQITQ   PIAS G L    + A   A +     +  +      N A    ++S   E+     + I RIQ+E DSGKSLH         + VDLNRAGT LMEIV EP++R A E G  ++ +Q LLR +GTCDGNMEDGSMRCDLNVS+RP  ++     G+RVEV    S
Sbjct:   42 SRVSFFDAALPGTLPTVNRACVAQAIRTAHALQSDVHLQSVFERKHYFYCDLPLGYQITQQRAPIASNGILKFHVKQAQANALKNTNFTSRKE-----KNAALQAAQASSAAEEWIEKQVRINRIQIEQDSGKSLHTLDA-----THVDLNRAGTGLMEIVFEPDLRSAAEAGQVLREVQHLLRHIGTCDGNMEDGSMRCDLNVSVRPKTDDDSAPFGKRVEVKNMNS 259          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A3R6Z786_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Z786_9STRA)

HSP 1 Score: 192 bits (489), Expect = 6.230e-56
Identity = 116/227 (51.10%), Postives = 140/227 (61.67%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGSGGSNDAEVETKSSPKREK--SPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTG--EEGMGERVEVSGFTS 672
            +RVS FDA+ PGTLP LN S V Q ++TA AL   V+ +SVFERKHYFY DLP GYQITQ   PIAS G L    +     A ET  +   T   S    +A  +  ++   ++     + I RIQ+E DSGKSLH         + VDLNRAGT LMEIV EP++R A E G  ++ +Q LLR +GTCDGNMEDGSMRCDLNVS+RP    E   GERVEV    S
Sbjct:   41 SRVSFFDAAMPGTLPSLNRSCVAQAVRTAHALQSDVNLQSVFERKHYFYCDLPLGYQITQQRAPIASNGILKFHVKD---TAGET--VARNTNFSSRKEKNAAQKQLAAADADEWVEKQVRINRIQIEQDSGKSLHTLDA-----THVDLNRAGTGLMEIVFEPDLRSAAEAGQVLREVQHLLRHIGTCDGNMEDGSMRCDLNVSVRPKAAEEHPFGERVEVKNMNS 257          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A024UAY1_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UAY1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 8.250e-56
Identity = 116/227 (51.10%), Postives = 140/227 (61.67%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPAL--VAAAETKGIPATTKGGSGGSNDAEVETKSSPKREKSPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTG--EEGMGERVEVSGFTS 672
            +RVS FDA+ PGTLP +N + V Q ++TA AL   V+ +SVFERKHYFY DLP GYQITQ   PIAS G L    + +   VAA  T       K  +     A  E +   +R+    + I RIQ+E DSGKSLH         + VDLNRAGT LMEIV EP++R A E G  ++ +Q LLR +GTCDGNMEDGSMRCDLNVS+RP    E   GERVEV    S
Sbjct:   41 SRVSFFDAAMPGTLPSVNKACVAQAVRTAHALQSDVNLQSVFERKHYFYCDLPLGYQITQQRAPIASNGVLKFHVKHSSNDVAARNTNFSSRKEKNAAQKQLAAATEVEEGIERQ----VRINRIQIEQDSGKSLHTLDA-----THVDLNRAGTGLMEIVFEPDLRSAAEAGQVLREVQHLLRHIGTCDGNMEDGSMRCDLNVSVRPKSDVEAPFGERVEVKNMNS 258          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: K3X059_GLOUD (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X059_GLOUD)

HSP 1 Score: 193 bits (491), Expect = 2.280e-55
Identity = 107/225 (47.56%), Postives = 137/225 (60.89%), Query Frame = 1
Query:    7 RVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGSGGSNDAEV---ETKSSPKREKSPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEGMGERVEVSGFTS 672
            +VS FDA+ PGTLPV+N   V Q I+T+LA+  +VH RS+FERKHYFY DLP GYQ+TQ   PIA+ G L                IPA +  G  G  ++      +K   ++EK+ ++   +   E    KS+HD        ++VDLNRAGTALMEIV+EP++R   E G  +K LQ LLR L  CDGNME+GSMRCDLNVS+R   +E  GERVEV    S
Sbjct:   34 QVSFFDAALPGTLPVVNKECVHQAIRTSLAVNAQVHPRSIFERKHYFYCDLPLGYQLTQQRAPIATNGVLHF-------------DIPAASIVGESGDEESSAVFDASKYKSRKEKNEALRKWKAAQEAKKRKSIHDLE---EDSTVVDLNRAGTALMEIVMEPDLRSPVEAGQVMKQLQHLLRHLEVCDGNMEEGSMRCDLNVSVRRQDDEAFGERVEVKNMNS 242          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A3F2RH49_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RH49_9STRA)

HSP 1 Score: 194 bits (492), Expect = 4.500e-55
Identity = 118/253 (46.64%), Postives = 151/253 (59.68%), Query Frame = 1
Query:    7 RVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSL-------PLLYEPALVAAAETKGIPATTKGGSGGSNDA--EVETKSSPKREKSP----SIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPT--GEEG----------------MGERVEVSGFTS 672
             VS FDA+ PGTLPV+N   V+Q I+T LA+   V+ RS+FERKHYFY DLP GYQ+TQ   P+ASGG+L        ++ E A     E     A+        N+A  + + K + K+E+      S+ ITRIQ+E DSGKS+HD        ++VDLNRAGTAL+EIV+EP++R   E G  ++ LQ LLR L  CDGNME+GSMRCDLNVS+RPT  GE+                  GERVEV    S
Sbjct:   58 HVSFFDAALPGTLPVINREIVNQAIRTGLAVDATVNPRSMFERKHYFYCDLPLGYQLTQQRAPVASGGALHFELPSSAIISEHAAARGGEETIFDASKYKSRKEKNEALRKWKAKQTAKQEEEDVIARSVRITRIQIEQDSGKSIHDLEDD---STVVDLNRAGTALLEIVMEPDLRSPLEAGQVMRQLQQLLRHLEVCDGNMEEGSMRCDLNVSVRPTNLGEDTDAEALHHALTSANAPPFGERVEVKNMNS 307          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: H3GQR9_PHYRM (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GQR9_PHYRM)

HSP 1 Score: 192 bits (489), Expect = 5.660e-55
Identity = 113/229 (49.34%), Postives = 141/229 (61.57%), Query Frame = 1
Query:    7 RVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPL-LYEPALVAAAETKGIPATTKGGSGGSNDAEVETKSSPKREKSP-----------SIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEGMGERVEV 657
             VSLFDA+ PGTLPVLN   V Q I+T LA+   VH RS+FERKHYFY D+P GYQ+TQ   P+ASGG+L   L   A+V+     GI             +  E   + ++ K+            S+ ITRIQ+E DSGKS HD        ++VDLNRAGTAL+EIV+EP++R   E G  ++ LQ LLR L  CDGNME+GSMRCDLNVS+RPT   G G  VE+
Sbjct:   60 HVSLFDAALPGTLPVLNRECVRQAIRTGLAVDATVHPRSLFERKHYFYCDMPLGYQLTQQRAPVASGGALHFELPASAIVSEHGEGGIEEQETTFDASKYKSRKEKNEALRKRKAKQATKQEDVIPRSVRITRIQIEQDSGKSNHDLE---EHNTVVDLNRAGTALLEIVMEPDLRSPLEAGQVMRQLQHLLRHLDVCDGNMEEGSMRCDLNVSVRPT-NLGRGADVEM 284          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: W4FIX4_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIX4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 6.170e-55
Identity = 115/227 (50.66%), Postives = 139/227 (61.23%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPL-LYEPALVAAAETKGIPATTKGGSGGSNDAEVETKSSPKRE-KSPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTG--EEGMGERVEVSGFTS 672
            +RVS FDA+ PGTLP LN S V Q ++TA AL   V+ +SVFERKHYFY DLP GYQITQ   PIAS G L   + + A    A      +  +      N A+ +  ++   E     + I RIQ+E DSGKSLH         + VDLNRAGT LMEIV EP++R A E G  ++ +Q LLR +GTCDGNMEDGSMRCDLNVS+RP    E   GERVEV    S
Sbjct:   41 SRVSFFDAAMPGTLPSLNRSCVAQAVRTAHALQSDVNLQSVFERKHYFYCDLPLGYQITQQRAPIASNGILKFHVKDTAGDTVARNTNFSSRKE-----KNAAQKQLAAADANEWVEKQVRINRIQIEQDSGKSLHTLDA-----THVDLNRAGTGLMEIVFEPDLRSAAEAGQVLREVQHLLRHIGTCDGNMEDGSMRCDLNVSVRPKAAEEHPFGERVEVKNMNS 257          
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Match: A0A485LE09_9STRA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LE09_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.250e-54
Identity = 114/230 (49.57%), Postives = 141/230 (61.30%), Query Frame = 1
Query:    4 ARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFYSDLPHGYQITQNHRPIASGGSLPLLYEPALV-AAAETKGIPATTKGGSGGSNDAEVETKSSPKREKS---PSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLNRAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCDLNVSIRPTGEEG---MGERVEVSGFTS 672
            +RVS FDA+ PGTLP +N + V Q ++TA AL   V  +SVFERKHYFY DLP GYQITQ   PIAS G L    +   V A A+ +     T+       +A ++  SS    +      + I RIQ+E DSGKSLH         + VDLNRAGT LMEIV EP++R A E G  ++ +Q LLR +GTCDGNMEDGSMRCDLNVS+RP  ++     GERVEV    S
Sbjct:   70 SRVSFFDAALPGTLPAVNRACVAQAVRTAHALQSDVQLQSVFERKHYFYCDLPLGYQITQQRAPIASNGVLKFHVKKVDVNAGADVRNTNFATRK----EKNAALKAASSAAATEEWIEKQVRINRIQIEQDSGKSLHTLDA-----THVDLNRAGTGLMEIVFEPDLRSAAEAGQVLREVQHLLRHIGTCDGNMEDGSMRCDLNVSVRPKTDDDSAPFGERVEVKNMNS 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21684.5730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ1_ECTSI1.920e-9268.00Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A5D6XUM0_9STRA3.660e-5747.98Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A6G0X9N4_9STRA6.000e-5650.00Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A3R6Z786_9STRA6.230e-5651.10Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A024UAY1_9STRA8.250e-5651.10Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
K3X059_GLOUD2.280e-5547.56Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A3F2RH49_9STRA4.500e-5546.64Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
H3GQR9_PHYRM5.660e-5549.34Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
W4FIX4_9STRA6.170e-5550.66Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]
A0A485LE09_9STRA2.250e-5449.57Glutamyl-tRNA(Gln) amidotransferase subunit B, mit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21684contigH-paniculata_contig21684:167..1462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue2.4e-76
Seed eggNOG ortholog2880.D8LEZ1
Preferred namePET112
KEGG rclassRC00010
KEGG koko:K02434
KEGG ReactionR03905,R04212
KEGG Pathwayko00970,ko01100,map00970,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016879,GO:0016884,GO:0019538,GO:0019752,GO:0030956,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050567,GO:0070681,GO:0071704,GO:0090304,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln)
EggNOG OGsCOG0064@1,KOG2438@2759
EC6.3.5.6,6.3.5.7
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons2
Model size672
Cds size672
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929589.9557424-CDS-H-paniculata_contig21684:166..5281622929589.9557424-CDS-H-paniculata_contig21684:166..528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21684 167..528 -
1691480926.0221517-CDS-H-paniculata_contig21684:166..5281691480926.0221517-CDS-H-paniculata_contig21684:166..528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21684 167..528 -
1622929590.0372171-CDS-H-paniculata_contig21684:1152..14621622929590.0372171-CDS-H-paniculata_contig21684:1152..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21684 1153..1462 -
1691480926.0317788-CDS-H-paniculata_contig21684:1152..14621691480926.0317788-CDS-H-paniculata_contig21684:1152..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21684 1153..1462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21684.5730.1prot_H-paniculata_contig21684.5730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21684 167..1462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21684.5730.1

>prot_H-paniculata_contig21684.5730.1 ID=prot_H-paniculata_contig21684.5730.1|Name=mRNA_H-paniculata_contig21684.5730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
SARVSLFDASFPGTLPVLNSSAVDQVIKTALALGCKVHQRSVFERKHYFY
SDLPHGYQITQNHRPIASGGSLPLLYEPALVAAAETKGIPATTKGGSGGS
NDAEVETKSSPKREKSPSIGITRIQLEVDSGKSLHDRSGGLRPQSLVDLN
RAGTALMEIVLEPEIRGAEEVGAAVKSLQLLLRRLGTCDGNMEDGSMRCD
LNVSIRPTGEEGMGERVEVSGFTS
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mRNA from alignment at H-paniculata_contig21684:167..1462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21684.5730.1 ID=mRNA_H-paniculata_contig21684.5730.1|Name=mRNA_H-paniculata_contig21684.5730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig21684:167..1462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCCAGGGTAAGCTTGTTTGATGCCTCCTTCCCAGGGACCCTACCGGT GCTCAACTCCTCCGCTGTGGACCAGGTTATCAAGACAGCGCTCGCTCTTG GCTGCAAGGTTCATCAGCGTAGCGTGTTCGAGCGCAAGCACTATTTCTAC AGTGACCTGCCTCACGGTTACCAGATCACGCAGAACCACCGACCTATTGC CAGCGGCGGGTCGTTGCCTTTGCTCTACGAACCGGCCCTAGTGGCGGCAG CAGAAACCAAAGGAATCCCGGCGACTACGAAAGGTGGGTCTGGTGGAAGT AATGATGCCGGTGTTGCCGCGGGTTCCTGGGCGCCGAGCTAGGTAGACTC GACCGGTGTTGGAGGTGCTCGCGATTCGCCGAAAGACAGTGTGTCTCGAG TCGCTGGAGCTATTTCCAACGATGATCGAGATGCTGTAGTGCATCTGCTA GTTTTGCCGGTGCACTTACTTGTATACGGTTAAGCGACGTTCTGCGCATG TTCCACATCTCGGATTTTGGAATATGACTTATGACTGTGACAGTCCCCAA GATACTTAGCTCATTTGAATCCCCTTGTGTTCGTGGTATTGTCATAATTT ATTCCAGTGTTAGGAGTATCATAGTCCATTTTTTAGTACCAGCATATGCA TTTCCACATTTTTTTTGTACTCCTTGGGCGTGATGATGGTGGTGATGATG ATGATGATGATGGTGATGGTGATGATGATGATGATGATGATGATGATGAT GATGATGATGATGATGGTGATGATGATGATGAGGATGACGATGATGATGA TGATGATGATGATGATGATGACGATGAAGGCGTTTTTACTGAGAAAAAAA AAGAAAAAGATTCATCCGAGGTGTGATTCTTTCCCCTACTGCTGTTTCTG CCGTTGGCCTCTTTCTCTCCATCTTTTCTCAAAGAAGTCGAAACAAAGTC ATCCCCCAAAAGAGAAAAGTCTCCGTCCATTGGCATCACCCGTATCCAGC TCGAAGTAGACTCGGGCAAAAGCCTGCATGATAGATCAGGTGGACTTCGG CCGCAAAGCCTCGTCGACTTGAATCGCGCCGGCACTGCCCTCATGGAAAT AGTCTTAGAGCCCGAAATCCGAGGCGCAGAGGAGGTCGGGGCCGCCGTGA AGTCGCTGCAGCTGTTGCTGCGCCGTTTAGGGACGTGCGACGGCAATATG GAGGATGGCTCCATGCGCTGCGATCTCAATGTCTCGATTCGGCCTACGGG AGAAGAAGGGATGGGCGAAAGAGTAGAGGTGAGCGGTTTCACCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig21684:167..1462-

>mRNA_H-paniculata_contig21684.5730.1 ID=mRNA_H-paniculata_contig21684.5730.1|Name=mRNA_H-paniculata_contig21684.5730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig21684:167..1462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGCCAGGGTAAGCTTGTTTGATGCCTCCTTCCCAGGGACCCTACCGGT
GCTCAACTCCTCCGCTGTGGACCAGGTTATCAAGACAGCGCTCGCTCTTG
GCTGCAAGGTTCATCAGCGTAGCGTGTTCGAGCGCAAGCACTATTTCTAC
AGTGACCTGCCTCACGGTTACCAGATCACGCAGAACCACCGACCTATTGC
CAGCGGCGGGTCGTTGCCTTTGCTCTACGAACCGGCCCTAGTGGCGGCAG
CAGAAACCAAAGGAATCCCGGCGACTACGAAAGGTGGGTCTGGTGGAAGT
AATGATGCCGTCGGCCAGGGTAAGCTTGTTTGATGCCTCCTTCCCAGGGA
CCCTACCGGTGCTCAACTCCTCCGCTGTGGACCAGGTTATCAAGACAGCG
CTCGCTCTTGGCTGCAAGGTTCATCAGCGTAGCGTGTTCGAGCGCAAGCA
CTATTTCTACAGTGACCTGCCTCACGGTTACCAGATCACGCAGAACCACC
GACCTATTGCCAGCGGCGGGTCGTTGCCTTTGCTCTACGAACCGGCCCTA
GTGGCGGCAGCAGAAACCAAAGGAATCCCGGCGACTACGAAAGGTGGGTC
TGGTGGAAGTAATGATGCCGAAGTCGAAACAAAGTCATCCCCCAAAAGAG
AAAAGTCTCCGTCCATTGGCATCACCCGTATCCAGCTCGAAGTAGACTCG
GGCAAAAGCCTGCATGATAGATCAGGTGGACTTCGGCCGCAAAGCCTCGT
CGACTTGAATCGCGCCGGCACTGCCCTCATGGAAATAGTCTTAGAGCCCG
AAATCCGAGGCGCAGAGGAGGTCGGGGCCGCCGTGAAGTCGCTGCAGCTG
TTGCTGCGCCGTTTAGGGACGTGCGACGGCAATATGGAGGATGGCTCCAT
GCGCTGCGATCTCAATGTCTCGATTCGGCCTACGGGAGAAGAAGGGATGG
GCGAAAGAGTAGAGGTGAGCGGTTTCACCTCTAAGTCGAAACAAAGTCAT
CCCCCAAAAGAGAAAAGTCTCCGTCCATTGGCATCACCCGTATCCAGCTC
GAAGTAGACTCGGGCAAAAGCCTGCATGATAGATCAGGTGGACTTCGGCC
GCAAAGCCTCGTCGACTTGAATCGCGCCGGCACTGCCCTCATGGAAATAG
TCTTAGAGCCCGAAATCCGAGGCGCAGAGGAGGTCGGGGCCGCCGTGAAG
TCGCTGCAGCTGTTGCTGCGCCGTTTAGGGACGTGCGACGGCAATATGGA
GGATGGCTCCATGCGCTGCGATCTCAATGTCTCGATTCGGCCTACGGGAG
AAGAAGGGATGGGCGAAAGAGTAGAGGTGAGCGGTTTCACCTCT
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