mRNA_H-paniculata_contig21675.5727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21675.5727.1
Unique NamemRNA_H-paniculata_contig21675.5727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21675.5727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21675contigH-paniculata_contig21675:893..1502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size610
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21675.5727.1prot_H-paniculata_contig21675.5727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21675 978..1409 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.720565-UTR-H-paniculata_contig21675:892..9771622929588.720565-UTR-H-paniculata_contig21675:892..977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21675 893..977 +
1691480925.7810752-UTR-H-paniculata_contig21675:892..9771691480925.7810752-UTR-H-paniculata_contig21675:892..977Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21675 893..977 +
1622929588.755876-UTR-H-paniculata_contig21675:1409..15021622929588.755876-UTR-H-paniculata_contig21675:1409..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21675 1410..1502 +
1691480925.8122466-UTR-H-paniculata_contig21675:1409..15021691480925.8122466-UTR-H-paniculata_contig21675:1409..1502Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21675 1410..1502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.74052-CDS-H-paniculata_contig21675:977..14091622929588.74052-CDS-H-paniculata_contig21675:977..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21675 978..1409 +
1691480925.799086-CDS-H-paniculata_contig21675:977..14091691480925.799086-CDS-H-paniculata_contig21675:977..1409Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21675 978..1409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21675.5727.1

>prot_H-paniculata_contig21675.5727.1 ID=prot_H-paniculata_contig21675.5727.1|Name=mRNA_H-paniculata_contig21675.5727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MKAEEVTKATKTAMAALAAPATLEAEDQEDIPAALLVGPGMSLVTGRGME
QGKYRIRKTPKGYRNEGEARINVDAAGRTARRADAEGWRRAEDRDDIGSG
KGDGGDSTRGGNVVSTERPRLQRRRQTQEQRRRRRRRIRRRRI*
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mRNA from alignment at H-paniculata_contig21675:893..1502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21675.5727.1 ID=mRNA_H-paniculata_contig21675.5727.1|Name=mRNA_H-paniculata_contig21675.5727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=610bp|location=Sequence derived from alignment at H-paniculata_contig21675:893..1502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGATGATAATATAAATCTCAAATTTCTCGTTTCCACCAATTTGCCGACGA
GAGTCGTGGAAACAGCAGCGGATCAGGCGGCCGCGATGAAAGCGGAGGAA
GTAACGAAAGCGACGAAGACGGCAATGGCAGCGCTGGCGGCGCCGGCGAC
CTTGGAGGCGGAGGATCAGGAAGACATACCAGCCGCGCTGCTGGTGGGAC
CGGGCATGTCGCTGGTGACTGGGAGAGGGATGGAACAAGGAAAGTACAGA
ATACGGAAGACACCGAAAGGCTACAGGAACGAAGGAGAGGCTAGAATCAA
TGTGGACGCCGCGGGGCGGACCGCCCGCCGCGCAGACGCGGAAGGATGGA
GACGAGCGGAGGACAGAGATGACATCGGGAGTGGGAAAGGCGACGGCGGT
GACAGCACAAGAGGCGGAAATGTCGTCAGCACGGAAAGACCGCGGCTGCA
GAGACGAAGGCAGACGCAGGAGCAGAGACGGAGACGGCGCAGGAGGATTC
GGCGGCGGCGGATTTGAGAGCGGAGGAGCAAGAGGAGGCAGTGGCGCCGT
CGCGGGTGAAGCCGGGTGACGCTGTCAACGGGGGACGAGGCGGAGCACGA
GGAAGGCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21675:893..1502+

>mRNA_H-paniculata_contig21675.5727.1 ID=mRNA_H-paniculata_contig21675.5727.1|Name=mRNA_H-paniculata_contig21675.5727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig21675:893..1502+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGCGGAGGAAGTAACGAAAGCGACGAAGACGGCAATGGCAGCGCT
GGCGGCGCCGGCGACCTTGGAGGCGGAGGATCAGGAAGACATACCAGCCG
CGCTGCTGGTGGGACCGGGCATGTCGCTGGTGACTGGGAGAGGGATGGAA
CAAGGAAAGTACAGAATACGGAAGACACCGAAAGGCTACAGGAACGAAGG
AGAGGCTAGAATCAATGTGGACGCCGCGGGGCGGACCGCCCGCCGCGCAG
ACGCGGAAGGATGGAGACGAGCGGAGGACAGAGATGACATCGGGAGTGGG
AAAGGCGACGGCGGTGACAGCACAAGAGGCGGAAATGTCGTCAGCACGGA
AAGACCGCGGCTGCAGAGACGAAGGCAGACGCAGGAGCAGAGACGGAGAC
GGCGCAGGAGGATTCGGCGGCGGCGGATTTGAATGAAAGCGGAGGAAGTA
ACGAAAGCGACGAAGACGGCAATGGCAGCGCTGGCGGCGCCGGCGACCTT
GGAGGCGGAGGATCAGGAAGACATACCAGCCGCGCTGCTGGTGGGACCGG
GCATGTCGCTGGTGACTGGGAGAGGGATGGAACAAGGAAAGTACAGAATA
CGGAAGACACCGAAAGGCTACAGGAACGAAGGAGAGGCTAGAATCAATGT
GGACGCCGCGGGGCGGACCGCCCGCCGCGCAGACGCGGAAGGATGGAGAC
GAGCGGAGGACAGAGATGACATCGGGAGTGGGAAAGGCGACGGCGGTGAC
AGCACAAGAGGCGGAAATGTCGTCAGCACGGAAAGACCGCGGCTGCAGAG
ACGAAGGCAGACGCAGGAGCAGAGACGGAGACGGCGCAGGAGGATTCGGC
GGCGGCGGATTTGA
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