mRNA_H-paniculata_contig2167.5722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2167.5722.1
Unique NamemRNA_H-paniculata_contig2167.5722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2167.5722.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 7.910e-19
Identity = 68/192 (35.42%), Postives = 93/192 (48.44%), Query Frame = 3 
Query:  138 YSGFTRNKLKHAAPHRWSDLAHVLGLVILNSEAIKTTFTREGKECPLADGMTTSGNYTPSSNQ*PKSSSTSPTMGATETAWASAAVESSPQIL-----------RAHTDLTEAARETRELLRHTIDWRRWNKRYGPLNAWDTDHQFDMQMMMHPPTASLTHVDIFCDDKERAAEIKETTTDRVIKLAVDLAE 680
            Y+     KL +AAP RWS + +VL  VI+N  AI   +  EGK  PL                      TS T    E  +    ++ + Q++           R H+ LT  AR TR+ +  ++DWR ++KRY    + DTD+ FDMQM +HP TA L +VD        A  +K T TD+VI LAV LAE
Sbjct:  144 YAQCYHRKLVNAAPQRWSGVTNVLEAVIVNRPAIDGVYAAEGKHSPL----------------------TSLTDEIDELHYI---IKPAAQVIVSGERPATSTPREHSLLTGVARGTRQHMCESVDWRWFDKRYKSAKSQDTDYVFDMQMALHPTTADLRYVDKLASTSAFAGAVKSTITDKVISLAVKLAE 310
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BLAST of mRNA_H-paniculata_contig2167.5722.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-10
Identity = 69/243 (28.40%), Postives = 101/243 (41.56%), Query Frame = 3 
Query:  138 YSGFTRNKLKHAAPHRWSDLAHVLGLVILNSEAIKTTFTREGKECPLADG------------------MTTSGNYTPSS---------------NQ*PKSSSTSPTMGATETAWASAAVESSPQILRAHTDLTEAARETRELLRHTIDWRRWNKRYGPLNAWDT-DHQFDMQMMMHPPTASLTHVDIFCDDKERAAEIKETTTDRVIKLAVDLAEKGEET-----EEPASNGKRRAPSGTGGN 749
            YS     KL + AP RWS ++ VL   I+N   I   + REG   PLA                    +T    + P+                N   +    +P                +  + R H  LT+  R+ RE L   +D R +++ Y   ++  T D  FDMQM +HP TA L +VD     +  AA +K++ TD++I LAV+LAEK  E      E+  S  KR  P+   G+
Sbjct:  236 YSQCLHRKLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVNPLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSADSEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIALAVELAEKEMERKQAGPEQDESVAKRARPAAAPGS 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2167.5722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNY1_9PHAE7.910e-1935.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.000e-1028.40Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2167contigH-paniculata_contig2167:633..2921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size809
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2167.5722.1prot_H-paniculata_contig2167.5722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2167 2469..2921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.9592493-UTR-H-paniculata_contig2167:632..7601622929587.9592493-UTR-H-paniculata_contig2167:632..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 633..760 +
1691480925.4224904-UTR-H-paniculata_contig2167:632..7601691480925.4224904-UTR-H-paniculata_contig2167:632..760Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 633..760 +
1622929587.9784708-UTR-H-paniculata_contig2167:2240..24681622929587.9784708-UTR-H-paniculata_contig2167:2240..2468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 2241..2468 +
1691480925.437998-UTR-H-paniculata_contig2167:2240..24681691480925.437998-UTR-H-paniculata_contig2167:2240..2468Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2167 2241..2468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.0286272-CDS-H-paniculata_contig2167:2468..29211622929588.0286272-CDS-H-paniculata_contig2167:2468..2921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2167 2469..2921 +
1691480925.4515648-CDS-H-paniculata_contig2167:2468..29211691480925.4515648-CDS-H-paniculata_contig2167:2468..2921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2167 2469..2921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2167.5722.1

>prot_H-paniculata_contig2167.5722.1 ID=prot_H-paniculata_contig2167.5722.1|Name=mRNA_H-paniculata_contig2167.5722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MGATETAWASAAVESSPQILRAHTDLTEAARETRELLRHTIDWRRWNKRY
GPLNAWDTDHQFDMQMMMHPPTASLTHVDIFCDDKERAAEIKETTTDRVI
KLAVDLAEKGEETEEPASNGKRRAPSGTGGNSGTGGREGLGAEGGRRWKL
*
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mRNA from alignment at H-paniculata_contig2167:633..2921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2167.5722.1 ID=mRNA_H-paniculata_contig2167.5722.1|Name=mRNA_H-paniculata_contig2167.5722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2289bp|location=Sequence derived from alignment at H-paniculata_contig2167:633..2921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAATCGGTCGACATGGTGGCCTGGAGTCGCTGGTGGGGCAGGAGGTTGA
GGCGGTTCGCCGGGCAGCCGGCGTCGAAGAAGACGTGTTTGGTGCATCTG
CCACATGCTGGACTGGGTCCTCGTCGAGGTACGTCCGTCTGTTTTGTTTG
CATTACCCGTGATGAAATCAATATCTCGTGAATTGATACCGGTCCAGTTT
AAGAAGAGTTCAACGTCAACAGTATGATGAATTTGCAACAAGGCAGTAAT
GGCTGGTGCAGCTACAGATTGCGGTTCTTTCAACGACAATGTTGTTGTGA
ATGCACGTCAAAGTCTTCTTCGCTGTGCAACTGTGCAGAAAATCCCGGTA
ATAAGGAATATTGCACTCCCCGAGCAACCGGTGTTGGGTGGATTGCGCAA
ACGTTTACACGCTTACCCAAGATGAAATCGATATTCCATTGACTGATACA
GATACATGTTACCCTTTGTTCAACGGCAACGGTGTTTGTGAATTTGCAAG
AATATAGTAATGGTTGATGCAATTAGAGTTTACGGATTTGTCAATATCAA
TTTCGAGTGAATTGCGTAAAACTTTGCCTCACCGTGTAGTATTACCGATA
ATCCTGGTAATTTTGCAACCCCTTGGGCAACTGGTTTTTGGTGAATTAGT
GCAAGCGCAATATTTGCTAGTAACTCGGACTATTGGGTAATCGTGGCCAT
GTTCAATATTGGCACTGATTATTCTTCGTCATATTAGTGCCTCAGGCTTG
AAGGTCGAGAATATTCCCGTGGACATGTGGGTAAGATTGGTATTTTTTTG
TCACTGTATTTATTCATTGCGTACGCGCGAGTTCTTGAAAATGCGAAACT
GTTACTGTTTATTTGTCACGGTACGCTGTAATCGTGTAATTGTGTAATCG
TGTAATCGTGCATGCGTTGAACCCCAGAAATCGAGAAATGTGAACATAAC
AAAATCGCATCCATACAGACAGTAAACTTAAATCTTTACTTTTGTTGTGG
GATAAACCGCTAAATACGCCCTGCAAGAATTACCGTAGGAGTTGCATAGA
TTGCGTGTTGTCTGACCCCCGTTGACCATCCCAACGTCGAACCTAAATGA
TGTCTGAGCGAAACTAAATAGCTAATAGTGCAATGCTGAACGATGTTCCT
CCACGTGGTCGTTCCCCGGGTGGTATGATCGTGTATGGGTTCCTGGGTAC
ACAGCACTTGGGACTCACATATGCCATTCACAGTGATCTATGTGCATATA
GTTCTTGACTTTGTATGACCTTGTTCGTTTACGGTGTAATCAAAAGTTAT
AAACTATATAAATATGGACGAGTGATATTAGCTTAACTAGCGCGTGACTC
AATCATCATGCCAGGTTACCCCATGCCCGTCTCTATTCGGCAATGGCCGG
TAATTCCGACTGAGCGCGACGTTATTACACGGCGTTCAAATGTGATAACG
CAGAAATATATTGTTCTCGTAGGGCCCTATGAGAACATCTTTTTCATGTG
CTCGAAAGGCCAACCGTTATCACTGATTATGTATAGACAATAAATATCAA
TCTATCCTGCCCCATCTTGTCGGCTACACTGTTATTGGGGAATTTCCTAA
CGGAGCAGGCTGAGCTGTACTCGGGTTTCACGAGGAACAAGCTAAAACAT
GCGGCGCCTCACCGGTGGAGCGACCTTGCTCACGTACTCGGGCTTGTCAT
CTTGAACAGCGAGGCCATCAAAACGACATTTACCCGCGAAGGAAAGGAGT
GCCCGCTAGCGGATGGGATGACGACATCCGGGAATTATACTCCCTCGTCA
AACCAGTAGCCGAAATCCTCGTCAACGTCCCCCACCATGGGGGCTACCGA
GACCGCCTGGGCGTCAGCAGCGGTCGAATCATCCCCGCAAATCCTGAGAG
CCCACACAGACTTGACGGAAGCGGCTCGGGAAACGCGCGAGCTCCTCCGT
CATACCATCGACTGGCGACGGTGGAACAAGCGATATGGGCCACTGAATGC
ATGGGACACGGACCATCAGTTTGACATGCAGATGATGATGCACCCTCCTA
CGGCCTCGCTTACCCACGTCGACATCTTCTGCGACGACAAAGAGCGAGCA
GCAGAGATCAAGGAAACGACGACCGACCGCGTGATCAAGCTGGCGGTCGA
CCTTGCGGAGAAAGGGGAGGAAACGGAGGAGCCGGCGTCAAACGGGAAAC
GGCGTGCACCATCCGGTACTGGCGGCAACAGTGGAACGGGTGGGAGAGAA
GGTCTGGGAGCGGAGGGGGGGAGGCGGTGGAAGCTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2167:633..2921+

>mRNA_H-paniculata_contig2167.5722.1 ID=mRNA_H-paniculata_contig2167.5722.1|Name=mRNA_H-paniculata_contig2167.5722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig2167:633..2921+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCTACCGAGACCGCCTGGGCGTCAGCAGCGGTCGAATCATCCCC
GCAAATCCTGAGAGCCCACACAGACTTGACGGAAGCGGCTCGGGAAACGC
GCGAGCTCCTCCGTCATACCATCGACTGGCGACGGTGGAACAAGCGATAT
GGGCCACTGAATGCATGGGACACGGACCATCAGTTTGACATGCAGATGAT
GATGCACCCTCCTACGGCCTCGCTTACCCACGTCGACATCTTCTGCGACG
ACAAAGAGCGAGCAGCAGAGATCAAGGAAACGACGACCGACCGCGTGATC
AAGCTGGCGGTCGACCTTGCGGAGAAAGGGGAGGAAACGGAGGAGCCGGC
GTCAAACGGGAAACGGCGTGCACCATCCGGTACTGGCGGCAACAGTGGAA
CGGGTGGGAGAGAAGGTCTGGGAGCGGAGGGGGGGAGGCGGTGGAAGCTC
TGAATGGGGGCTACCGAGACCGCCTGGGCGTCAGCAGCGGTCGAATCATC
CCCGCAAATCCTGAGAGCCCACACAGACTTGACGGAAGCGGCTCGGGAAA
CGCGCGAGCTCCTCCGTCATACCATCGACTGGCGACGGTGGAACAAGCGA
TATGGGCCACTGAATGCATGGGACACGGACCATCAGTTTGACATGCAGAT
GATGATGCACCCTCCTACGGCCTCGCTTACCCACGTCGACATCTTCTGCG
ACGACAAAGAGCGAGCAGCAGAGATCAAGGAAACGACGACCGACCGCGTG
ATCAAGCTGGCGGTCGACCTTGCGGAGAAAGGGGAGGAAACGGAGGAGCC
GGCGTCAAACGGGAAACGGCGTGCACCATCCGGTACTGGCGGCAACAGTG
GAACGGGTGGGAGAGAAGGTCTGGGAGCGGAGGGGGGGAGGCGGTGGAAG
CTCTGA
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