mRNA_H-paniculata_contig21664.5721.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21664.5721.1
Unique NamemRNA_H-paniculata_contig21664.5721.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21664.5721.1 vs. uniprot
Match: A0A6H5L4R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.430e-37
Identity = 58/90 (64.44%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   13 GTPFSLVETPIHTAGMQIATIDGLCFDGRRFRRCNDGDPTLRWGVGIDFRKTEPSRFLFSFFDQEQCAVRDGEEATQGEALGTRRYTWIW 282
            GT   +VETPIH AGMQIAT+D  CFDG RFR CNDGDPTLRWG+G+DFR TEPSR LF FFD+E+CAVR+G+ A +G+        W W
Sbjct:  149 GTALEVVETPIHVAGMQIATVDDYCFDGARFRTCNDGDPTLRWGIGMDFRSTEPSRNLFYFFDREKCAVREGQTARKGDCKNKGAARWGW 238
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BLAST of mRNA_H-paniculata_contig21664.5721.1 vs. uniprot
Match: D8LIW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIW7_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 3.470e-31
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   58 MQIATIDGLCFDGRRFRRCNDGDPTLRWGVGIDFRKTEPSRFLFSFFDQEQCAVRDGEEATQGEALGTRRYTWIW 282
            MQIAT D  CFDG RFR CNDGDPTLRWG+GIDFR TEPSR LF FFD+E+CAVR+GE A +G+        W W
Sbjct:    1 MQIATADDYCFDGARFRTCNDGDPTLRWGIGIDFRSTEPSRNLFYFFDREKCAVREGETARKGDCKNKGAARWGW 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21664.5721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4R6_9PHAE2.430e-3764.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIW7_ECTSI3.470e-3166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21664contigH-paniculata_contig21664:3453..4134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_001840.1
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.8744807-CDS-H-paniculata_contig21664:3452..35891622929587.8744807-CDS-H-paniculata_contig21664:3452..3589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21664 3453..3589 +
1691480925.3931513-CDS-H-paniculata_contig21664:3452..35891691480925.3931513-CDS-H-paniculata_contig21664:3452..3589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21664 3453..3589 +
1622929587.8929913-CDS-H-paniculata_contig21664:3983..41341622929587.8929913-CDS-H-paniculata_contig21664:3983..4134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21664 3984..4134 +
1691480925.4109197-CDS-H-paniculata_contig21664:3983..41341691480925.4109197-CDS-H-paniculata_contig21664:3983..4134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21664 3984..4134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21664.5721.1prot_H-paniculata_contig21664.5721.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21664 3453..4134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21664.5721.1

>prot_H-paniculata_contig21664.5721.1 ID=prot_H-paniculata_contig21664.5721.1|Name=mRNA_H-paniculata_contig21664.5721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
LCKQGTPFSLVETPIHTAGMQIATIDGLCFDGRRFRRCNDGDPTLRWGVG
IDFRKTEPSRFLFSFFDQEQCAVRDGEEATQGEALGTRRYTWIWI*
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mRNA from alignment at H-paniculata_contig21664:3453..4134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21664.5721.1 ID=mRNA_H-paniculata_contig21664.5721.1|Name=mRNA_H-paniculata_contig21664.5721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=682bp|location=Sequence derived from alignment at H-paniculata_contig21664:3453..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCAAGCAGGGTACGCCATTTTCTCTTGTTGAAACCCCAATCCACAC
CGCGGGTATGCAGATCGCGACGATAGACGGCCTTTGCTTCGACGGACGCC
GATTCCGGCGGTGCAATGACGGCGATCCGACCCTGCGGTATGACAAAGTA
TGCATGTATTTTTTTCGTTGTCTTGAATATATGTTTATTTCTGGAATCCC
CCCTCCGCATCTCCTGTTTAGTCAAGCCGTAGAAATCGAATAGCCAGAAA
AGTAGTTTATCAGCACCGGGCAGCGACCGCCTGACCTTCGGGGGCTTTTA
TGCAATGTGTTCCATGCATCGGAGTGTTTCCAGAACCGTGCTGATATTTG
TTTTTTTTTCTCCAGCGAAATGATGGTTGCTTCTGCTTCATTATTGGACC
GCTAGCTAGCCAGCTAGCTAGCTATTGCAAAGATATATAGTTCTGTTGTT
GTCGGCACGTTGTTACCTGTGCGTTATGGATGATGGTTGGAATGTGGCGA
TTTGTTGGAATATGACGATTGGAACAAACAGGTGGGGTGTTGGCATAGAC
TTCCGCAAGACGGAGCCTTCAAGGTTTCTATTTTCGTTCTTTGACCAGGA
GCAGTGCGCGGTGCGCGACGGGGAGGAGGCCACCCAGGGTGAGGCACTTG
GCACTAGACGATACACCTGGATTTGGATTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21664:3453..4134+

>mRNA_H-paniculata_contig21664.5721.1 ID=mRNA_H-paniculata_contig21664.5721.1|Name=mRNA_H-paniculata_contig21664.5721.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig21664:3453..4134+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCAAGCAGGGTACGCCATTTTCTCTTGTTGAAACCCCAATCCACAC
CGCGGGTATGCAGATCGCGACGATAGACGGCCTTTGCTTCGACGGACGCC
GATTCCGGCGGTGCAATGACGGCGATCCGACCCTGCGCTGTGCAAGCAGG
GTACGCCATTTTCTCTTGTTGAAACCCCAATCCACACCGCGGGTATGCAG
ATCGCGACGATAGACGGCCTTTGCTTCGACGGACGCCGATTCCGGCGGTG
CAATGACGGCGATCCGACCCTGCGGTGGGGTGTTGGCATAGACTTCCGCA
AGACGGAGCCTTCAAGGTTTCTATTTTCGTTCTTTGACCAGGAGCAGTGC
GCGGTGCGCGACGGGGAGGAGGCCACCCAGGGTGAGGCACTTGGCACTAG
ACGATACACCTGGATTTGGATTTAAGTGGGGTGTTGGCATAGACTTCCGC
AAGACGGAGCCTTCAAGGTTTCTATTTTCGTTCTTTGACCAGGAGCAGTG
CGCGGTGCGCGACGGGGAGGAGGCCACCCAGGGTGAGGCACTTGGCACTA
GACGATACACCTGGATTTGGATTTAA
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