mRNA_H-paniculata_contig21640.5717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21640.5717.1
Unique NamemRNA_H-paniculata_contig21640.5717.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.360e-29
Identity = 86/272 (31.62%), Postives = 129/272 (47.43%), Query Frame = 3
Query:   15 NTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRW--------KG--TNPRHRL-R*GFCT------HPFRRCCKDGGSHNVA------GGSTIVLF*YHSGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            + E LP   + V+ SKY   W+EA+++EM GH KTG    +     E+  + +  + ++W        KG  T+ + RL   GF        H     C    S  +A      GG     F      Y+       +Y    +  G ++GK +K +RALY LKQ+GR+W     N LVD G E C A+PCV R++VD K+  I  ++VD +  VG E+    L  +      + +L   +WY GC+  RD   GT T+ Q  ++  LM+RF
Sbjct:  731 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKI-----EKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQ-AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRF 996          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.430e-29
Identity = 86/272 (31.62%), Postives = 129/272 (47.43%), Query Frame = 3
Query:   15 NTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRW--------KG--TNPRHRL-R*GFCT------HPFRRCCKDGGSHNVA------GGSTIVLF*YHSGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            + E LP   + V+ SKY   W+EA+++EM GH KTG    +     E+  + +  + ++W        KG  T+ + RL   GF        H     C    S  +A      GG     F      Y+       +Y    +  G ++GK +K +RALY LKQ+GR+W     N LVD G E C A+PCV R++VD K+  I  ++VD +  VG E+    L  +      + +L   +WY GC+  RD   GT T+ Q  ++  LM+RF
Sbjct: 1284 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKI-----EKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQ-AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRF 1549          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 2.510e-29
Identity = 85/276 (30.80%), Postives = 129/276 (46.74%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL--------R*GFCTHP----FRRCCKDGGSHNVAGGSTIVLF*YHSGVYSGRNRSH------SIYET------------CGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++          GF   P    FR       S +    S  ++         G N +H      S + T            CG  S + +K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct:  840 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDKFKARVVARGFSQLPNVDYFR-------SSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1106          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.160e-28
Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++   +       F +       H+ +    S  +          G N +H                   +   CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct:  731 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 997          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.210e-28
Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++   +       F +       H+ +    S  +          G N +H                   +   CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct: 1110 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1376          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.220e-28
Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++   +       F +       H+ +    S  +          G N +H                   +   CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct: 1273 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1539          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.450e-28
Identity = 77/261 (29.50%), Postives = 122/261 (46.74%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRLR*GFC------THPFRRCCKDGGSHN----VAGGSTIVLF*YH-SGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH   G+    +  +  + GK+          T    R+  GF       + P    C    S      VA    + L  +     Y+       ++      CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct:  337 SDVESPPMTVAGVNKSVYREGWEQAMREEFEGHLGHGDVFIRRRWKTNKEGKID---------TLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERF 588          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.240e-28
Identity = 80/269 (29.74%), Postives = 123/269 (45.72%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++   +       F +       H+ +    S  +          G N +H                   +   CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD  + +I  ++VD + + G ++ C  L  + + K    NL    W+ GC+  RD   GTL + QT ++D+++ERF
Sbjct: 1130 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1396          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.600e-28
Identity = 79/269 (29.37%), Postives = 124/269 (46.10%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S Y   WE+A++ E  GH  TG   FV    + R   V S+    WK TN   ++   +       F +       H+ +    S  +          G N +H                   +   CG  S +  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  ++VD + + G ++ C  L  + S K    NL    W+ GC+  RD   GTL + QT ++D++++RF
Sbjct:  285 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRF 551          
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.660e-28
Identity = 79/266 (29.70%), Postives = 120/266 (45.11%), Query Frame = 3
Query:   12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNP-RHRL-R*GFCTHPFRRCCKDGGSHNVAGGSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
            ++ E  P  + GV +S     WE+A++ E  GH  TG   FV               D   +G+ P + RL   GF   P   C +   S +    S  +          G N  H                   +   CG  S K  K +RA+Y LKQ+GRQW     + LV+ G E C A+PCV R+MVD+ + +I  +HVD + + G ++ C  L  +F+ +    NL    W+ GC+  RD   G L + QT ++D++++RF
Sbjct:  320 SDVEAPPITVAGVAKSVCREGWEQAMREEFEGHLGTGTFSFV---------------DGAPEGSRPFKARLVATGFSQIPNVDCFR---SSSPCPSSASIKLMLPVANEKGMNHHHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRF 567          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE1.360e-2931.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.430e-2931.62Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQW4_9PHAE2.510e-2930.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE1.160e-2829.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.210e-2829.74Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.220e-2829.74Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.450e-2829.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JN00_9PHAE2.240e-2829.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JC10_9PHAE2.600e-2829.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE3.660e-2829.70Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21640contigH-paniculata_contig21640:2646..3394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.5
Seed ortholog evalue7.4e-08
Seed eggNOG ortholog5297.GMQ_02354T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons1
Model size751
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.402594-UTR-H-paniculata_contig21640:2645..30371622929587.402594-UTR-H-paniculata_contig21640:2645..3037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21640 2646..3037 +
1691480925.1824846-UTR-H-paniculata_contig21640:2645..30371691480925.1824846-UTR-H-paniculata_contig21640:2645..3037Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21640 2646..3037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929587.4168158-CDS-H-paniculata_contig21640:3037..33941622929587.4168158-CDS-H-paniculata_contig21640:3037..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21640 3038..3394 +
1691480925.1923833-CDS-H-paniculata_contig21640:3037..33941691480925.1923833-CDS-H-paniculata_contig21640:3037..3394Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21640 3038..3394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21640.5717.1prot_H-paniculata_contig21640.5717.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21640 3038..3394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21640.5717.1

>prot_H-paniculata_contig21640.5717.1 ID=prot_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITL
IPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWS
KGTLTMDQTVFVDNLMERF
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mRNA from alignment at H-paniculata_contig21640:2646..3394+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21640.5717.1 ID=mRNA_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=749bp|location=Sequence derived from alignment at H-paniculata_contig21640:2646..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTTTCGTTGGCTAATACGGAACCTTTGCCTCATAATATAGATGGTGTG CGACGATCCAAATATTGTCCGTTTTGGGAGGAGGCGGTTCAAAGAGAAAT GGGAGGCCATGCTAAAACGGGCAATTCAGTTTTCGTACAGAACTAACGCG ATGAGAGATGTGGTAAAGTTCAAAGCCAGATTGATAGCCGATGGAAGGGC ACAAATCCAAGACATAGACTACGATGAGGTTTTTGTACTCACCCCTTCCG CCGCTGCTGTAAAGACGGTGGTAGCCATAACGTTGCAGGAGGATCTACAA TCGTTTTATTTTGATACCATTCAGGAGTTTATTCTGGCAGGAATCGATCA CACTCTATTTATGAGACTTGTGGTTTATTGTCGGGTAAGACTATGAAGCC AGACAGAGCTTTGTACAGTCTAAAACAGGCTGGTAGGCAGTGGAATACAC GTTTGGTGAACGAGTTAGTCGATTTCGGGATAGAAAATTGCATGGCTGAA CCCTGTGTGTCTCGTGAGATGGTTGACGACAAGATTACCCTGATCCCGTC AGTTCATGTGGATGGCATGGCAATGGTGGGTAGGGAGGATGGTTGCAACA GGCTTTTCGATGCGTTCTCAGGAAAAAATTCTATGACCAATCTAAGGGGG TGGTCCTGGTACACCGGTTGTTCATTCAGTCGAGATTGGAGTAAGGGTAC TTTGACGATGGACCAAACTGTTTTTGTCGACAACCTCATGGAGCGATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig21640:2646..3394+

>mRNA_H-paniculata_contig21640.5717.1 ID=mRNA_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21640:2646..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCCAGACAGAGCTTTGTACAGTCTAAAACAGGCTGGTAGGCAGTG
GAATACACGTTTGGTGAACGAGTTAGTCGATTTCGGGATAGAAAATTGCA
TGGCTGAACCCTGTGTGTCTCGTGAGATGGTTGACGACAAGATTACCCTG
ATCCCGTCAGTTCATGTGGATGGCATGGCAATGGTGGGTAGGGAGGATGG
TTGCAACAGGCTTTTCGATGCGTTCTCAGGAAAAAATTCTATGACCAATC
TAAGGGGGTGGTCCTGGTACACCGGTTGTTCATTCAGTCGAGATTGGAGT
AAGGGTACTTTGACGATGGACCAAACTGTTTTTGTCGACAACCTCATGGA
GCGATTCATGAAGCCAGACAGAGCTTTGTACAGTCTAAAACAGGCTGGTA
GGCAGTGGAATACACGTTTGGTGAACGAGTTAGTCGATTTCGGGATAGAA
AATTGCATGGCTGAACCCTGTGTGTCTCGTGAGATGGTTGACGACAAGAT
TACCCTGATCCCGTCAGTTCATGTGGATGGCATGGCAATGGTGGGTAGGG
AGGATGGTTGCAACAGGCTTTTCGATGCGTTCTCAGGAAAAAATTCTATG
ACCAATCTAAGGGGGTGGTCCTGGTACACCGGTTGTTCATTCAGTCGAGA
TTGGAGTAAGGGTACTTTGACGATGGACCAAACTGTTTTTGTCGACAACC
TCATGGAGCGATTC
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