mRNA_H-paniculata_contig21640.5717.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.360e-29 Identity = 86/272 (31.62%), Postives = 129/272 (47.43%), Query Frame = 3
Query: 15 NTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRW--------KG--TNPRHRL-R*GFCT------HPFRRCCKDGGSHNVA------GGSTIVLF*YHSGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
+ E LP + V+ SKY W+EA+++EM GH KTG + E+ + + + ++W KG T+ + RL GF H C S +A GG F Y+ +Y + G ++GK +K +RALY LKQ+GR+W N LVD G E C A+PCV R++VD K+ I ++VD + VG E+ L + + +L +WY GC+ RD GT T+ Q ++ LM+RF
Sbjct: 731 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKI-----EKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQ-AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRF 996
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.430e-29 Identity = 86/272 (31.62%), Postives = 129/272 (47.43%), Query Frame = 3
Query: 15 NTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRW--------KG--TNPRHRL-R*GFCT------HPFRRCCKDGGSHNVA------GGSTIVLF*YHSGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
+ E LP + V+ SKY W+EA+++EM GH KTG + E+ + + + ++W KG T+ + RL GF H C S +A GG F Y+ +Y + G ++GK +K +RALY LKQ+GR+W N LVD G E C A+PCV R++VD K+ I ++VD + VG E+ L + + +L +WY GC+ RD GT T+ Q ++ LM+RF
Sbjct: 1284 DVEALPLTYEDVKWSKYRKQWDEAIKKEMDGHEKTGTFSKI-----EKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQ-AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRF 1549
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 126 bits (316), Expect = 2.510e-29 Identity = 85/276 (30.80%), Postives = 129/276 (46.74%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL--------R*GFCTHP----FRRCCKDGGSHNVAGGSTIVLF*YHSGVYSGRNRSH------SIYET------------CGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ GF P FR S + S ++ G N +H S + T CG S + +K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 840 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDKFKARVVARGFSQLPNVDYFR-------SSSPCPSSASIMLMLAVANEKGMNLNHWDVKQASPHATLDEEVFPRLPAGCGDKSHQIVKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1106
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.160e-28 Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ + F + H+ + S + G N +H + CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 731 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 997
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.210e-28 Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ + F + H+ + S + G N +H + CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 1110 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1376
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.220e-28 Identity = 80/269 (29.74%), Postives = 124/269 (46.10%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ + F + H+ + S + G N +H + CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 1273 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1539
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE) HSP 1 Score: 124 bits (310), Expect = 1.450e-28 Identity = 77/261 (29.50%), Postives = 122/261 (46.74%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRLR*GFC------THPFRRCCKDGGSHN----VAGGSTIVLF*YH-SGVYSGRNRSHSIY----ETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH G+ + + + GK+ T R+ GF + P C S VA + L + Y+ ++ CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 337 SDVESPPMTVAGVNKSVYREGWEQAMREEFEGHLGHGDVFIRRRWKTNKEGKID---------TLKARRVARGFSQITSIISIPSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERF 588
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.240e-28 Identity = 80/269 (29.74%), Postives = 123/269 (45.72%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ + F + H+ + S + G N +H + CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD + +I ++VD + + G ++ C L + + K NL W+ GC+ RD GTL + QT ++D+++ERF
Sbjct: 1130 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERF 1396
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 123 bits (308), Expect = 2.600e-28 Identity = 79/269 (29.37%), Postives = 124/269 (46.10%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNPRHRL---R*GFCTHPFRRCCKDGGSHNVAG--GSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S Y WE+A++ E GH TG FV + R V S+ WK TN ++ + F + H+ + S + G N +H + CG S + K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I ++VD + + G ++ C L + S K NL W+ GC+ RD GTL + QT ++D++++RF
Sbjct: 285 SDVEAPPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRR-PVSSKWCFSWK-TNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRF 551
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE) HSP 1 Score: 122 bits (307), Expect = 3.660e-28 Identity = 79/266 (29.70%), Postives = 120/266 (45.11%), Query Frame = 3
Query: 12 ANTEPLPHNIDGVRRSKYCPFWEEAVQREMGGHAKTGNSVFVQN*RDERCGKVQSQIDSRWKGTNP-RHRL-R*GFCTHPFRRCCKDGGSHNVAGGSTIVLF*YHSGVYSGRNRSH------------------SIYETCGLLSGKTMKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLIPSVHVDGMAMVGREDGCNRLFDAFSGKNSMTNLRGWSWYTGCSFSRDWSKGTLTMDQTVFVDNLMERF 749
++ E P + GV +S WE+A++ E GH TG FV D +G+ P + RL GF P C + S + S + G N H + CG S K K +RA+Y LKQ+GRQW + LV+ G E C A+PCV R+MVD+ + +I +HVD + + G ++ C L +F+ + NL W+ GC+ RD G L + QT ++D++++RF
Sbjct: 320 SDVEAPPITVAGVAKSVCREGWEQAMREEFEGHLGTGTFSFV---------------DGAPEGSRPFKARLVATGFSQIPNVDCFR---SSSPCPSSASIKLMLPVANEKGMNHHHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRF 567 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21640.5717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21640.5717.1 >prot_H-paniculata_contig21640.5717.1 ID=prot_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp MKPDRALYSLKQAGRQWNTRLVNELVDFGIENCMAEPCVSREMVDDKITLback to top mRNA from alignment at H-paniculata_contig21640:2646..3394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21640.5717.1 ID=mRNA_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=749bp|location=Sequence derived from alignment at H-paniculata_contig21640:2646..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21640:2646..3394+ >mRNA_H-paniculata_contig21640.5717.1 ID=mRNA_H-paniculata_contig21640.5717.1|Name=mRNA_H-paniculata_contig21640.5717.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21640:2646..3394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |