mRNA_H-paniculata_contig2158.5692.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2158.5692.1
Unique NamemRNA_H-paniculata_contig2158.5692.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2158.5692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2158contigH-paniculata_contig2158:15233..21478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size377
Cds size297
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2158.5692.1prot_H-paniculata_contig2158.5692.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2158 15233..18608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.795977-CDS-H-paniculata_contig2158:15232..154011622929583.795977-CDS-H-paniculata_contig2158:15232..15401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 15233..15401 -
1691480923.9069066-CDS-H-paniculata_contig2158:15232..154011691480923.9069066-CDS-H-paniculata_contig2158:15232..15401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 15233..15401 -
1622929583.8110192-CDS-H-paniculata_contig2158:18480..186081622929583.8110192-CDS-H-paniculata_contig2158:18480..18608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 18481..18608 -
1691480923.925067-CDS-H-paniculata_contig2158:18480..186081691480923.925067-CDS-H-paniculata_contig2158:18480..18608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2158 18481..18608 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.8222353-UTR-H-paniculata_contig2158:18608..186491622929583.8222353-UTR-H-paniculata_contig2158:18608..18649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2158 18609..18649 -
1691480923.937904-UTR-H-paniculata_contig2158:18608..186491691480923.937904-UTR-H-paniculata_contig2158:18608..18649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2158 18609..18649 -
1622929583.8380728-UTR-H-paniculata_contig2158:21441..214781622929583.8380728-UTR-H-paniculata_contig2158:21441..21478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2158 21442..21478 -
1691480923.94645-UTR-H-paniculata_contig2158:21441..214781691480923.94645-UTR-H-paniculata_contig2158:21441..21478Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2158 21442..21478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2158.5692.1

>prot_H-paniculata_contig2158.5692.1 ID=prot_H-paniculata_contig2158.5692.1|Name=mRNA_H-paniculata_contig2158.5692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MGNERRTSSGGGFAGKHSELLPQPPPVETVEEAMGHVLRMIGRGPHLSVP
FVSIVQGLYLLDHPDNNSSNNSGRNANDRATLPERPPPAPPNRGVTTSS
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mRNA from alignment at H-paniculata_contig2158:15233..21478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2158.5692.1 ID=mRNA_H-paniculata_contig2158.5692.1|Name=mRNA_H-paniculata_contig2158.5692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6246bp|location=Sequence derived from alignment at H-paniculata_contig2158:15233..21478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAGGGCTGTCAGCGACTTGTTATTGGCCACGAGAGGTATGTATGTTTA
CCTCAGCCGTGGGCACACTGTCGGGGATGGTGTCGACGACTGTATTATAG
CCCACACTTCCGAAAGTGTTCGCCGACACCATCGGAGGCATGGTCGACGC
GTGCGAGTTGTTGCCGATATCTTCTAAATATTGTGGTTAGTAGGCAGAAG
CTATGGCAGGGCGGGTTGGTCTAGAGGTAAGGTGTACGCTATGTCCCTAT
GTCCAAATTAGACTAATCTTTTCTCGAGTTTCGGAACTCTGTCCGACCTT
GCAAGGTGTCGGCGACACTTTCAGGCGTGTTGGCGGAAGCCCTTGAAGTA
TCGGTCACAGTGTCAGAAATGTTGGCGAAACGCTAACTCAAGAGTCAGCC
ACACTGTTGGTCGTGTGGTGACTTTGCTGAACACTACCAACATCTTAGGT
CATTCTTCTCTACTGTGCTGTATGTCTAACGTTGTACTGTGCCTCGTGCC
TCACGTGACTTCGTTTTCGGTTTCAGATTTTATGTTGCCAGTCATGATGA
TTGCACACCCTCGACATTTGCCATTAGATTATTTTGCACTCGACACGGCA
ATCACCACCATCAGGCAACAAACAATGTACCTACTACTTCAAAATACTGG
TGTTATACTGTTTGACTTTGCATTTCACTGGGAAGAGTAGGCGATCTCCG
TTGTGTGCCTCTGCCCAGGTACGCATATAATAGGATTTTGGCGCCAAATT
TATACCTTGCACCGTCGCGAAACTTCAAACGGTTTATAGTACAATACGGG
GACAAGTAAACGACGCGATGCTGACCGGATGTCTGCCTCACAGTGCTGTT
TTCGAGAAATAGAGTTGAAACCCCTGTGCCTCGCCAAGCGTGTATTGGAC
ATGTCTGCTAGGCGTTTTGTTTCCGCGATATGATGATGTGCGTGAGAACC
ACAGCCAACTTGTATTGAGAGACCGAGTGAACCCCGGACCATGGGCTGCG
AAGCCCGGCCTGTCACACTAATATGCCCTCGTGGGCTGGTGATAACATTT
CGCTGGTACAACTACTGTCTAGTATATACCGTTTAGCCTTTGTGCCCTAT
CGCTGTCTGTGAAGTACTGTATGGTAGATGCGGCCCCCTGTAGATGACGC
ACGATACCACCCCCTTCCCGGTAGGTGACGGGAGATAACACCCCCCCCCC
CTTAATGATCTCATTCTGTTGAACTTATGATGAGTGTAAACAACTGAAAG
TTCAGCTACTTCAGCTCAATATGGGTTCATCGGAGTTATTATGTGAGCTT
CAGAGCTATCGTTCAACTGACTATGGCAGGGTTGACTTACGAATGAAAAT
TTTCCTGGGTGTCTGTCGTCCATGTGAAAACTATTTCATGTTCCACCTGC
AGTACACATGGGAGTGATACAACTATACTCTCTTGTGAAGGTTGCCGTAG
CCCATGCCTCCCCCCTACCTCCTCCCAATCACCCCTTCAGTGTGTAAGGT
TGCCCACAACAGATACAAAGTGAAGAGGGTCCAGTAATCGCTATAGTCGT
GGGGGCAGCAAATGTTGTTTTGGAAAAAAACGGTAATCCCCCAAAGAGGT
CGACCGCTCCGGTCGTTGTGCATACAACCATGCCACCCCCCCCTTTTCTC
CTTGTCCTGAATGCGTGTACTATCTATACTTGACCCGGTTTCAAGTTGTG
GCCGGCTCGCAGGTTCCGTGAAGATATGTTTCTTATTTTGTGCGAAATTC
ATAGCAGTCTTGTTTCGTTGAGGCCGTGACTCTGAGGCGATTTTTTTGCG
GGACTCTGGAAATCTGGAGATTGTCATACTGTCATCAGGAGTCGTAATTT
TTTTTTTTTACCTCGAAGAACTGGCAACCGTTGTTTTCGTGTTGTCTCTA
AACAGGAACAAGGGTCGACAACTCTTTCGGGTACATTTTGGCTCTTGAAT
TTCCGCTCAAAATCTGGGAAAAAGTAGATTTCCAATTTTCCGCCAAAAAC
ATGCCCGCTAGTGATGACTTTAGAAGCCTAAAAGTCCCCAACCGAACTGG
CAACCGTCATTTTCATGCTTCGCCTAAACAAGATCAAGGGTCAGCAGCTT
TTTTGGAGGTATCATTTTGTCTCTTAAGTATCTGCTCGAAAAACTGAACA
ATTCGAGATATATTTCCAGATTTCTGCCAAAAACGTGCCCGCTAGTAATA
ACCCCTGTTGCCATTTCCTAGCAGCCGGTTCAAAGTTCAAATAACATCAT
TTTCCCTGATTAGCTCTTACCATCGAGTCTTTGAGTTTCAGTCACATTTT
CAGTTCATATGCCCGCGGCAGACATCATTTGTCGTGCGCAACGCGCCTAA
CACACTTGACCCACCACGTACGTTGCCTTGCGGCTATCATAAGAATGCTG
TACTAGCAACTTTCGCAATTCGAAAGCGTTTATTTGCGTGCGTTTTGACG
TTGTCTGTGCTCGCTAAAATTTTCAACTTGCACTCAAAACGTTGGCTACT
AGGAATGGCCCTCACCGCAGTCGGGTCGGGTTTCTTGTGAGCGGCTCGGT
ATCACGCGGGGGGGAAATGTATTGAATGCGTTCTGAACATGTACATTGTG
TTGCTGAATGCAGAATGTATGCACGAAAGTATATTGCTGTGATCTTATTT
ACTACTGCCTCGCTCGATCATTCTCCAAACCCCGAGGATACCCTAAATCT
GTGGGTGCAGCAGCGCCTGATCTCCCCTCCCCTCCCTCCCAGTCTCTCTG
TATGTTTTCGTATCTGCTCAACATTGGGTTTAATTGTTGTTGGAATTTTG
TTGACCTTTAAACTTGTTCGAGGATACAGCGACGGCAGCAGGCGTTCCGA
GATTTTATTGAAGTGCACACATGGGCAATGAACGCAGGACATCCTCGGGC
GGGGGCTTCGCAGGCAAACACTCCGAGCTGTTGCCGCAGCCGCCACCGGT
GGAAACGGTCGAAGAAGCGATGGGGCATGTCCTTCGCATGATAGGACGGT
AAGTTCTGCGGCATTGTTGCGGATACCCAAGCATTGTAGTTGTCATATTC
CAATCGTGCTCCACCAATCGGCACCTCCGGGGTGGACAAGTGTTTTGTAT
CTAGCCTGAATGTTATGTTGTGGGAAGTTCATCATCCTGCAATGTTCTCC
AATTCACGGATATAAATTATCTCTGTTCTTCATGTATCTAGGGGTCGCGG
GGGAAGTGTAAGTATACATCTGATACGAGATAGCAACAGACGTCAATTAC
CAGACAACCACTGCCACAATTAACGCAGGAGCCAGGACTCTACCACCAAC
TACAGTACAATATCGCAATAGCACCACACGCGCCCATTGCCACGGATAGT
TTCACACACAAGACAGCCTCTACACTATGGGAACGGGGATTGAAAAAAAT
AGCGGCGAGAAAAGAAAATAGTAAAAAAGTAAGAATGTGATCAAACCGTA
GATCAACAACATACTGTGAATCACATGACAACAGTAACCATCGAACGAAC
CGGAGGTAATCTCGGGGTTTCCAAGCTACTGGATTACTCATCCATAATCT
GGAGAACAAACCAGAGGCGATGTGGGGAGAACTTGACGAGATCCACAGCA
TTTACAACACAGGGTCTCGGTTTTGAAAGTGGATATTAACCCGACTACCG
AATTTTTTTCGGTCAATCAGATAGCTCCTTTAAACAAGATTGACCAGTCG
GGAAACTGCGGGCATGAAATCTCTTTCTCTCTGTGAGAGCCGCTGGCAGC
AACAGCAGGACAACGCACAATTAGCGTGAGACTTGGTGTAAAGAACAATA
ATAAAATAAACTGAAGTTACGCTTAGTAAGTGTATCACTGGTAAGTGATG
ACTCATCCACAAAGCTACAAAAATAGGGGACGGAGGGTGTACCTTTTTTT
TACACGCCTTAGCTGTTAGATCCTTGACCACCCATCCTCGGGAGGCCGCA
GCTATCGGATAGTAATGCTCCACATACCCTGTGATAAGTAGGGACCCAGA
AGGAGTACAGCTTGTGTGACCGAAGGCTCGGAAAGATCAGACTTTCGTCC
AGCGAAGAAATTCCATGATATCTGTGTCCAGTTACCGAGGGACGCTCTGT
CGTCGCAGCACTTGGTGCAAGCTTTTTATTGTGAACTTCTTCAAGCGTAA
CTATCTCGAGAACGGAGGTCTCTCGCGATCAAAACAGGCCGTAAATGGAC
AGATCTTCGCAAGATCAAGCGACATATCTCCTCAAGATATTTCCAGCGAC
GTACGCCTTCCGTTGCCAGTATCGCAGTCGCTGTCGAGAGAACCACGTTT
GAAAAACGTTCGCACCACGAGTTCGATCACAGAGAGTTGAATAATATTTA
TGTACATCTCCTACACACATCGGATTTCTGTTTTGTGGGATATTTTTCTG
ATGTTTTTTTACTGCAATACATACTCGGGTGTGGCGTTGTATACTGGAAA
TGGCAACAGAGGCGATTGTGTGGCTGCCTCGTTCCCTCTGAAACAAGTAG
TGTTTGACTCGTCCGTATATATATATATATATATATATATATATGTATAT
GTGTGTGTGTGTGTACTGCACGAGCCAGACGTTGATAACTTTTGCGGCGT
GTTTTACGTTTCATTAACATGTATATCTAGAAAGAGGGAGATATATATTC
ATCGGCTGAAATTAACGTGGTTTGACTCATGCAGGCAACAGAGTCTCGGG
ATTTTTGAAAGATGTTGACCCATGTAGGGGTCGACCAGTAAATCAATTCA
ATGCTCTTGTCATATGATCTGCAAATCTGACAAACAACTGAGCGAGTAAA
CGACTCCAAGTCACCAGACAAAAATCTGAGAGAACCGACCGCCGAACGGT
TGCAAGTCATCAAACAGAACGGACCCGGTTCTGGTTCTGGTCGCGGGTAA
AAGTCGAAAATGAAGGGGGGAAATCACGGGCGGGGAGCGGGGGCCGGGGC
GGGGTTACGGCCATGTCTACTCCCATGCGCCCGCGTTTGTTACCTCACCT
ATTGAATAATTATCCGAAGCCCATGAGTCATGCACAATGGCTCGCTGCGC
TCGTAGTCACTCCCGGTTCTCGCATGTCGGCATATTGTCTGTGGAAATTC
TTTACAGCAGTTGATTGAGCTTAATGTTGAAAAACGTTTTAGCGGTACTT
GGGGGGCGCAGAGTTGAAAAACTGTTCCATTTACTGGCATCATCACCAAA
CTCAACCTATTGCGTATTAGGTAAAAACGTGGTGTGAAAGAAGTGCGATG
AATTATCGCGGTATGTCCAGAGTTTAGGTCGGTATAGCGCATATATAGAC
TGGTATAGCGTGGACATCTCGACACAACATGGACGTTCGCTGGTGCAGTG
AAAGTAATACATAGCCTATATACTGGAGCAGAGCAGATTACTTCGGCAGC
TGGCTTGCGAGGAGGGGGCATGCCTTACCTACATGCCTCTGATGTAGAGT
AGTACCTCGACCGTGCTCTAGGCTGACATGCCATCAAGCTTCGAGGAATA
TTATATCTACTTTTATATATATATACACAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGCTCTATACATATAACGACATCATGAGGGCCAGCT
CTGGTGCGCAAATCTCCTTCATATTGTTTTAGCCCCCTGCCCTCCGCCCC
CTTCCCTCCCTCATGTGGTCAGTTTGTGAAATCAATCATCTATCAGTATA
CGGAGTAAAGTTGACAGATTTTACCTCCCCTTTTGATTAAGTGCTATGGG
CGTGTTTTTTATTGTATTCTCTTGTTGCTGTCGATGCTGTCTATCCTTTT
GTTGAAGTTGTTATTGGCAAGGGTCGTTTATACAACTTATTTTCACTTCT
AGGTTGTAGTCGATGTGCAGGAATCCTGCTCCTGCTTGAAGTTTGCTAAT
TATTCTACAGGTTTCGTCTTGAACGCTCGCACACGAATCTAACATTCCTC
CCTACGGGTTCAATTTTACTGATGAGTGTGTACAACTGCAGATTGAAGTT
AGCTACAGAACCTCAACATGCCCCCCCCTCCCCCCTCCCCGTCTATTCTT
ATTGATCGTGGCCTGTCCTCTCAACAGCGGACCGCACCTATCCGTTCCAT
TTGTCAGCATCGTCCAGGGGCTGTACCTCTTGGACCACCCTGACAACAAC
AGCAGCAACAACAGCGGTCGAAACGCGAATGATCGGGCCACTCTCCCAGA
ACGACCACCGCCCGCGCCTCCCAACCGTGGCGTAACAACATCCTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig2158:15233..21478-

>mRNA_H-paniculata_contig2158.5692.1 ID=mRNA_H-paniculata_contig2158.5692.1|Name=mRNA_H-paniculata_contig2158.5692.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig2158:15233..21478- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAATGAACGCAGGACATCCTCGGGCGGGGGCTTCGCAGGCAAACA
CTCCGAGCTGTTGCCGCAGCCGCCACCGGTGGAAACGGTCGAAGAAGCGA
TGGGGCATGTCCTTCGCATGATAGGACGATGGGCAATGAACGCAGGACAT
CCTCGGGCGGGGGCTTCGCAGGCAAACACTCCGAGCTGTTGCCGCAGCCG
CCACCGGTGGAAACGGTCGAAGAAGCGATGGGGCATGTCCTTCGCATGAT
AGGACGCGGACCGCACCTATCCGTTCCATTTGTCAGCATCGTCCAGGGGC
TGTACCTCTTGGACCACCCTGACAACAACAGCAGCAACAACAGCGGTCGA
AACGCGAATGATCGGGCCACTCTCCCAGAACGACCACCGCCCGCGCCTCC
CAACCGTGGCGTAACAACATCCTCGCGGACCGCACCTATCCGTTCCATTT
GTCAGCATCGTCCAGGGGCTGTACCTCTTGGACCACCCTGACAACAACAG
CAGCAACAACAGCGGTCGAAACGCGAATGATCGGGCCACTCTCCCAGAAC
GACCACCGCCCGCGCCTCCCAACCGTGGCGTAACAACATCCTCG
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