mRNA_H-paniculata_contig2156.5688.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2156.5688.1 vs. uniprot
Match: A0A6H5K6U1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6U1_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 8.990e-10 Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query: 1606 MADASVETPSEEIRILQAARESARAAAEASGSGRRARVPSIKALEAAGMAEVEGAQWMSRKRQQNEKWKQRDNKETVRESTELKKRLKVESAAKIAAGRMLSAPEIDGHG 1935
MA+A PS+E+R+LQ AR+SARAAAEASG GRRAR PS K LEA+G E AQWM+R++++ E R S +LK++ K +AA + G ++ A G G
Sbjct: 1 MAEAPGFPPSDEMRLLQEARDSARAAAEASGYGRRARAPSRKFLEASGKIVGESAQWMTREKKE----------EQARLSLQLKEQRKAAAAAGLKPGEVIEAATAAGAG 100
BLAST of mRNA_H-paniculata_contig2156.5688.1 vs. uniprot
Match: D7G084_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G084_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 1.740e-6 Identity = 73/283 (25.80%), Postives = 128/283 (45.23%), Query Frame = 1
Query: 1630 PSEEIRILQAARESARAAAEASGSGRRARVPSIKALEAAGMAEVEGAQWMSRKRQQNEKWKQRDNKETVRESTELKKRLKVESAAKIAAGRMLSAP---------EIDGHGNRKCVVKYG----MYSEFETGTASDQSSLVGIQQTQTGGTEQYQGTDTHVTGVATTMVEGV--ESVKITGD----------ESSASGIFSKRSAPATANKTPPGISSGKRLKTARNRMQGNGIEVQSGEVQQTAKAALMQMGESQNILKTLCQFGDCPKIASYGINGTVRYC 2403
PS+++R+LQ+AR+SA EASGSGRRARVPS K LEA+G E AQWM++++++ E R + + + K +AA + G ++ A E +G G+ ++ G + + T ++ G + + G + +G D + V G E+ + D E+ ASG +T T + G +N+++ + +S + + + Q G + +K +C+ C + A +G++G VRYC
Sbjct: 425 PSDDMRLLQSARQSAHE--EASGSGRRARVPSRKVLEASGKMAGETAQWMTKEKKE----------EQARINKRFRAQRKAAAAAGLKIGEVIEATASPAPRAESEEEGLGSGGTSIRGGGSPVSKASWRKLTPTEILPAAGKKPSAEGAASEVRGNDAAMAETTDEQVVGKQPETAPVVSDGGGRSERKPAETMASGAEMSSQEDST---TTNAFNEGSLKHHKKNQVEHSSASSES----EKGRYRVQQAGRQTSAVKVVCELDSCSRTAKFGVHGIVRYC 688
BLAST of mRNA_H-paniculata_contig2156.5688.1 vs. uniprot
Match: A0A6H5KYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF0_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 4.430e-5 Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 1630 PSEEIRILQAARESARAAAEASGSGRRARVPSIKALEAAGMAEVEGAQWMSRKRQQNEKWKQRDNKETVRESTELKKRLKVESAAKIAAGRMLSA 1914
PS E+ IL+ ARE+A+ AEASGSGRR R PS +ALEA+G +GAQWM+R+++ E R ++EL+K+ K A + G +L A
Sbjct: 377 PSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKA----------EQARVNSELRKKRKESREAGLKVGVVLEA 461
BLAST of mRNA_H-paniculata_contig2156.5688.1 vs. uniprot
Match: A0A6H5KLI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI4_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 5.680e-5 Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query: 1630 PSEEIRILQAARESARAAAEASGSGRRARVPSIKALEAAGMAEVEGAQWMSRKRQQNEKWKQRDNKETVRESTELKKRLKVESAAKIAAGRMLSA 1914
PS E+ IL+ ARE+A+ AEASGSGRR R PS +ALEA+G +GAQWM+R+++ E R ++EL+K+ K A + G +L A
Sbjct: 431 PSVEMLILRQAREAAKTEAEASGSGRRPRAPSRRALEASGRLRGDGAQWMTREKKA----------EQARVNSELRKKRKESREAGLKVGVVLEA 515 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2156.5688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2156.5688.1 >prot_H-paniculata_contig2156.5688.1 ID=prot_H-paniculata_contig2156.5688.1|Name=mRNA_H-paniculata_contig2156.5688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=747bp MLPCGNNPFTQGSSSANQPTMASEQAGCPSFTEDTSNQYQIEETPIAYGQback to top mRNA from alignment at H-paniculata_contig2156:4247..16758- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2156.5688.1 ID=mRNA_H-paniculata_contig2156.5688.1|Name=mRNA_H-paniculata_contig2156.5688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12512bp|location=Sequence derived from alignment at H-paniculata_contig2156:4247..16758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2156:4247..16758- >mRNA_H-paniculata_contig2156.5688.1 ID=mRNA_H-paniculata_contig2156.5688.1|Name=mRNA_H-paniculata_contig2156.5688.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4482bp|location=Sequence derived from alignment at H-paniculata_contig2156:4247..16758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |