mRNA_H-paniculata_contig21555.5686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21555.5686.1
Unique NamemRNA_H-paniculata_contig21555.5686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21555.5686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21555contigH-paniculata_contig21555:743..1699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size957
Cds size957
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929583.0872948-CDS-H-paniculata_contig21555:742..16991622929583.0872948-CDS-H-paniculata_contig21555:742..1699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21555 743..1699 -
1691480923.6043248-CDS-H-paniculata_contig21555:742..16991691480923.6043248-CDS-H-paniculata_contig21555:742..1699Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21555 743..1699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21555.5686.1prot_H-paniculata_contig21555.5686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21555 743..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21555.5686.1

>prot_H-paniculata_contig21555.5686.1 ID=prot_H-paniculata_contig21555.5686.1|Name=mRNA_H-paniculata_contig21555.5686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
GKENDDGGSGDGSSGDPINSRIGGARGDGGGVAIENGRRAVNERGGEAGD
TRNEDNGTTADGRGGNSGGGVGPSGGVGAGEGCENSSGSGGRNESSGSNE
SNENGNGGGGDTGDHGGGGSRRTTGRAAGGTGHAAGDWERGGTREIRNME
DTGSSDGGAGDADSFGREGRAGVNVDAEGRTARGAETEGRTGAGDKDDVR
SGEGDGGDGTRGGNGVSTESRGGRDGGRRRSGDGDGASGGDGGGFESGEI
RGGIGAAAGEAGRGAANGGRGGARGRRIGREGRTATGDGDGGGGDDGEGG
KAGDRSNSGGGNGCSGYGD
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mRNA from alignment at H-paniculata_contig21555:743..1699-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21555.5686.1 ID=mRNA_H-paniculata_contig21555.5686.1|Name=mRNA_H-paniculata_contig21555.5686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=957bp|location=Sequence derived from alignment at H-paniculata_contig21555:743..1699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGGAGAACGACGATGGCGGCAGCGGCGACGGAAGCAGCGGAGACCC
CATCAACTCTAGAATCGGAGGGGCACGAGGAGATGGCGGTGGCGTCGCCA
TTGAGAACGGACGCCGTGCTGTAAATGAACGAGGCGGTGAAGCAGGGGAT
ACGCGAAACGAGGATAACGGAACGACTGCTGACGGGAGGGGCGGAAATAG
CGGTGGCGGAGTAGGCCCCTCCGGCGGCGTAGGAGCCGGCGAAGGTTGTG
AAAACAGCAGCGGGTCAGGCGGCCGCAATGAAAGCAGTGGAAGTAATGAA
AGCAACGAAAACGGCAACGGCGGCGGTGGCGACACTGGCGACCATGGAGG
CGGAGGATCAAGAAGAACTACCGGCCGCGCTGCTGGTGGGACCGGGCATG
CCGCTGGCGACTGGGAGAGGGGTGGAACAAGGGAAATACGGAATATGGAA
GACACCGGAAGCAGCGACGGTGGCGCAGGTGACGCCGACAGCTTTGGGAG
AGAAGGAAGGGCTGGAGTCAACGTGGACGCCGAGGGGCGGACCGCCCGCG
GCGCAGAAACTGAAGGGCGGACAGGAGCAGGGGACAAGGATGACGTCAGG
AGTGGAGAAGGCGACGGCGGTGACGGTACAAGAGGCGGAAATGGCGTCAG
CACGGAAAGCCGCGGCGGCAGAGACGGAGGCAGACGCCGGAGTGGAGACG
GAGACGGCGCGAGCGGAGGTGACGGTGGCGGATTTGAGAGCGGAGAAATA
AGAGGAGGCATCGGCGCCGCCGCGGGTGAAGCCGGGCGCGGCGCTGCGAA
CGGGGGGCGAGGCGGAGCACGAGGAAGGCGGATTGGGAGGGAGGGGAGGA
CCGCTACAGGGGATGGGGACGGTGGCGGTGGTGACGATGGCGAAGGCGGG
AAGGCAGGCGACCGCAGCAACAGCGGTGGAGGAAATGGATGCAGCGGATA
CGGCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig21555:743..1699-

>mRNA_H-paniculata_contig21555.5686.1 ID=mRNA_H-paniculata_contig21555.5686.1|Name=mRNA_H-paniculata_contig21555.5686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig21555:743..1699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGGAGAACGACGATGGCGGCAGCGGCGACGGAAGCAGCGGAGACCC
CATCAACTCTAGAATCGGAGGGGCACGAGGAGATGGCGGTGGCGTCGCCA
TTGAGAACGGACGCCGTGCTGTAAATGAACGAGGCGGTGAAGCAGGGGAT
ACGCGAAACGAGGATAACGGAACGACTGCTGACGGGAGGGGCGGAAATAG
CGGTGGCGGAGTAGGCCCCTCCGGCGGCGTAGGAGCCGGCGAAGGTTGTG
AAAACAGCAGCGGGTCAGGCGGCCGCAATGAAAGCAGTGGAAGTAATGAA
AGCAACGAAAACGGCAACGGCGGCGGTGGCGACACTGGCGACCATGGAGG
CGGAGGATCAAGAAGAACTACCGGCCGCGCTGCTGGTGGGACCGGGCATG
CCGCTGGCGACTGGGAGAGGGGTGGAACAAGGGAAATACGGAATATGGAA
GACACCGGAAGCAGCGACGGTGGCGCAGGTGACGCCGACAGCTTTGGGAG
AGAAGGAAGGGCTGGAGTCAACGTGGACGCCGAGGGGCGGACCGCCCGCG
GCGCAGAAACTGAAGGGCGGACAGGAGCAGGGGACAAGGATGACGTCAGG
AGTGGAGAAGGCGACGGCGGTGACGGTACAAGAGGCGGAAATGGCGTCAG
CACGGAAAGCCGCGGCGGCAGAGACGGAGGCAGACGCCGGAGTGGAGACG
GAGACGGCGCGAGCGGAGGTGACGGTGGCGGATTTGAGAGCGGAGAAATA
AGAGGAGGCATCGGCGCCGCCGCGGGTGAAGCCGGGCGCGGCGCTGCGAA
CGGGGGGCGAGGCGGAGCACGAGGAAGGCGGATTGGGAGGGAGGGGAGGA
CCGCTACAGGGGATGGGGACGGTGGCGGTGGTGACGATGGCGAAGGCGGG
AAGGCAGGCGACCGCAGCAACAGCGGTGGAGGAAATGGATGCAGCGGATA
CGGCGACGGCAAGGAGAACGACGATGGCGGCAGCGGCGACGGAAGCAGCG
GAGACCCCATCAACTCTAGAATCGGAGGGGCACGAGGAGATGGCGGTGGC
GTCGCCATTGAGAACGGACGCCGTGCTGTAAATGAACGAGGCGGTGAAGC
AGGGGATACGCGAAACGAGGATAACGGAACGACTGCTGACGGGAGGGGCG
GAAATAGCGGTGGCGGAGTAGGCCCCTCCGGCGGCGTAGGAGCCGGCGAA
GGTTGTGAAAACAGCAGCGGGTCAGGCGGCCGCAATGAAAGCAGTGGAAG
TAATGAAAGCAACGAAAACGGCAACGGCGGCGGTGGCGACACTGGCGACC
ATGGAGGCGGAGGATCAAGAAGAACTACCGGCCGCGCTGCTGGTGGGACC
GGGCATGCCGCTGGCGACTGGGAGAGGGGTGGAACAAGGGAAATACGGAA
TATGGAAGACACCGGAAGCAGCGACGGTGGCGCAGGTGACGCCGACAGCT
TTGGGAGAGAAGGAAGGGCTGGAGTCAACGTGGACGCCGAGGGGCGGACC
GCCCGCGGCGCAGAAACTGAAGGGCGGACAGGAGCAGGGGACAAGGATGA
CGTCAGGAGTGGAGAAGGCGACGGCGGTGACGGTACAAGAGGCGGAAATG
GCGTCAGCACGGAAAGCCGCGGCGGCAGAGACGGAGGCAGACGCCGGAGT
GGAGACGGAGACGGCGCGAGCGGAGGTGACGGTGGCGGATTTGAGAGCGG
AGAAATAAGAGGAGGCATCGGCGCCGCCGCGGGTGAAGCCGGGCGCGGCG
CTGCGAACGGGGGGCGAGGCGGAGCACGAGGAAGGCGGATTGGGAGGGAG
GGGAGGACCGCTACAGGGGATGGGGACGGTGGCGGTGGTGACGATGGCGA
AGGCGGGAAGGCAGGCGACCGCAGCAACAGCGGTGGAGGAAATGGATGCA
GCGGATACGGCGAC
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