mRNA_H-paniculata_contig21534.5678.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21534.5678.1
Unique NamemRNA_H-paniculata_contig21534.5678.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: D7FKH6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH6_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.620e-44
Identity = 77/116 (66.38%), Postives = 95/116 (81.90%), Query Frame = 1
Query:    1 QDALEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKVRTTS 348
            QDALEV +R+VD  DD FGR HGVY SAL+D ALMLKS+G+   AT+TYLKALEVYR  YKGEEN SFA+TLHNLGM F+AM++    LE++PL+ERA E+F+RCV+IREK+ T +
Sbjct:  151 QDALEVAERLVDQVDDHFGRAHGVYGSALSDMALMLKSMGRHQEATETYLKALEVYRAVYKGEENASFASTLHNLGMLFRAMAEDSKKLEKIPLMERAAESFERCVQIREKILTNN 266          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A1V9Z3R8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z3R8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-13
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:    1 QDALEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREK 333
            + AL++ +   D   + FG +H VYAS LN+ ALM K++ +L  A +TY +AL VY+    GE + SFA T+HNLG  ++  S   + +++V  ++ A E FQ  + IR++
Sbjct:  295 ESALDIAEICRDNVKEHFGTEHPVYASTLNNIALMQKNLSKLTEAIETYEEALRVYKECV-GENHASFATTMHNLGGVYRLQSHSLSGMKKVEAMDYALEYFQESLRIRQE 404          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A1V9Z175_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z175_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-13
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 QDALEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREK 333
            + AL++     D   + FG+ H VYAS LN+ ALM K++ QL  A  TY +AL VY+    GE + SFA TLHNLG  ++  S   + +++V  L+ A + FQ  + IR++
Sbjct:  301 ESALDMATICRDRVAEHFGKDHPVYASTLNNMALMQKNMSQLTEAIATYEEALRVYKECV-GESHASFATTLHNLGGVYRLQSHILSGMQKVEALDNALDAFQESLRIRKE 410          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A067CX27_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CX27_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 2.240e-13
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    7 ALEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREK 333
            AL++     D   D FG  H VYAS LN+ ALM K++ QL  A  TY +AL VY+    GE + SFA TLHNLG  ++  S   + +++V  L+ A + FQ  + IR++
Sbjct:   75 ALDMALICRDTVKDHFGNDHPVYASTLNNIALMQKNLSQLTDAIATYEEALRVYKECV-GEGHASFATTLHNLGGVYRLQSHVLSGMQKVEALDNALDCFQESLRIRKE 182          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A6G0W6Z6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6Z6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.830e-12
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKV 336
            LE+ Q   D   D  G  H VYAS LN+ ALM K++ QL  +  TY  AL VY T   GE++ S+A TLHNLG  ++  S   + + +V  L++A E F+  + +R ++
Sbjct:   58 LEIAQICRDAVKDHLGEDHPVYASTLNNVALMQKNLTQLDESISTYEAALRVY-TNCVGEKHASWATTLHNLGGVYRLKSHGLSGMNKVAALDQALECFEESLRVRREI 165          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A024UG34_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG34_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.080e-12
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKV 336
            LE+ +   D   D FG  H VYAS LN+ ALM K++ QL  A ++Y  AL VY++   GE + S+A TLHNLG  ++  +   + +++V  L+ A E F+  + +R ++
Sbjct:   72 LEMAEICRDAVRDHFGDDHPVYASTLNNLALMQKNLSQLDEAIESYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHSLSGMKKVEGLDHALECFEESLRVRREI 179          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: W4GGN5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGN5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.020e-10
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKV 336
            LE+ +   D   D FG  H VYAS LN+ ALM K++  L  A  +Y  AL VY++   GE + S+A TLHNLG  ++  +   + +++V  ++ A E F+  + +R  +
Sbjct:   73 LEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDI 180          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A397DE51_9STRA (EF-hand domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DE51_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.480e-10
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKV 336
            LE+ +   D   D FG  H VYAS LN+ ALM K++  L  A  +Y  AL VY++   GE + S+A TLHNLG  ++  +   + +++V  ++ A E F+  + +R  +
Sbjct:   70 LEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFEESLRVRRDI 177          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A3L6VBZ1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VBZ1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.470e-10
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQ 309
            LE+ +   D   D FG  H VYAS LN+ ALM K++  L  A  +Y  AL VY++   GE + S+A TLHNLG  ++  +   + +++V  ++ A E F+
Sbjct:   73 LEMAEICRDTVRDHFGEDHPVYASTLNNLALMQKNLSLLDEAIGSYEAALRVYKSCV-GENHASWATTLHNLGGVYRLQAHNLSGMKKVEGIDHALECFE 171          
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Match: A0A485LCH3_9STRA (Aste57867_19411 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LCH3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.070e-10
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query:   10 LEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYLKALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEETFQRCVEIREKV 336
            LE+ +   D     FG +H VYAS LN+ ALM K++  L  +  TY  AL VY+ A  GE + S+A TLHNLG   +  S     ++++  L+ A E F+  + +R  +
Sbjct:   79 LEIAEICRDTVKVHFGEEHPVYASTLNNMALMQKNLSLLEESIATYEHALRVYK-ACVGENHASWATTLHNLGGVHRLHSHALTGMKKIESLDLALECFEESLRVRRDI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21534.5678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FKH6_ECTSI4.620e-4466.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1V9Z3R8_9STRA1.100e-1337.84Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9Z175_9STRA1.100e-1339.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CX27_SAPPC2.240e-1341.28Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0W6Z6_9STRA1.830e-1239.45Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UG34_9STRA2.080e-1237.61Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4GGN5_9STRA1.020e-1035.78Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]
A0A397DE51_9STRA1.480e-1035.78EF-hand domain-containing protein (Fragment) n=5 T... [more]
A0A3L6VBZ1_9STRA2.470e-1038.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485LCH3_9STRA5.070e-1036.70Aste57867_19411 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21534contigH-paniculata_contig21534:3166..4098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.7e-37
Seed eggNOG ortholog2880.D7FKH6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size348
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929582.2637978-CDS-H-paniculata_contig21534:3165..33271622929582.2637978-CDS-H-paniculata_contig21534:3165..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21534 3166..3327 +
1691480923.2745013-CDS-H-paniculata_contig21534:3165..33271691480923.2745013-CDS-H-paniculata_contig21534:3165..3327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21534 3166..3327 +
1622929582.2788122-CDS-H-paniculata_contig21534:3912..40981622929582.2788122-CDS-H-paniculata_contig21534:3912..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21534 3913..4098 +
1691480923.283443-CDS-H-paniculata_contig21534:3912..40981691480923.283443-CDS-H-paniculata_contig21534:3912..4098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21534 3913..4098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21534.5678.1prot_H-paniculata_contig21534.5678.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21534 3166..4098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21534.5678.1

>prot_H-paniculata_contig21534.5678.1 ID=prot_H-paniculata_contig21534.5678.1|Name=mRNA_H-paniculata_contig21534.5678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
QDALEVTQRVVDMTDDLFGRKHGVYASALNDQALMLKSIGQLAAATDTYL
KALEVYRTAYKGEENVSFAATLHNLGMTFKAMSQQGNSLERVPLLERAEE
TFQRCVEIREKVRTTS
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mRNA from alignment at H-paniculata_contig21534:3166..4098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21534.5678.1 ID=mRNA_H-paniculata_contig21534.5678.1|Name=mRNA_H-paniculata_contig21534.5678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=933bp|location=Sequence derived from alignment at H-paniculata_contig21534:3166..4098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATGCGCTCGAAGTCACGCAGCGGGTGGTTGACATGACGGACGACCT GTTCGGGAGGAAGCACGGAGTGTACGCCAGCGCCTTGAACGACCAGGCGC TTATGCTCAAGTCTATTGGCCAACTCGCCGCTGCGACGGACACTTATCTT AAGGCGCTTGAGGTAAATCATGTTGCCTGTCGTTCATGGTCTTGCGTTGT CCAAGGGTAGACCGGCAGGGGGCCATGAAGATTGTACGTGAACCAATCCG CCGTTTTGTTCTGACAATGCATGATATGCGGCATTGTGGGTATATATACT GTGCAACAGGTTCACTGTGGGGCAGCCACGGGGTTGTTCTGGTCTGAACA CATGAGTCTTTCTCGCCGTCTTGCCGCTGCCTCTGTGGATTGTTAGAGTA AATCGCACTACGAATATACAGCTTGTTTCAGAAAGTAAAACCCTCATGCC CTGATGTACGTCAGTTCTCTAGTGGCTTAACTTAGTGCATATGCCTTATT CGACGTATTTTGAACGGACGCGTTGTTGTTCTTGTTGTTGTTGCCGTTCT TGTTGTCATCGTTGTTTTGTACACTACAACTATAGTAAGCCATTCTACTA ATTATTGAGCCACACGGACGGGACGGGACACGCACAAGCTTGTTTCAAAA AGAACCAAAAGAGCTATTGAAAAAAGACCTCCAACAAGAATGTGTCTAAG ATGAAAAGTCTCGCGAATAAAAACACGGGAAAATTAAAAACCGACAGGTG TACCGGACTGCGTATAAGGGCGAAGAGAACGTCTCGTTCGCCGCCACGCT GCACAACCTCGGCATGACGTTCAAGGCGATGTCGCAGCAAGGCAACAGCC TGGAAAGAGTGCCCCTGCTTGAGCGAGCAGAGGAGACGTTCCAGCGATGC GTCGAGATACGCGAAAAGGTTCGAACGACAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig21534:3166..4098+

>mRNA_H-paniculata_contig21534.5678.1 ID=mRNA_H-paniculata_contig21534.5678.1|Name=mRNA_H-paniculata_contig21534.5678.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig21534:3166..4098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATGCGCTCGAAGTCACGCAGCGGGTGGTTGACATGACGGACGACCT
GTTCGGGAGGAAGCACGGAGTGTACGCCAGCGCCTTGAACGACCAGGCGC
TTATGCTCAAGTCTATTGGCCAACTCGCCGCTGCGACGGACACTTATCTT
AAGGCGCTTGAGCAGGATGCGCTCGAAGTCACGCAGCGGGTGGTTGACAT
GACGGACGACCTGTTCGGGAGGAAGCACGGAGTGTACGCCAGCGCCTTGA
ACGACCAGGCGCTTATGCTCAAGTCTATTGGCCAACTCGCCGCTGCGACG
GACACTTATCTTAAGGCGCTTGAGGTGTACCGGACTGCGTATAAGGGCGA
AGAGAACGTCTCGTTCGCCGCCACGCTGCACAACCTCGGCATGACGTTCA
AGGCGATGTCGCAGCAAGGCAACAGCCTGGAAAGAGTGCCCCTGCTTGAG
CGAGCAGAGGAGACGTTCCAGCGATGCGTCGAGATACGCGAAAAGGTTCG
AACGACAAGTGTGTACCGGACTGCGTATAAGGGCGAAGAGAACGTCTCGT
TCGCCGCCACGCTGCACAACCTCGGCATGACGTTCAAGGCGATGTCGCAG
CAAGGCAACAGCCTGGAAAGAGTGCCCCTGCTTGAGCGAGCAGAGGAGAC
GTTCCAGCGATGCGTCGAGATACGCGAAAAGGTTCGAACGACAAGT
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