mRNA_H-paniculata_contig21533.5677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21533.5677.1
Unique NamemRNA_H-paniculata_contig21533.5677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: D7FXT2_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 2.110e-19
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVY 171
            + VELSYLAQKVSEFDR SP TWCVVGNCFSLQKEHETALRFFQ  + L  ++ + Y
Sbjct:  166 RDVELSYLAQKVSEFDRRSPQTWCVVGNCFSLQKEHETALRFFQRAIQLDADMTYAY 222
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A6H5JEK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK2_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 3.150e-19
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVY 171
            + VELSYLAQKVSEFDR SP TWCVVGNCFSLQKEHETALRFFQ  + L  ++ + Y
Sbjct:  721 RDVELSYLAQKVSEFDRRSPQTWCVVGNCFSLQKEHETALRFFQRAIQLDADMTYAY 777
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A7S2BNQ0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BNQ0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.060e-16
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    4 QVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVY 171
            +VEL YLAQ+VSEFD+ SP  WCVVGNCFSLQKEHETAL+FFQ  +  QV+  F Y
Sbjct:    1 EVELCYLAQRVSEFDKYSPEVWCVVGNCFSLQKEHETALKFFQRAI--QVDPEFTY 54
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A7S1URM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1URM1_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVYYLS 180
            ++VELS+LAQ+V+EFDR++P TWCVVGNCFSLQK+HETAL FF+  + L     + + LS
Sbjct:  108 REVELSHLAQRVTEFDRMAPETWCVVGNCFSLQKDHETALTFFRRSIQLDSTFAYAHTLS 167
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: C1E0V5_MICCC (Anaphase promoting complex 3 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E0V5_MICCC)

HSP 1 Score: 79.3 bits (194), Expect = 7.640e-16
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQ 132
            K+VELSYLAQ+  + DRL+P TWCV+GNCFSLQKEHETALRFFQ
Sbjct:  628 KEVELSYLAQECVQLDRLAPQTWCVLGNCFSLQKEHETALRFFQ 671
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A5D6Y415_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y415_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.940e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVY 171
            K+VELSYLAQ+V+EFD+LS   WCV GNCFSLQKEH+TAL FFQ  +  Q+N  F Y
Sbjct:  369 KEVELSYLAQQVTEFDKLSSEAWCVAGNCFSLQKEHDTALTFFQRAI--QLNPAFTY 423
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A7S3VB12_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VB12_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.950e-15
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVYYLS 180
            K+VELS LAQ+VS+FDRL P TWCVVGNCFSLQKEH+TAL FF+  + L     + + LS
Sbjct:  813 KEVELSNLAQRVSDFDRLCPETWCVVGNCFSLQKEHKTALTFFRRSIQLDPTFTYAHTLS 872
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A8K1CCU8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCU8_PYTOL)

HSP 1 Score: 77.8 bits (190), Expect = 2.650e-15
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQVNVFFVY 171
            K+V LSYLAQ+V+EFD+LSP  WCV GNCFSLQKEH+TAL FFQ  +  Q++ ++ Y
Sbjct:  450 KEVGLSYLAQQVTEFDKLSPEAWCVAGNCFSLQKEHDTALSFFQRSI--QLDPYYTY 504
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BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: D8RCQ8_SELML (Uncharacterized protein HBT1-1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RCQ8_SELML)

HSP 1 Score: 77.4 bits (189), Expect = 3.620e-15
Identity = 34/44 (77.27%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQ 132
            K VELSYLAQ+V   DRLSP  WCV+GNCFSLQK+HETAL+FFQ
Sbjct:  409 KDVELSYLAQEVVSMDRLSPQAWCVIGNCFSLQKDHETALKFFQ 452
[Close]
BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Match: A0A7R9ZMF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMF0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.520e-15
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFF 129
            K VEL+YLAQK  +FDR+SP  WC+VGNC SLQKEHETAL FF
Sbjct:   76 KDVELAYLAQKAVDFDRMSPEAWCIVGNCLSLQKEHETALVFF 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21533.5677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT2_ECTSI2.110e-1973.68Putative subunit of the Anaphase Promoting Complex... [more]
A0A6H5JEK2_9PHAE3.150e-1973.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2BNQ0_9STRA1.060e-1669.64Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1URM1_9STRA1.080e-1660.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
C1E0V5_MICCC7.640e-1679.55Anaphase promoting complex 3 n=1 Tax=Micromonas co... [more]
A0A5D6Y415_9STRA1.940e-1566.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3VB12_9STRA1.950e-1563.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A8K1CCU8_PYTOL2.650e-1563.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D8RCQ8_SELML3.620e-1577.27Uncharacterized protein HBT1-1 n=4 Tax=Selaginella... [more]
A0A7R9ZMF0_9STRA5.520e-1574.42Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21533contigH-paniculata_contig21533:3959..4138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7FXT2
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.metaphase/anaphase transition of mitotic cell cycle
EggNOG OGsCOG0457@1,KOG1126@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929582.2282135-CDS-H-paniculata_contig21533:3958..41381622929582.2282135-CDS-H-paniculata_contig21533:3958..4138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21533 3959..4138 +
1691480923.2631812-CDS-H-paniculata_contig21533:3958..41381691480923.2631812-CDS-H-paniculata_contig21533:3958..4138Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21533 3959..4138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21533.5677.1prot_H-paniculata_contig21533.5677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21533 3959..4138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21533.5677.1

>prot_H-paniculata_contig21533.5677.1 ID=prot_H-paniculata_contig21533.5677.1|Name=mRNA_H-paniculata_contig21533.5677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
KQVELSYLAQKVSEFDRLSPYTWCVVGNCFSLQKEHETALRFFQVKVILQ
VNVFFVYYLS
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mRNA from alignment at H-paniculata_contig21533:3959..4138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21533.5677.1 ID=mRNA_H-paniculata_contig21533.5677.1|Name=mRNA_H-paniculata_contig21533.5677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig21533:3959..4138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGTGGAATTGTCGTACTTGGCCCAAAAGGTCAGCGAGTTCGACAG
GCTCTCTCCTTACACTTGGTGCGTTGTGGGCAATTGCTTCTCCCTGCAGA
AAGAACACGAAACTGCTCTTCGGTTCTTCCAGGTAAAAGTTATACTCCAG
GTAAATGTGTTTTTTGTCTATTATCTCTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig21533:3959..4138+

>mRNA_H-paniculata_contig21533.5677.1 ID=mRNA_H-paniculata_contig21533.5677.1|Name=mRNA_H-paniculata_contig21533.5677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig21533:3959..4138+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACAGGTGGAATTGTCGTACTTGGCCCAAAAGGTCAGCGAGTTCGACAG
GCTCTCTCCTTACACTTGGTGCGTTGTGGGCAATTGCTTCTCCCTGCAGA
AAGAACACGAAACTGCTCTTCGGTTCTTCCAGGTAAAAGTTATACTCCAG
GTAAATGTGTTTTTTGTCTATTATCTCTCTAAACAGGTGGAATTGTCGTA
CTTGGCCCAAAAGGTCAGCGAGTTCGACAGGCTCTCTCCTTACACTTGGT
GCGTTGTGGGCAATTGCTTCTCCCTGCAGAAAGAACACGAAACTGCTCTT
CGGTTCTTCCAGGTAAAAGTTATACTCCAGGTAAATGTGTTTTTTGTCTA
TTATCTCTCT
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