mRNA_H-paniculata_contig21525.5676.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21525.5676.1
Unique NamemRNA_H-paniculata_contig21525.5676.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A6H5KM59_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM59_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 8.170e-38
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQ 189
            IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVV+KFNETNDLQLIARAHQ
Sbjct:  166 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVDKFNETNDLQLIARAHQ 228
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BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A1V9ZNG4_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNG4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.260e-37
Identity = 56/64 (87.50%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IR++DRKQEVPHDGAMCDL+WSDPE+IDGWGLSPRGAGYLFGGDVVEKFN+TND+QLI RAHQ+
Sbjct:   98 IRIIDRKQEVPHDGAMCDLMWSDPEDIDGWGLSPRGAGYLFGGDVVEKFNQTNDIQLICRAHQL 161
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BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A0W8DFB3_PHYNI (Serine/threonine-protein phosphatase n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DFB3_PHYNI)

HSP 1 Score: 132 bits (331), Expect = 8.110e-37
Identity = 56/64 (87.50%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IR++DRKQEVPHDGAMCDL+WSDPE+IDGWGLSPRGAGYLFGGDVVEKFN+TND+QLI RAHQ+
Sbjct:  135 IRIIDRKQEVPHDGAMCDLMWSDPEDIDGWGLSPRGAGYLFGGDVVEKFNQTNDIQLICRAHQL 198
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A418AYW5_9STRA (Serine/threonine-protein phosphatase n=4 Tax=Oomycota TaxID=4762 RepID=A0A418AYW5_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.160e-36
Identity = 55/64 (85.94%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IR++DRKQEVPHDGAMCDL+WSDPE+IDGWGLSPRGAGYLFGGDVV+KFN+TND+QLI RAHQ+
Sbjct:  141 IRIIDRKQEVPHDGAMCDLMWSDPEDIDGWGLSPRGAGYLFGGDVVDKFNQTNDIQLICRAHQL 204
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A7S2EUB2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EUB2_TRICV)

HSP 1 Score: 126 bits (317), Expect = 6.750e-36
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IRV+DRKQEVPHDGAMCDL+WSDPEEI+GWGLSPRGAGYLFGGDVV  FNE NDL LIARAHQ+
Sbjct:   64 IRVIDRKQEVPHDGAMCDLMWSDPEEIEGWGLSPRGAGYLFGGDVVAMFNERNDLDLIARAHQL 127
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A6V1QJP1_HETAK (Serine/threonine-protein phosphatase n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A6V1QJP1_HETAK)

HSP 1 Score: 131 bits (330), Expect = 9.180e-36
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWG+SPRGAGYLFGGDVVEKFN+TN++ LIARAHQ+
Sbjct:  216 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGISPRGAGYLFGGDVVEKFNQTNNVSLIARAHQL 279
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A024TIH8_9STRA (Serine/threonine-protein phosphatase n=27 Tax=Oomycota TaxID=4762 RepID=A0A024TIH8_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.120e-35
Identity = 55/64 (85.94%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IR++DRKQEVPHDGAMCDL+WSDPE+IDGWGLSPRGAGYLFGGDVV+KFN+TND+QLI RAHQ+
Sbjct:  192 IRIIDRKQEVPHDGAMCDLMWSDPEDIDGWGLSPRGAGYLFGGDVVDKFNQTNDIQLICRAHQL 255
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A7R9U6J8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6J8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.160e-35
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IRV+DRKQEVPHDGAMCDL+WSDP+EI+GWGLSPRGAGYLFGGDVVEKFNE N L LIARAHQ+
Sbjct:   54 IRVIDRKQEVPHDGAMCDLMWSDPDEIEGWGLSPRGAGYLFGGDVVEKFNEMNGLTLIARAHQL 117
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A7S2Y1A2_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1A2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.170e-35
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IRV+DRKQEVPHDGAMCDLLWSDPEEI+GWG+SPRGAGYLFGGDVVEKFN+TNDL LIARAHQ+
Sbjct:  211 IRVIDRKQEVPHDGAMCDLLWSDPEEIEGWGISPRGAGYLFGGDVVEKFNQTNDLCLIARAHQL 274
[Close]
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Match: A0A3R7WQQ7_9STRA (Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Saprolegniaceae TaxID=4764 RepID=A0A3R7WQQ7_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.400e-35
Identity = 55/64 (85.94%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFNETNDLQLIARAHQV 192
            IR++DRKQEVPHDGAMCDL+WSDPE+IDGWGLSPRGAGYLFGGDVV+KFN+TND+QLI RAHQ+
Sbjct:  203 IRIIDRKQEVPHDGAMCDLMWSDPEDIDGWGLSPRGAGYLFGGDVVDKFNQTNDIQLICRAHQL 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21525.5676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM59_9PHAE8.170e-3898.41Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A1V9ZNG4_9STRA4.260e-3787.50Serine/threonine-protein phosphatase n=1 Tax=Thrau... [more]
A0A0W8DFB3_PHYNI8.110e-3787.50Serine/threonine-protein phosphatase n=1 Tax=Phyto... [more]
A0A418AYW5_9STRA3.160e-3685.94Serine/threonine-protein phosphatase n=4 Tax=Oomyc... [more]
A0A7S2EUB2_TRICV6.750e-3687.50Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6V1QJP1_HETAK9.180e-3690.63Serine/threonine-protein phosphatase n=2 Tax=Ochro... [more]
A0A024TIH8_9STRA1.120e-3585.94Serine/threonine-protein phosphatase n=27 Tax=Oomy... [more]
A0A7R9U6J8_9STRA1.160e-3587.50Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2Y1A2_9STRA1.170e-3590.63Serine/threonine-protein phosphatase n=1 Tax=Fibro... [more]
A0A3R7WQQ7_9STRA1.400e-3585.94Serine/threonine-protein phosphatase (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21525contigH-paniculata_contig21525:1095..1286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.2e-30
Seed eggNOG ortholog2880.D7G7H3
Preferred namePPP4C
KEGG koko:K15423
KEGG Pathwayko04922,map04922
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000278,GO:0000775,GO:0000902,GO:0000904,GO:0001525,GO:0001568,GO:0001944,GO:0003002,GO:0003674,GO:0003824,GO:0004704,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005521,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006282,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007017,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007389,GO:0007399,GO:0007409,GO:0007417,GO:0007420,GO:0007623,GO:0008150,GO:0008152,GO:0008287,GO:0008589,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009648,GO:0009649,GO:0009653,GO:0009799,GO:0009855,GO:0009889,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010569,GO:0010646,GO:0010647,GO:0010648,GO:0015630,GO:0016020,GO:0016043,GO:0016310,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0021952,GO:0021953,GO:0021954,GO:0021955,GO:0022008,GO:0022414,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0030289,GO:0030510,GO:0030513,GO:0031175,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032922,GO:0032989,GO:0032990,GO:0032991,GO:0034097,GO:0035239,GO:0035295,GO:0035556,GO:0036211,GO:0038061,GO:0042221,GO:0042578,GO:0042752,GO:0043153,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045879,GO:0047485,GO:0048262,GO:0048264,GO:0048468,GO:0048511,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051252,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0060322,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0070555,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071944,GO:0072357,GO:0072358,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090100,GO:0090287,GO:0098687,GO:0098772,GO:0120036,GO:0120039,GO:0140096,GO:1901564,GO:1902494,GO:1903293,GO:1903506,GO:2000112,GO:2000779,GO:2001020,GO:2001141
EggNOG free text desc.Serine threonine-protein phosphatase
EggNOG OGsCOG0639@1,KOG0372@2759
Ec32 ortholog descriptionProtein phosphatase 4 catalytic subunit
Ec32 orthologEc-02_000270.1
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03400
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929582.1924713-CDS-H-paniculata_contig21525:1094..12861622929582.1924713-CDS-H-paniculata_contig21525:1094..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21525 1095..1286 +
1691480923.2443495-CDS-H-paniculata_contig21525:1094..12861691480923.2443495-CDS-H-paniculata_contig21525:1094..1286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21525 1095..1286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21525.5676.1prot_H-paniculata_contig21525.5676.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21525 1095..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21525.5676.1

>prot_H-paniculata_contig21525.5676.1 ID=prot_H-paniculata_contig21525.5676.1|Name=mRNA_H-paniculata_contig21525.5676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
IRVLDRKQEVPHDGAMCDLLWSDPEEIDGWGLSPRGAGYLFGGDVVEKFN
ETNDLQLIARAHQV
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mRNA from alignment at H-paniculata_contig21525:1095..1286+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21525.5676.1 ID=mRNA_H-paniculata_contig21525.5676.1|Name=mRNA_H-paniculata_contig21525.5676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig21525:1095..1286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGAGTCCTGGACCGCAAACAAGAGGTGCCACACGATGGCGCGATGTG
CGATTTATTATGGTCAGATCCTGAGGAGATCGATGGCTGGGGCCTCAGTC
CTAGGGGAGCAGGGTATCTGTTCGGAGGGGATGTGGTGGAAAAATTCAAC
GAGACGAACGACTTGCAGCTTATCGCGCGAGCACATCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig21525:1095..1286+

>mRNA_H-paniculata_contig21525.5676.1 ID=mRNA_H-paniculata_contig21525.5676.1|Name=mRNA_H-paniculata_contig21525.5676.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig21525:1095..1286+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCCGAGTCCTGGACCGCAAACAAGAGGTGCCACACGATGGCGCGATGTG
CGATTTATTATGGTCAGATCCTGAGGAGATCGATGGCTGGGGCCTCAGTC
CTAGGGGAGCAGGGTATCTGTTCGGAGGGGATGTGGTGGAAAAATTCAAC
GAGACGAACGACTTGCAGCTTATCGCGCGAGCACATCAGGTGATCCGAGT
CCTGGACCGCAAACAAGAGGTGCCACACGATGGCGCGATGTGCGATTTAT
TATGGTCAGATCCTGAGGAGATCGATGGCTGGGGCCTCAGTCCTAGGGGA
GCAGGGTATCTGTTCGGAGGGGATGTGGTGGAAAAATTCAACGAGACGAA
CGACTTGCAGCTTATCGCGCGAGCACATCAGGTG
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