mRNA_H-paniculata_contig21520.5675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21520.5675.1
Unique NamemRNA_H-paniculata_contig21520.5675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21520.5675.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 6.200e-6
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    4 EVEIIKYKMQEHVVETREATEEARVRALFPDHHSHFEDILA 126
            E EI+KYKMQEHVVE+ EA   A++RALFPD+HS F+DI+A
Sbjct: 3063 EAEILKYKMQEHVVESEEAINLAKLRALFPDYHSGFKDIMA 3103
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BLAST of mRNA_H-paniculata_contig21520.5675.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.630e-5
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 EVEIIKYKMQEHVVETREATEEARVRALFPDHHSHFEDILAIDT 135
            E EI+K+KMQEHVVE+ EA   A++RALFPD+ S FEDI+A +T
Sbjct: 2238 EAEILKFKMQEHVVESEEAIRLAKLRALFPDYQSGFEDIIAENT 2281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21520.5675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL28_ECTSI6.200e-668.29Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE3.630e-563.64Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21520contigH-paniculata_contig21520:1903..3873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size722
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21520.5675.1prot_H-paniculata_contig21520.5675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21520 1930..3556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.9908605-UTR-H-paniculata_contig21520:1902..19291622929581.9908605-UTR-H-paniculata_contig21520:1902..1929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21520 1903..1929 +
1691480923.186102-UTR-H-paniculata_contig21520:1902..19291691480923.186102-UTR-H-paniculata_contig21520:1902..1929Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21520 1903..1929 +
1622929582.0543213-UTR-H-paniculata_contig21520:3556..38731622929582.0543213-UTR-H-paniculata_contig21520:3556..3873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21520 3557..3873 +
1691480923.2228782-UTR-H-paniculata_contig21520:3556..38731691480923.2228782-UTR-H-paniculata_contig21520:3556..3873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21520 3557..3873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929582.01139-CDS-H-paniculata_contig21520:1929..19441622929582.01139-CDS-H-paniculata_contig21520:1929..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 1930..1944 +
1691480923.1954324-CDS-H-paniculata_contig21520:1929..19441691480923.1954324-CDS-H-paniculata_contig21520:1929..1944Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 1930..1944 +
1622929582.0301738-CDS-H-paniculata_contig21520:2995..31451622929582.0301738-CDS-H-paniculata_contig21520:2995..3145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 2996..3145 +
1691480923.2039976-CDS-H-paniculata_contig21520:2995..31451691480923.2039976-CDS-H-paniculata_contig21520:2995..3145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 2996..3145 +
1622929582.0438974-CDS-H-paniculata_contig21520:3343..35561622929582.0438974-CDS-H-paniculata_contig21520:3343..3556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 3344..3556 +
1691480923.2145987-CDS-H-paniculata_contig21520:3343..35561691480923.2145987-CDS-H-paniculata_contig21520:3343..3556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 3344..3556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21520.5675.1

>prot_H-paniculata_contig21520.5675.1 ID=prot_H-paniculata_contig21520.5675.1|Name=mRNA_H-paniculata_contig21520.5675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MQEHVVETREATEEARVRALFPDHHSHFEDILAIDTHDTIPDAAVAAAST
ADSDDANQQCFHLYCLLTGEWQGTAEEMDGEVKNVLGVQPSSISSVPGED
SAGRLLKVSKTPDWPSATSCFPGRQ*
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mRNA from alignment at H-paniculata_contig21520:1903..3873+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21520.5675.1 ID=mRNA_H-paniculata_contig21520.5675.1|Name=mRNA_H-paniculata_contig21520.5675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1971bp|location=Sequence derived from alignment at H-paniculata_contig21520:1903..3873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAGGTGGAAATCATCAAATACAAGATGCAGGAGCATGTGGTGCGTTC
TTTCGTGCTTGTTCTTGCAAACGCTTTGGTGACTACAAGTAATTGCCCTA
CATGTGTCGAACGCCTTTTAGCAAAAATACGCCGGTGCACATTGCTTGCA
ATGTATTCCATCGCTCAACTGGACTTTATGAGGTACAGCTTGGAAACGAA
CACGGAATGAGACATGTGCTGCACTGACACTGAGACTGGCAACCCTTGAG
CAAGTATTCCAGTAAGGAAGACGTTCCCAATGAAGAAAAAAAGCTGTCCT
ATTTTCATGAGGATCAAGTAAGCTTCCACTCTAATTTTTTACTGACGGAA
CTCCATGATTTGAAGCCTCTCACATTCAGAATGTTTGTTTCACGTCCTGG
TCGTGAATGCTTTTCGCCTCGATTTATTGACGTGAATAGTGCATGCGCCA
TGGTGCTAATAATGGTTTGCATGAGGTGTTGCGTGCCTTATTGGCTGCTC
GTATAAATATCGCCAGGTATGTGTCGATGAGTGTCGTAAGCAAAGTGATG
AAAATAAGCTATCTTACGTTCGTGAGGACTATTAAGCAGATAACTCTAAT
TTTTTCCCTGATGGCTGCTATGAAATCATTATTCACGTACATTACCATGG
ATACTCTGGCGATAATTTGCAAGGGGCTATTGTGAGCAGTCCCTCTCATC
GACTTGGTGTTCTTCCGCGATCCAGTGAAGTATGTCGCGAATGATCGTGC
GTGATGTGTTGGTATTTTCCCTTAATGCGATCGATTTCTGCGAGTTCCAG
GCATACTGGGTGCTTGTTCGATACCTTTTGTAATCGTCTCCCCTTGATGA
GAACGACTGCCTGTCAATTTCCCACGGTGCAAAGCATGGAACATTCTGTG
TGATCTCCTGTCATTGCGCATCCATGAGACGAGGAGCATTACATGAAAAA
GGTACGTTGTGTTAATTCGTACACGTGTGCAGTAGGCGACACTCCCTGCT
TGGCTGTTCCACGAACGACAACAGTGTTCAATTGACAACACTTCACAGGA
GTAAAGTCGTTTCGTGGCGATGGGTCGCTATCACGGTGCTCAGGTGGAGA
CGCGGGAGGCCACCGAAGAGGCCCGAGTCCGTGCACTCTTCCCTGACCAC
CACAGCCACTTCGAGGATATCCTGGCAATTGACACGCACGATACCATCCC
GGACGCTGCCGTGGCCGCTGCTTCTACGGCAGACAGTGATGATGTGCGAT
GGCGGGCTATCGAGTTGAAGAGCTGGCCGCTGCTGCTGATTGACAGCAAA
AAACATTCGTTTTGAAAGTGTAATTTGGTTGGTTGTGTTGTGGGTTGTAC
GTCGGTGGTCGTGCACTGGAAGTCATCCATCATGACAAGTCCAAGGTTAA
TGTTGCCGTGAACGCGTACACCTTTTGCCCCGACGCTGCAGGCGAACCAA
CAGTGCTTTCATCTCTACTGCCTACTCACTGGAGAATGGCAGGGGACAGC
GGAAGAGATGGATGGAGAAGTCAAGAATGTCCTTGGAGTACAACCGTCAT
CCATCTCGAGTGTACCTGGTGAAGATTCTGCCGGCCGGCTATTGAAGGTG
TCTAAGACGCCTGATTGGCCAAGCGCCACGTCGTGTTTTCCTGGCAGACA
GTGACATGGACTTGTTTCCGAATAGGAATATAAGGAGAGGGGAGTGGCCA
TGAACGAGAGTGCCTCCAGTTTCGGGGAGTCTCCTTTGGCCCATGCAAGA
AGTGGGGTTTGGTGGAGCTGCTGAGCAAAAGCGCCGTCTAACGGTAGAGT
CATGAGTTAATGTACATGAATCGAAAGTGAGACCGTGTGCCTGCATACCT
CATGCCTGTGACAGACGTTCACCTGGTGCGATGAGGAAAAAAGGTTTACT
TGTTCTTTCTATTCTGTAAGAGTCCTTCGAAGAAGGGATCCTCTCGTGAA
GAACAGACCCTCACACCGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21520:1903..3873+

>mRNA_H-paniculata_contig21520.5675.1 ID=mRNA_H-paniculata_contig21520.5675.1|Name=mRNA_H-paniculata_contig21520.5675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig21520:1903..3873+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAGCATGTGATGCAGGAGCATGTGGTGGAGACGCGGGAGGCCAC
CGAAGAGGCCCGAGTCCGTGCACTCTTCCCTGACCACCACAGCCACTTCG
AGGATATCCTGGCAATTGACACGCACGATACCATCCCGGACGCTGCCGTG
GCCGCTGCTTCTACGGCAGACAGTGATGATGTGGAGACGCGGGAGGCCAC
CGAAGAGGCCCGAGTCCGTGCACTCTTCCCTGACCACCACAGCCACTTCG
AGGATATCCTGGCAATTGACACGCACGATACCATCCCGGACGCTGCCGTG
GCCGCTGCTTCTACGGCAGACAGTGATGATGCGAACCAACAGTGCTTTCA
TCTCTACTGCCTACTCACTGGAGAATGGCAGGGGACAGCGGAAGAGATGG
ATGGAGAAGTCAAGAATGTCCTTGGAGTACAACCGTCATCCATCTCGAGT
GTACCTGGTGAAGATTCTGCCGGCCGGCTATTGAAGGTGTCTAAGACGCC
TGATTGGCCAAGCGCCACGTCGTGTTTTCCTGGCAGACAGTGAGCGAACC
AACAGTGCTTTCATCTCTACTGCCTACTCACTGGAGAATGGCAGGGGACA
GCGGAAGAGATGGATGGAGAAGTCAAGAATGTCCTTGGAGTACAACCGTC
ATCCATCTCGAGTGTACCTGGTGAAGATTCTGCCGGCCGGCTATTGAAGG
TGTCTAAGACGCCTGATTGGCCAAGCGCCACGTCGTGTTTTCCTGGCAGA
CAGTGA
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