mRNA_H-paniculata_contig21520.5673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21520.5673.1
Unique NamemRNA_H-paniculata_contig21520.5673.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21520.5673.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.380e-11
Identity = 60/160 (37.50%), Postives = 78/160 (48.75%), Query Frame = 1 
Query:   64 GPAQLLELVRSSLLLRFSSTSTSHVAIAANHGGCRQSADSTVHLTVMNVSARLGQFRTAMRLFRDVRTASSS-------TMTLLLEVGWVRLSDTLCPFDRL-ATSSNGIHTFAGVMSNCLPIGSAGR----KNWQSVEVVLREALSSCRDQRLVIGCES 507
            GP QLL L RSS LLR SST+     +A   GG R + D    LT+MN SARL Q+R AMR  RD+    +         +  L+++ W     TL  FD + A   +   TFA  +    P G  G      +W +V+  L  AL SC DQRL    +S
Sbjct: 1719 GPVQLLTLARSSFLLRLSSTAIFCGDVAP--GGKRNAVD----LTLMNASARLRQYRVAMRRVRDLAYGGNGGGGDPNGALKPLVKLAWASFCRTLGAFDEVQAREVDEPATFANAL---FPAGGDGSVSSSPSWGTVKEPLLRALRSCPDQRLAAQTDS 1869
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BLAST of mRNA_H-paniculata_contig21520.5673.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.360e-8
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1 
Query:  187 VHLTVMNVSARLGQFRTAMRLFRDVRTASSS--------TMTLLLEVGWVRLSDTLCPFDRL-ATSSNGIHTFAGVM-----SNCLPIGSAGRKNWQSVEVVLREALSSCRDQRL 489
            V LT+MN SARLGQFRTAMR  RD+               +  L+++ W R   TL  FD + AT      TFA  +      + +P+ ++    W +VE  LR+AL SC DQRL
Sbjct: 2608 VDLTLMNASARLGQFRTAMRRVRDLTYGGGGGWGGEPGGALKPLVQLAWARFCRTLGAFDDVQATGVEAPATFAAALFAAGGESSVPLSTS----WGTVEGPLRQALKSCPDQRL 2718
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21520.5673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCJ9_9PHAE7.380e-1137.50Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FL28_ECTSI1.360e-839.13Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21520contigH-paniculata_contig21520:4..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue8.1e-08
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929582.0950844-CDS-H-paniculata_contig21520:3..5101622929582.0950844-CDS-H-paniculata_contig21520:3..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 4..510 +
1691480923.231759-CDS-H-paniculata_contig21520:3..5101691480923.231759-CDS-H-paniculata_contig21520:3..510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21520 4..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21520.5673.1prot_H-paniculata_contig21520.5673.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21520 4..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21520.5673.1

>prot_H-paniculata_contig21520.5673.1 ID=prot_H-paniculata_contig21520.5673.1|Name=mRNA_H-paniculata_contig21520.5673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp
GAAKSPKGLYGGTAVRVGYSEGPAQLLELVRSSLLLRFSSTSTSHVAIAA
NHGGCRQSADSTVHLTVMNVSARLGQFRTAMRLFRDVRTASSSTMTLLLE
VGWVRLSDTLCPFDRLATSSNGIHTFAGVMSNCLPIGSAGRKNWQSVEVV
LREALSSCRDQRLVIGCES
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mRNA from alignment at H-paniculata_contig21520:4..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21520.5673.1 ID=mRNA_H-paniculata_contig21520.5673.1|Name=mRNA_H-paniculata_contig21520.5673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=508bp|location=Sequence derived from alignment at H-paniculata_contig21520:4..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAGCTAAGTCGCCGAAAGGGCTGTACGGTGGCACCGCGGTTAGAGT
CGGGTATTCGGAGGGACCGGCACAGCTTCTCGAGTTGGTACGCTCTTCCC
TATTGCTGCGATTTTCGTCTACTTCAACATCTCATGTTGCGATCGCTGCT
AACCACGGCGGTTGTCGTCAATCTGCTGATAGCACCGTGCACTTGACGGT
GATGAATGTCTCGGCGCGGTTGGGGCAATTCCGGACCGCCATGCGCCTCT
TCCGGGACGTCCGCACGGCTTCATCGAGCACTATGACGCTGTTGCTTGAG
GTTGGATGGGTTCGTCTCTCCGACACCCTGTGTCCGTTTGACCGGTTAGC
TACATCTTCAAACGGTATTCACACATTCGCCGGAGTCATGTCAAATTGTC
TTCCAATCGGCTCTGCCGGGCGCAAAAACTGGCAATCCGTCGAGGTGGTA
TTACGGGAGGCGTTGAGCTCGTGTCGTGACCAGAGACTGGTGATCGGGTG
TGAGTCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21520:4..511+

>mRNA_H-paniculata_contig21520.5673.1 ID=mRNA_H-paniculata_contig21520.5673.1|Name=mRNA_H-paniculata_contig21520.5673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig21520:4..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCAGCTAAGTCGCCGAAAGGGCTGTACGGTGGCACCGCGGTTAGAGT
CGGGTATTCGGAGGGACCGGCACAGCTTCTCGAGTTGGTACGCTCTTCCC
TATTGCTGCGATTTTCGTCTACTTCAACATCTCATGTTGCGATCGCTGCT
AACCACGGCGGTTGTCGTCAATCTGCTGATAGCACCGTGCACTTGACGGT
GATGAATGTCTCGGCGCGGTTGGGGCAATTCCGGACCGCCATGCGCCTCT
TCCGGGACGTCCGCACGGCTTCATCGAGCACTATGACGCTGTTGCTTGAG
GTTGGATGGGTTCGTCTCTCCGACACCCTGTGTCCGTTTGACCGGTTAGC
TACATCTTCAAACGGTATTCACACATTCGCCGGAGTCATGTCAAATTGTC
TTCCAATCGGCTCTGCCGGGCGCAAAAACTGGCAATCCGTCGAGGTGGTA
TTACGGGAGGCGTTGAGCTCGTGTCGTGACCAGAGACTGGTGATCGGGTG
TGAGTCGGGTGCAGCTAAGTCGCCGAAAGGGCTGTACGGTGGCACCGCGG
TTAGAGTCGGGTATTCGGAGGGACCGGCACAGCTTCTCGAGTTGGTACGC
TCTTCCCTATTGCTGCGATTTTCGTCTACTTCAACATCTCATGTTGCGAT
CGCTGCTAACCACGGCGGTTGTCGTCAATCTGCTGATAGCACCGTGCACT
TGACGGTGATGAATGTCTCGGCGCGGTTGGGGCAATTCCGGACCGCCATG
CGCCTCTTCCGGGACGTCCGCACGGCTTCATCGAGCACTATGACGCTGTT
GCTTGAGGTTGGATGGGTTCGTCTCTCCGACACCCTGTGTCCGTTTGACC
GGTTAGCTACATCTTCAAACGGTATTCACACATTCGCCGGAGTCATGTCA
AATTGTCTTCCAATCGGCTCTGCCGGGCGCAAAAACTGGCAATCCGTCGA
GGTGGTATTACGGGAGGCGTTGAGCTCGTGTCGTGACCAGAGACTGGTGA
TCGGGTGTGAGTCG
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