mRNA_H-paniculata_contig2152.5671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2152.5671.1
Unique NamemRNA_H-paniculata_contig2152.5671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2152.5671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2152contigH-paniculata_contig2152:3952..4612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size661
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2152.5671.1prot_H-paniculata_contig2152.5671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2152 3976..4335 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.3044538-UTR-H-paniculata_contig2152:3951..39751622929581.3044538-UTR-H-paniculata_contig2152:3951..3975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2152 3952..3975 +
1691480922.9825592-UTR-H-paniculata_contig2152:3951..39751691480922.9825592-UTR-H-paniculata_contig2152:3951..3975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2152 3952..3975 +
1622929581.448144-UTR-H-paniculata_contig2152:4335..46121622929581.448144-UTR-H-paniculata_contig2152:4335..4612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2152 4336..4612 +
1691480922.9980881-UTR-H-paniculata_contig2152:4335..46121691480922.9980881-UTR-H-paniculata_contig2152:4335..4612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2152 4336..4612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.326027-CDS-H-paniculata_contig2152:3975..43351622929581.326027-CDS-H-paniculata_contig2152:3975..4335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 3976..4335 +
1691480922.9906988-CDS-H-paniculata_contig2152:3975..43351691480922.9906988-CDS-H-paniculata_contig2152:3975..4335Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 3976..4335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2152.5671.1

>prot_H-paniculata_contig2152.5671.1 ID=prot_H-paniculata_contig2152.5671.1|Name=mRNA_H-paniculata_contig2152.5671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MTQQTNRWKSSYSPNKTFWLGKTCPDKLPQSLRTIEERQNDHNETSSLNC
QNSVLSSRHISKSKILETSNDDTRLRHTPSHMLIPQTQCHTCQANPRYSS
ISTPLNHGPRQLNSIYNLS*
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mRNA from alignment at H-paniculata_contig2152:3952..4612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2152.5671.1 ID=mRNA_H-paniculata_contig2152.5671.1|Name=mRNA_H-paniculata_contig2152.5671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=661bp|location=Sequence derived from alignment at H-paniculata_contig2152:3952..4612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAGTGTACATTATTAGGGTGCATGACACAGCAAACAAATAGATGGAA
GAGTTCGTACAGTCCTAACAAAACGTTTTGGCTGGGGAAAACATGTCCAG
ACAAACTGCCGCAGAGTCTTCGCACCATCGAGGAACGCCAAAATGATCAT
AACGAAACATCCAGCCTCAACTGTCAAAACTCGGTTCTTAGTTCTCGACA
TATTTCCAAATCTAAGATATTGGAAACATCAAACGATGATACTCGACTAC
GACACACACCTTCACACATGCTTATACCACAAACTCAGTGCCATACATGT
CAGGCAAACCCCAGATACAGCAGCATATCAACGCCACTAAATCATGGCCC
CCGTCAACTCAACTCAATTTACAACCTCTCTTGAATGCTGGATAAGCCTT
CATCACCTTTGATATCACCCAAGGTGAACCACACAGGGTAATATATAGCC
CCCACTACCTGCCATGCACCCGCAACAATAGGCTCTAAAAATAGAACGTA
GCTTAAATTCCCCGCGAGGCAATGCCTACTGGTCAAAGCCGCTGACTGCC
GAAGGTACATAATCGGAGAGAGCGTTTGTGGTATATAGCGGTAACACGCA
GTCAAGTCACAGCTTTTGCAAAATGAAATGTATGAGCCCCTAACAACATA
ATAAGCCCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2152:3952..4612+

>mRNA_H-paniculata_contig2152.5671.1 ID=mRNA_H-paniculata_contig2152.5671.1|Name=mRNA_H-paniculata_contig2152.5671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig2152:3952..4612+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACAGCAAACAAATAGATGGAAGAGTTCGTACAGTCCTAACAAAAC
GTTTTGGCTGGGGAAAACATGTCCAGACAAACTGCCGCAGAGTCTTCGCA
CCATCGAGGAACGCCAAAATGATCATAACGAAACATCCAGCCTCAACTGT
CAAAACTCGGTTCTTAGTTCTCGACATATTTCCAAATCTAAGATATTGGA
AACATCAAACGATGATACTCGACTACGACACACACCTTCACACATGCTTA
TACCACAAACTCAGTGCCATACATGTCAGGCAAACCCCAGATACAGCAGC
ATATCAACGCCACTAAATCATGGCCCCCGTCAACTCAACTCAATTTACAA
CCTCTCTTGAATGACACAGCAAACAAATAGATGGAAGAGTTCGTACAGTC
CTAACAAAACGTTTTGGCTGGGGAAAACATGTCCAGACAAACTGCCGCAG
AGTCTTCGCACCATCGAGGAACGCCAAAATGATCATAACGAAACATCCAG
CCTCAACTGTCAAAACTCGGTTCTTAGTTCTCGACATATTTCCAAATCTA
AGATATTGGAAACATCAAACGATGATACTCGACTACGACACACACCTTCA
CACATGCTTATACCACAAACTCAGTGCCATACATGTCAGGCAAACCCCAG
ATACAGCAGCATATCAACGCCACTAAATCATGGCCCCCGTCAACTCAACT
CAATTTACAACCTCTCTTGA
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