mRNA_H-paniculata_contig21517.5669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21517.5669.1
Unique NamemRNA_H-paniculata_contig21517.5669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21517.5669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21517contigH-paniculata_contig21517:123..3230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size3108
Cds size2199
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21517.5669.1prot_H-paniculata_contig21517.5669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21517 428..2626 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.2233121-UTR-H-paniculata_contig21517:122..4271622929581.2233121-UTR-H-paniculata_contig21517:122..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21517 123..427 +
1691480922.9596953-UTR-H-paniculata_contig21517:122..4271691480922.9596953-UTR-H-paniculata_contig21517:122..427Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21517 123..427 +
1622929581.2566702-UTR-H-paniculata_contig21517:2626..32301622929581.2566702-UTR-H-paniculata_contig21517:2626..3230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21517 2627..3230 +
1691480922.9749305-UTR-H-paniculata_contig21517:2626..32301691480922.9749305-UTR-H-paniculata_contig21517:2626..3230Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21517 2627..3230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.2364426-CDS-H-paniculata_contig21517:427..26261622929581.2364426-CDS-H-paniculata_contig21517:427..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21517 428..2626 +
1691480922.9676228-CDS-H-paniculata_contig21517:427..26261691480922.9676228-CDS-H-paniculata_contig21517:427..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21517 428..2626 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21517.5669.1

>prot_H-paniculata_contig21517.5669.1 ID=prot_H-paniculata_contig21517.5669.1|Name=mRNA_H-paniculata_contig21517.5669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=733bp
MKSAASAVTIPKPKTVGAAGAITNTKPSIKHGETPPETATSGNVGAPSPT
ECSEDSREGLVAEKVDGAVVESFAIDDEGQTLGEGVKSSGPPEGTSLGGE
SCSFGYSRTEKGASADSTGRAESARNDVREVEAQDTGDEGAAEGMAEGFD
TGDHLEEEHRGGVATGADGGDDVGRREEGEEQARHAIEEHETEEEALISP
NVPGSVARDEVDRNVLDAVGHEGAEAAIDGTAPGVNNANTERYQDGGDDA
EASMADVTEVVREGMAKEQVDEESTVKATFAEATGVAGESQAADDVPVDD
GAHGIAEADPVEQSDGRNDCKSAVASTVVAAGTADTAGAVSPGTPVDVVA
VSQSLTESLSAREYADHDAAEGQRPPEVEAHGVDDNCARDRESSGTEVVG
EQQSQGEGGVPGPSRDRLGEVGTRHMAAIDSDCDNIDSAHDVGIKVEADS
SIIPRKDPAKGLHTEESLADFDPGNRDTSDFFAGGCSSDENQTGPPESTS
SVVPGGSGAKSSSGVGLGDVDDDDIDNTALKGSSNLDENDESAGGVDREL
YDPPSPRLISSTFNSPGLIGRGTYPSTTGGAIGAGFVHSRSPAVEAARKM
AGTELSDAAKAAVAAALANAAAGGGGGDLLPSYSRRRKDDYDRGEVGRSS
EGRSKKKKKSKYKDEKWRRKGSGDAEAMHAAEEWGDESRNRGGGRNGLGA
GSGEVPGEKYDDGSNGRDGKSSSKRRHRKTGV*
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mRNA from alignment at H-paniculata_contig21517:123..3230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21517.5669.1 ID=mRNA_H-paniculata_contig21517.5669.1|Name=mRNA_H-paniculata_contig21517.5669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3108bp|location=Sequence derived from alignment at H-paniculata_contig21517:123..3230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATATGCCACTTTTTTTTGCATAATTTGGATTTTTGCAAATGGCGAAAA
GTCCGTCTTGCCTCGTGGACGCTCCAAAATTTGTTTCAAAATTCTGGCTT
AAAATGTGCATTTGAGACTTTTGGGGTTTTATAGCGAACTATTGTTCTGA
ATTTTCGGTCATTTTTTAAAGAGGGGAAATGTTATTTTCAAAATTATTTC
CGGCATTCCTCCTTCTCTTCTTGTTGCCCCCTACTCCCTCCTTACTGTTG
CTTCCTTTCCGCTGGCTATTTGCCGCAGCCCGCCGGTACCACGGCCGGAC
CGACCATGAAGTCTGCGGCATCCGCCGTGACCATTCCCAAACCCAAAACG
GTCGGCGCTGCCGGTGCTATTACCAACACCAAACCCTCCATCAAACATGG
TGAAACGCCGCCCGAAACGGCGACATCCGGAAACGTGGGCGCCCCCTCGC
CGACGGAGTGCAGTGAAGATTCTCGCGAAGGGTTGGTTGCGGAGAAAGTG
GATGGAGCCGTCGTCGAGTCGTTCGCGATTGACGATGAAGGGCAAACCCT
TGGCGAAGGTGTCAAAAGCAGCGGACCGCCCGAAGGTACTAGCCTCGGTG
GGGAATCCTGTTCATTTGGTTACAGTCGAACTGAGAAGGGTGCGTCTGCT
GACTCCACCGGTCGTGCGGAAAGCGCGAGAAATGATGTCCGTGAAGTCGA
AGCTCAAGACACTGGGGATGAAGGGGCCGCAGAGGGTATGGCTGAAGGTT
TCGATACGGGTGATCACTTGGAGGAGGAGCACCGTGGGGGAGTGGCGACA
GGTGCCGATGGTGGTGATGACGTCGGAAGGCGAGAAGAAGGGGAAGAGCA
AGCGCGTCATGCCATCGAGGAACACGAGACAGAGGAGGAAGCGCTGATAT
CACCAAATGTTCCTGGTTCAGTTGCCCGCGACGAGGTAGATAGAAACGTT
CTGGATGCGGTCGGGCACGAAGGAGCGGAAGCTGCTATTGATGGAACAGC
GCCAGGTGTAAATAACGCAAACACAGAGCGATATCAAGATGGAGGGGACG
ATGCAGAAGCCAGCATGGCAGACGTTACAGAAGTAGTAAGAGAAGGGATG
GCAAAGGAGCAGGTGGATGAGGAATCCACGGTGAAGGCGACGTTTGCTGA
GGCTACTGGAGTTGCTGGGGAATCTCAAGCAGCTGATGACGTGCCCGTCG
ATGATGGCGCGCATGGAATTGCCGAAGCAGACCCTGTTGAACAATCCGAC
GGAAGAAACGACTGCAAATCCGCCGTTGCAAGTACCGTCGTTGCTGCCGG
CACTGCTGACACAGCGGGCGCGGTGTCACCCGGTACGCCTGTGGACGTTG
TCGCTGTCTCTCAATCATTAACCGAGTCGCTGTCAGCAAGAGAATATGCT
GACCACGATGCAGCAGAAGGACAGCGTCCGCCGGAGGTCGAAGCGCACGG
TGTTGATGACAATTGTGCGAGGGACCGAGAAAGCTCTGGCACTGAGGTTG
TTGGGGAGCAGCAGTCTCAGGGGGAGGGTGGAGTTCCTGGTCCCAGTCGT
GATCGGCTTGGTGAGGTTGGGACGAGACACATGGCCGCAATCGACAGCGA
CTGTGATAATATCGACAGTGCTCACGATGTCGGCATCAAGGTGGAAGCCG
ATTCCTCGATCATTCCGCGGAAAGATCCTGCGAAAGGTTTACATACGGAG
GAATCTCTGGCGGACTTCGACCCCGGTAACAGGGACACCAGTGATTTCTT
CGCAGGGGGTTGCAGCAGCGATGAGAACCAGACTGGTCCTCCAGAGAGCA
CCTCAAGCGTCGTTCCAGGGGGGAGTGGGGCTAAATCGTCTTCTGGGGTG
GGCTTGGGAGATGTCGATGACGACGATATTGACAACACCGCTCTAAAGGG
ATCTTCGAACCTTGACGAAAATGATGAGAGTGCCGGTGGTGTTGATCGTG
AACTATACGATCCGCCGTCACCGCGACTGATTTCGTCGACCTTTAATTCT
CCAGGCCTGATCGGCCGAGGCACTTACCCCTCGACGACAGGAGGGGCAAT
AGGTGCGGGGTTTGTGCATTCGCGATCTCCTGCCGTCGAAGCGGCGCGGA
AAATGGCGGGGACGGAACTGAGTGATGCGGCGAAGGCGGCTGTAGCGGCT
GCTCTTGCTAATGCCGCTGCAGGCGGGGGAGGGGGTGATTTGTTGCCGTC
ATATTCTCGCCGCAGGAAGGATGACTATGACCGGGGCGAAGTAGGCAGAA
GTAGCGAGGGGAGATCGAAAAAGAAAAAAAAGAGTAAGTACAAGGATGAG
AAATGGCGACGAAAGGGCAGCGGCGATGCGGAAGCAATGCATGCTGCAGA
GGAATGGGGAGATGAGTCTAGGAATAGGGGTGGTGGGAGAAATGGATTGG
GGGCGGGATCGGGCGAGGTTCCTGGTGAGAAATATGATGATGGAAGTAAT
GGGAGAGACGGAAAATCTTCGTCCAAACGACGGCACCGAAAGACTGGAGT
ATGACACCCGTTTTGATTGATTGTGATGTTGTGTCTCGAGATATTTAGTT
GCTTGAGGGAATTTTTTGGTTGGGTGGACGGACACCTGTCTACCTATCGA
GGTGGATCAGTCTTCGATGGTAAACGTTTCTATTGAGTGATGGTTGTCTT
TGCGGTGGTTTTTGTCTGTTGTGTCGTGTCTTCTTATTGCCCTCCCTTGT
GGGCCATTATGCGGAGCGAATTTTTAGTGGGTCGCAGACGATCGAAGGTT
TGACCACCTTACTGGTTGCCTGAGGTAAGAGAAGTCTTGTCCTCGACCCG
AAGTATGCTTCAACAAGAGCTCTTCACTCATAGAGATCAGGCCAGGTCTT
GTGATGGCAGTTGGTTTGCGTAGTATGTTTGGGTTTGTGCGAAGCAGATC
CACGATCAATAGCTGGGGTCAGTCATGGCTCTCTGAATAAATAGTACAGG
TATGTGGAGCTCGGGATAGTAACTGGTAAAAACCCATGAATACCAGTCGC
GATGACTCGGCGTTGCTATCCCGCTTATTTTCTGTTCGTTTTTTTCAAAT
AACGAGTTAAACAATTTCCTTCACTGGGTTTTGAAGTCTGCCGATGATAT
ATGATGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig21517:123..3230+

>mRNA_H-paniculata_contig21517.5669.1 ID=mRNA_H-paniculata_contig21517.5669.1|Name=mRNA_H-paniculata_contig21517.5669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4398bp|location=Sequence derived from alignment at H-paniculata_contig21517:123..3230+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCTGCGGCATCCGCCGTGACCATTCCCAAACCCAAAACGGTCGG
CGCTGCCGGTGCTATTACCAACACCAAACCCTCCATCAAACATGGTGAAA
CGCCGCCCGAAACGGCGACATCCGGAAACGTGGGCGCCCCCTCGCCGACG
GAGTGCAGTGAAGATTCTCGCGAAGGGTTGGTTGCGGAGAAAGTGGATGG
AGCCGTCGTCGAGTCGTTCGCGATTGACGATGAAGGGCAAACCCTTGGCG
AAGGTGTCAAAAGCAGCGGACCGCCCGAAGGTACTAGCCTCGGTGGGGAA
TCCTGTTCATTTGGTTACAGTCGAACTGAGAAGGGTGCGTCTGCTGACTC
CACCGGTCGTGCGGAAAGCGCGAGAAATGATGTCCGTGAAGTCGAAGCTC
AAGACACTGGGGATGAAGGGGCCGCAGAGGGTATGGCTGAAGGTTTCGAT
ACGGGTGATCACTTGGAGGAGGAGCACCGTGGGGGAGTGGCGACAGGTGC
CGATGGTGGTGATGACGTCGGAAGGCGAGAAGAAGGGGAAGAGCAAGCGC
GTCATGCCATCGAGGAACACGAGACAGAGGAGGAAGCGCTGATATCACCA
AATGTTCCTGGTTCAGTTGCCCGCGACGAGGTAGATAGAAACGTTCTGGA
TGCGGTCGGGCACGAAGGAGCGGAAGCTGCTATTGATGGAACAGCGCCAG
GTGTAAATAACGCAAACACAGAGCGATATCAAGATGGAGGGGACGATGCA
GAAGCCAGCATGGCAGACGTTACAGAAGTAGTAAGAGAAGGGATGGCAAA
GGAGCAGGTGGATGAGGAATCCACGGTGAAGGCGACGTTTGCTGAGGCTA
CTGGAGTTGCTGGGGAATCTCAAGCAGCTGATGACGTGCCCGTCGATGAT
GGCGCGCATGGAATTGCCGAAGCAGACCCTGTTGAACAATCCGACGGAAG
AAACGACTGCAAATCCGCCGTTGCAAGTACCGTCGTTGCTGCCGGCACTG
CTGACACAGCGGGCGCGGTGTCACCCGGTACGCCTGTGGACGTTGTCGCT
GTCTCTCAATCATTAACCGAGTCGCTGTCAGCAAGAGAATATGCTGACCA
CGATGCAGCAGAAGGACAGCGTCCGCCGGAGGTCGAAGCGCACGGTGTTG
ATGACAATTGTGCGAGGGACCGAGAAAGCTCTGGCACTGAGGTTGTTGGG
GAGCAGCAGTCTCAGGGGGAGGGTGGAGTTCCTGGTCCCAGTCGTGATCG
GCTTGGTGAGGTTGGGACGAGACACATGGCCGCAATCGACAGCGACTGTG
ATAATATCGACAGTGCTCACGATGTCGGCATCAAGGTGGAAGCCGATTCC
TCGATCATTCCGCGGAAAGATCCTGCGAAAGGTTTACATACGGAGGAATC
TCTGGCGGACTTCGACCCCGGTAACAGGGACACCAGTGATTTCTTCGCAG
GGGGTTGCAGCAGCGATGAGAACCAGACTGGTCCTCCAGAGAGCACCTCA
AGCGTCGTTCCAGGGGGGAGTGGGGCTAAATCGTCTTCTGGGGTGGGCTT
GGGAGATGTCGATGACGACGATATTGACAACACCGCTCTAAAGGGATCTT
CGAACCTTGACGAAAATGATGAGAGTGCCGGTGGTGTTGATCGTGAACTA
TACGATCCGCCGTCACCGCGACTGATTTCGTCGACCTTTAATTCTCCAGG
CCTGATCGGCCGAGGCACTTACCCCTCGACGACAGGAGGGGCAATAGGTG
CGGGGTTTGTGCATTCGCGATCTCCTGCCGTCGAAGCGGCGCGGAAAATG
GCGGGGACGGAACTGAGTGATGCGGCGAAGGCGGCTGTAGCGGCTGCTCT
TGCTAATGCCGCTGCAGGCGGGGGAGGGGGTGATTTGTTGCCGTCATATT
CTCGCCGCAGGAAGGATGACTATGACCGGGGCGAAGTAGGCAGAAGTAGC
GAGGGGAGATCGAAAAAGAAAAAAAAGAGTAAGTACAAGGATGAGAAATG
GCGACGAAAGGGCAGCGGCGATGCGGAAGCAATGCATGCTGCAGAGGAAT
GGGGAGATGAGTCTAGGAATAGGGGTGGTGGGAGAAATGGATTGGGGGCG
GGATCGGGCGAGGTTCCTGGTGAGAAATATGATGATGGAAGTAATGGGAG
AGACGGAAAATCTTCGTCCAAACGACGGCACCGAAAGACTGGAGTATGAA
TGAAGTCTGCGGCATCCGCCGTGACCATTCCCAAACCCAAAACGGTCGGC
GCTGCCGGTGCTATTACCAACACCAAACCCTCCATCAAACATGGTGAAAC
GCCGCCCGAAACGGCGACATCCGGAAACGTGGGCGCCCCCTCGCCGACGG
AGTGCAGTGAAGATTCTCGCGAAGGGTTGGTTGCGGAGAAAGTGGATGGA
GCCGTCGTCGAGTCGTTCGCGATTGACGATGAAGGGCAAACCCTTGGCGA
AGGTGTCAAAAGCAGCGGACCGCCCGAAGGTACTAGCCTCGGTGGGGAAT
CCTGTTCATTTGGTTACAGTCGAACTGAGAAGGGTGCGTCTGCTGACTCC
ACCGGTCGTGCGGAAAGCGCGAGAAATGATGTCCGTGAAGTCGAAGCTCA
AGACACTGGGGATGAAGGGGCCGCAGAGGGTATGGCTGAAGGTTTCGATA
CGGGTGATCACTTGGAGGAGGAGCACCGTGGGGGAGTGGCGACAGGTGCC
GATGGTGGTGATGACGTCGGAAGGCGAGAAGAAGGGGAAGAGCAAGCGCG
TCATGCCATCGAGGAACACGAGACAGAGGAGGAAGCGCTGATATCACCAA
ATGTTCCTGGTTCAGTTGCCCGCGACGAGGTAGATAGAAACGTTCTGGAT
GCGGTCGGGCACGAAGGAGCGGAAGCTGCTATTGATGGAACAGCGCCAGG
TGTAAATAACGCAAACACAGAGCGATATCAAGATGGAGGGGACGATGCAG
AAGCCAGCATGGCAGACGTTACAGAAGTAGTAAGAGAAGGGATGGCAAAG
GAGCAGGTGGATGAGGAATCCACGGTGAAGGCGACGTTTGCTGAGGCTAC
TGGAGTTGCTGGGGAATCTCAAGCAGCTGATGACGTGCCCGTCGATGATG
GCGCGCATGGAATTGCCGAAGCAGACCCTGTTGAACAATCCGACGGAAGA
AACGACTGCAAATCCGCCGTTGCAAGTACCGTCGTTGCTGCCGGCACTGC
TGACACAGCGGGCGCGGTGTCACCCGGTACGCCTGTGGACGTTGTCGCTG
TCTCTCAATCATTAACCGAGTCGCTGTCAGCAAGAGAATATGCTGACCAC
GATGCAGCAGAAGGACAGCGTCCGCCGGAGGTCGAAGCGCACGGTGTTGA
TGACAATTGTGCGAGGGACCGAGAAAGCTCTGGCACTGAGGTTGTTGGGG
AGCAGCAGTCTCAGGGGGAGGGTGGAGTTCCTGGTCCCAGTCGTGATCGG
CTTGGTGAGGTTGGGACGAGACACATGGCCGCAATCGACAGCGACTGTGA
TAATATCGACAGTGCTCACGATGTCGGCATCAAGGTGGAAGCCGATTCCT
CGATCATTCCGCGGAAAGATCCTGCGAAAGGTTTACATACGGAGGAATCT
CTGGCGGACTTCGACCCCGGTAACAGGGACACCAGTGATTTCTTCGCAGG
GGGTTGCAGCAGCGATGAGAACCAGACTGGTCCTCCAGAGAGCACCTCAA
GCGTCGTTCCAGGGGGGAGTGGGGCTAAATCGTCTTCTGGGGTGGGCTTG
GGAGATGTCGATGACGACGATATTGACAACACCGCTCTAAAGGGATCTTC
GAACCTTGACGAAAATGATGAGAGTGCCGGTGGTGTTGATCGTGAACTAT
ACGATCCGCCGTCACCGCGACTGATTTCGTCGACCTTTAATTCTCCAGGC
CTGATCGGCCGAGGCACTTACCCCTCGACGACAGGAGGGGCAATAGGTGC
GGGGTTTGTGCATTCGCGATCTCCTGCCGTCGAAGCGGCGCGGAAAATGG
CGGGGACGGAACTGAGTGATGCGGCGAAGGCGGCTGTAGCGGCTGCTCTT
GCTAATGCCGCTGCAGGCGGGGGAGGGGGTGATTTGTTGCCGTCATATTC
TCGCCGCAGGAAGGATGACTATGACCGGGGCGAAGTAGGCAGAAGTAGCG
AGGGGAGATCGAAAAAGAAAAAAAAGAGTAAGTACAAGGATGAGAAATGG
CGACGAAAGGGCAGCGGCGATGCGGAAGCAATGCATGCTGCAGAGGAATG
GGGAGATGAGTCTAGGAATAGGGGTGGTGGGAGAAATGGATTGGGGGCGG
GATCGGGCGAGGTTCCTGGTGAGAAATATGATGATGGAAGTAATGGGAGA
GACGGAAAATCTTCGTCCAAACGACGGCACCGAAAGACTGGAGTATGA
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