mRNA_H-paniculata_contig21508.5667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21508.5667.1
Unique NamemRNA_H-paniculata_contig21508.5667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.970e-17
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:   14 WSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            +SK LESVRKDVE FFG++KGRFRILKL + Y E+ER+    F CCILHNMLH
Sbjct:   15 FSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCCILHNMLH 67
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BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5KML5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML5_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.840e-17
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 2 
Query:    5 ETRWSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            E++WSK LESVRKDVEYFFG++KGRFRILKL IL++ +  +    F CC LH+MLH
Sbjct:    7 ESKWSKALESVRKDVEYFFGILKGRFRILKLGILFQHENVIDNLFFTCCTLHSMLH 62
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BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5L8U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.040e-16
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:   14 WSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            +SK LESVRKDVE FFG++KGRFRILKL + Y E+ER+    F CCILHNMLH
Sbjct:   15 FSKRLESVRKDVECFFGILKGRFRILKLAMAYPEQERIDNVFFTCCILHNMLH 67
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.120e-16
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 2 
Query:    2 EETRWSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            E+T +S+TLESVRKDVE FFG++KGRFRILKL + YR KE +      CCILHNMLH
Sbjct:   16 EDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLH 72
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 9.120e-16
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 2 
Query:   20 KTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            K LESVRKDVE FFG++KGRFRILKL + Y+ +ER+    F CCILHNMLH
Sbjct:   38 KRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLH 88
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.170e-16
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 2 
Query:   14 WSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            +SK LESVRKDVE FFG+VKGRFRILKL I Y ++E +    F CCILHNMLH
Sbjct:   67 FSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLH 119
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.540e-15
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2 
Query:    2 EETRWSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            E+T +S+TLESVRKDVE FF ++KGRFRILKL + YR KE +      CCILHNMLH
Sbjct:   26 EDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLH 82
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-15
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 2 
Query:   14 WSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            +SK LESVRKDVE FFG++KGRFRILKL + Y+ +ER+    F CCILHNMLH
Sbjct:  200 FSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLH 252
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.370e-15
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 2 
Query:   14 WSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            +SK LESVRKDVE FFG++K RFRILKL + Y+++ER+ Y  F CCILHNMLH
Sbjct:  324 FSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLH 376
[Close]
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.530e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:    2 EETRWSKTLESVRKDVEYFFGVVKGRFRILKLPILYREKERMGYALFACCILHNMLH 172
            E+T +S+TLESVRKDVE FFG++KGRFRILKL + YR K+ +    + CCILHNMLH
Sbjct:  347 EDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLH 403
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21508.5667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXJ4_9PHAE1.970e-1769.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML5_9PHAE5.840e-1764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8U1_9PHAE1.040e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE4.120e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE9.120e-1668.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R0_9PHAE9.170e-1669.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE1.540e-1564.91Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE2.300e-1567.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE2.370e-1567.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE2.530e-1564.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21508contigH-paniculata_contig21508:1186..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size461
Cds size330
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.0417233-UTR-H-paniculata_contig21508:1185..13161622929581.0417233-UTR-H-paniculata_contig21508:1185..1316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21508 1186..1316 +
1691480922.9033508-UTR-H-paniculata_contig21508:1185..13161691480922.9033508-UTR-H-paniculata_contig21508:1185..1316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21508 1186..1316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.0694268-CDS-H-paniculata_contig21508:1316..16461622929581.0694268-CDS-H-paniculata_contig21508:1316..1646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21508 1317..1646 +
1691480922.9189672-CDS-H-paniculata_contig21508:1316..16461691480922.9189672-CDS-H-paniculata_contig21508:1316..1646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21508 1317..1646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21508.5667.1prot_H-paniculata_contig21508.5667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21508 1317..1646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21508.5667.1

>prot_H-paniculata_contig21508.5667.1 ID=prot_H-paniculata_contig21508.5667.1|Name=mRNA_H-paniculata_contig21508.5667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MPCSRAASSITCSTVSSSERVACAAATGDPPVPSCSEHLSLAPDGTDLAW
FGGFPPLFPVVCVFSLSPPADTGVCAAFPSYCVVTFLRTGVMSLLSFVLL
FFFALPFVV*
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mRNA from alignment at H-paniculata_contig21508:1186..1646+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21508.5667.1 ID=mRNA_H-paniculata_contig21508.5667.1|Name=mRNA_H-paniculata_contig21508.5667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=461bp|location=Sequence derived from alignment at H-paniculata_contig21508:1186..1646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGAGGAGACACGGTGGAGCAAGACGTTGGAGAGCGTACGAAAGGATGTGG
AGTATTTCTTCGGCGTCGTGAAGGGCAGGTTCAGAATCCTCAAGCTTCCC
ATCCTCTATCGCGAAAAAGAAAGAATGGGCTATGCCTTGTTCGCGTGCTG
CATCCTCCATAACATGCTCCACGGTGTCATCATCAGAAAGGGTAGCCTGT
GCAGCGGCAACAGGCGATCCTCCCGTCCCCTCGTGTTCTGAACACCTCTC
GCTTGCTCCTGATGGCACCGACCTCGCGTGGTTCGGCGGATTTCCTCCCC
TCTTCCCTGTTGTCTGTGTGTTCTCACTGTCCCCTCCTGCCGACACCGGT
GTATGTGCCGCGTTCCCGTCGTATTGTGTCGTGACGTTCCTCCGAACCGG
AGTCATGTCCTTGTTGTCATTTGTACTCTTGTTCTTCTTCGCCCTACCCT
TTGTGGTCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21508:1186..1646+

>mRNA_H-paniculata_contig21508.5667.1 ID=mRNA_H-paniculata_contig21508.5667.1|Name=mRNA_H-paniculata_contig21508.5667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig21508:1186..1646+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTGTTCGCGTGCTGCATCCTCCATAACATGCTCCACGGTGTCATC
ATCAGAAAGGGTAGCCTGTGCAGCGGCAACAGGCGATCCTCCCGTCCCCT
CGTGTTCTGAACACCTCTCGCTTGCTCCTGATGGCACCGACCTCGCGTGG
TTCGGCGGATTTCCTCCCCTCTTCCCTGTTGTCTGTGTGTTCTCACTGTC
CCCTCCTGCCGACACCGGTGTATGTGCCGCGTTCCCGTCGTATTGTGTCG
TGACGTTCCTCCGAACCGGAGTCATGTCCTTGTTGTCATTTGTACTCTTG
TTCTTCTTCGCCCTACCCTTTGTGGTCTGAATGCCTTGTTCGCGTGCTGC
ATCCTCCATAACATGCTCCACGGTGTCATCATCAGAAAGGGTAGCCTGTG
CAGCGGCAACAGGCGATCCTCCCGTCCCCTCGTGTTCTGAACACCTCTCG
CTTGCTCCTGATGGCACCGACCTCGCGTGGTTCGGCGGATTTCCTCCCCT
CTTCCCTGTTGTCTGTGTGTTCTCACTGTCCCCTCCTGCCGACACCGGTG
TATGTGCCGCGTTCCCGTCGTATTGTGTCGTGACGTTCCTCCGAACCGGA
GTCATGTCCTTGTTGTCATTTGTACTCTTGTTCTTCTTCGCCCTACCCTT
TGTGGTCTGA
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