mRNA_H-paniculata_contig215.5665.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig215.5665.1
Unique NamemRNA_H-paniculata_contig215.5665.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: D7G068_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G068_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 1.190e-38
Identity = 55/80 (68.75%), Postives = 64/80 (80.00%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSLP 240
            MGGGRHFH+PKHVWSP+GGWW NP +WK NT  A + IG A   + +IS++RERRPI P  HI SQ+WCKHAKEDDPSLP
Sbjct:    1 MGGGRHFHFPKHVWSPAGGWWVNPPHWKRNTGFAFVGIGLAFIAIARISSDRERRPIAPAFHIPSQRWCKHAKEDDPSLP 80
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: UPI001CF0F221 (uncharacterized protein LOC114956067 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF0F221)

HSP 1 Score: 117 bits (292), Expect = 1.410e-32
Identity = 53/80 (66.25%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSLP 240
            MGG + F YPK+VWSP+GGWWCNP NWK NTAIA   I   C  V  IS   ERR +PP RHI SQ++CKHAKEDDPSLP
Sbjct:    1 MGGVKKFDYPKYVWSPAGGWWCNPRNWKRNTAIAFGVIFAMCIPVHYISWSLERRYVPPYRHIPSQRFCKHAKEDDPSLP 80
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A1Z5JPC4_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JPC4_FISSO)

HSP 1 Score: 114 bits (284), Expect = 1.760e-31
Identity = 50/79 (63.29%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            MGGG  ++ PK VWSP+GGWW NP NWK NT IA   +G    G+FQ+S+ RERRPIPP  HI SQ WCKHA EDDP L
Sbjct:    1 MGGGGWYYVPK-VWSPAGGWWNNPANWKRNTGIAGAVVGILAVGLFQVSSSRERRPIPPPWHIPSQYWCKHAVEDDPRL 78
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A6S7H709_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H709_PARCT)

HSP 1 Score: 112 bits (280), Expect = 7.160e-31
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            MGGG+ F YPK+VWSPSGGWWC P NW+ NTAI    I  AC  +  +S + ERRP+ P RHI SQ++ KHAKEDDPSL
Sbjct:    1 MGGGKRFDYPKYVWSPSGGWWCEPRNWRRNTAIGFGMIFAACVPICWLSWQLERRPVAPYRHIFSQRFAKHAKEDDPSL 79
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A369RVU1_9METZ (Uncharacterized protein n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RVU1_9METZ)

HSP 1 Score: 112 bits (280), Expect = 9.260e-31
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 1 
Query:    4 GGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSLP 240
            GGG+ F YP++VWSP+GGWWCNP NWK NTA+A + +   C   F +SA RER    P RH++SQK+ +HAKEDDPSLP
Sbjct:    3 GGGKRFPYPQYVWSPAGGWWCNPRNWKRNTALATVAVIGICIPAFCLSASRERMVQQPYRHVLSQKFARHAKEDDPSLP 81
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A1X7UGN9_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UGN9_AMPQE)

HSP 1 Score: 110 bits (276), Expect = 3.090e-30
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    4 GGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            GG + F YPK+VWSPSGGWWCNP +W+ NT I  + +  +C  V  ISA+ ERRP+ P RHI SQ+WCK+A+ DDPSL
Sbjct:    1 GGTKEFPYPKYVWSPSGGWWCNPRHWRRNTNIGLLIVVLSCIPVAYISAKLERRPVAPYRHIPSQRWCKYAETDDPSL 78
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: UPI0013901F45 (uncharacterized protein LOC116613693 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901F45)

HSP 1 Score: 110 bits (276), Expect = 8.010e-30
Identity = 49/80 (61.25%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSLP 240
            MGGG+ F YPK VWSPSGGWWCNP NW+ NT IA       C  V  I+ + ERRP+PP RHI SQ+  K+AK DDPSLP
Sbjct:   26 MGGGKKFAYPKFVWSPSGGWWCNPKNWRRNTLIAFGVYAAICIPVAYIALQLERRPVPPYRHIPSQRLAKYAKVDDPSLP 105
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BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A4D9DFY8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFY8_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.150e-29
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            MGGGR F++P H+W+PSGGW+ NP NW+ NT +    IG A F  F +SA  ERRPI P  HI SQ WCKHA EDD SL
Sbjct:    1 MGGGRWFYFPTHIWTPSGGWFPNPKNWRANTLLVLGGIGVAAFSTFSLSASLERRPIAPAWHIPSQSWCKHAAEDDKSL 79
[Close]
BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A196SL48_BLAHN (Uncharacterized protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SL48_BLAHN)

HSP 1 Score: 109 bits (272), Expect = 1.190e-29
Identity = 49/79 (62.03%), Postives = 54/79 (68.35%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            M GG  F YPK+VWSP+GGWW    NW+ NT IAA+ +      VF  SA  ERRPIPP RHI SQ WCKHAKEDDP L
Sbjct:    1 MSGGTPFRYPKYVWSPAGGWWGQNANWRRNTRIAAVVMVALSIPVFIASANMERRPIPPVRHIPSQYWCKHAKEDDPRL 79
[Close]
BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Match: A0A7S2BVW4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVW4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 4.590e-29
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:    1 MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISAERERRPIPPTRHIMSQKWCKHAKEDDPSL 237
            +GGG H+HYP HVW+P+GGWW NP NWK N  IA   +GF+ + +  +S + ERRP+PP  +I SQ WCK+A  DDP L
Sbjct:   22 LGGGGHYHYPAHVWTPAGGWWVNPPNWKRNLGIAFGFLGFSLYNISSLSTKLERRPMPPKNYIPSQGWCKNAAADDPDL 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig215.5665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G068_ECTSI1.190e-3868.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF0F2211.410e-3266.25uncharacterized protein LOC114956067 n=1 Tax=Acrop... [more]
A0A1Z5JPC4_FISSO1.760e-3163.29Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6S7H709_PARCT7.160e-3162.03Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A369RVU1_9METZ9.260e-3159.49Uncharacterized protein n=1 Tax=Trichoplax sp. H2 ... [more]
A0A1X7UGN9_AMPQE3.090e-3058.97Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI0013901F458.010e-3061.25uncharacterized protein LOC116613693 n=1 Tax=Nemat... [more]
A0A4D9DFY8_9STRA1.150e-2959.49Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A196SL48_BLAHN1.190e-2962.03Uncharacterized protein n=1 Tax=Blastocystis sp. s... [more]
A0A7S2BVW4_9STRA4.590e-2954.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig215contigH-paniculata_contig215:39285..40777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score114.4
Seed ortholog evalue2.5e-23
Seed eggNOG ortholog400682.PAC_15716111
Hectar predicted targeting categoryother localisation
EggNOG OGs2CGJ1@1,2S6YK@2759,3A92W@33154,3C3J4@33208
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004010.1
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size243
Cds size243
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.913532-CDS-H-paniculata_contig215:39284..394431622929580.913532-CDS-H-paniculata_contig215:39284..39443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 39285..39443 +
1691480922.8685749-CDS-H-paniculata_contig215:39284..394431691480922.8685749-CDS-H-paniculata_contig215:39284..39443Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 39285..39443 +
1622929580.9405704-CDS-H-paniculata_contig215:40693..407771622929580.9405704-CDS-H-paniculata_contig215:40693..40777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 40694..40777 +
1691480922.879262-CDS-H-paniculata_contig215:40693..407771691480922.879262-CDS-H-paniculata_contig215:40693..40777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 40694..40777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig215.5665.1prot_H-paniculata_contig215.5665.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig215 39285..40777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig215.5665.1

>prot_H-paniculata_contig215.5665.1 ID=prot_H-paniculata_contig215.5665.1|Name=mRNA_H-paniculata_contig215.5665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MGGGRHFHYPKHVWSPSGGWWCNPVNWKMNTAIAAMTIGFACFGVFQISA
ERERRPIPPTRHIMSQKWCKHAKEDDPSLP*
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mRNA from alignment at H-paniculata_contig215:39285..40777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig215.5665.1 ID=mRNA_H-paniculata_contig215.5665.1|Name=mRNA_H-paniculata_contig215.5665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1493bp|location=Sequence derived from alignment at H-paniculata_contig215:39285..40777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGCGGGAGGCACTTCCACTACCCTAAGCACGTATGGTCGCCGTC
TGGAGGCTGGTGGTGCAATCCGGTTAACTGGAAGATGAACACGGCGATAG
CGGCCATGACCATCGGCTTCGCGTGCTTCGGAGTGTTTCAGATATCGGCG
GAAAGAGAGGTGCAGCCCCACGACGCCATCACTCAGCATTTGCTTCTTTG
TTCGCACCTATGGAAAGTACTTGGCTCTTACGGCCAATAGGATTTCTTCT
CGTGAATCTAACTAGTACTTGCCTCCTCTAACCCACTAGAAAAGCTGCAT
TTTCGACGGGTGGAGCTAATGAAGCTTTCATTTTCAAGGCCACGAAACAA
AACACACAATAAAAAGTGCAGACGAATCGTTACTAAACTGCCCTCATGAA
CTAAACACGCCTTCATGAGGCACGCAAGGACGTTTTGGCATATTGTCGGT
TTCACCTCTGGAGAACGCCGCAGCGCTGACTCCGTCGATAGAACAAGCCG
TTCATCGTCAGGAATTGTACTCTTATCAAGCCTTGACGAAGTTATAGTGT
TGATGCCGTAGATTAAAAAACAGGATTTACGAAGGTAGTGTGCCTGAGGA
CTCTCGATTGATATTATCTGCCAAAGGAACAAGACGCGTCACTCAATCTG
TTCTCTCGTGTATTTGTTGAAGCGCTTTTCGCTTTTTGATGGAGCGAGGC
CAAAGGTCGCCTTGGGCATAGTACTTGAGGGGGCGTATTTTGTAGAGGTA
TACCAGCAGTGTAGTGTTGATTGTACTCTTTTTTGGTCTACTGTGCCGTG
TTGAAACATTTATCGTGAGCTAAGGTTCAGGTACTACTACCGCGTCGGAC
CATGGAAGTGTTTTAAATATTCCCTGCTATCCATGATTTTTTGCTGTGTC
CTTCTTTCGTAGGAATTATCACAATGCTCGGTCGGATGCTAGCGTGTCAT
TGGTTTAAGTAAAGTGGTCGGAAAGCGTTCCTTGCGCCAGGTATCAGACT
TCGACGAAATGGGTTCTTTGTCAAGTCTATATTCTTGTTTCATCCTCTGA
TCGACTCCCAAATGTGCCTTTTCATTGAGATAAAATTCAGTGGCAAGTTT
CTGTCGATAAGTAGTTTCTCTACACGGCTAATCCCCTTTTGACTGAACCT
GCTAGGTTTGCATCATATCGCACTCCAAAGTATTGAGCACGTGTAGGGCA
GCGTTCACCCAAGTGCATAAACGCCTATTTTCCTCACGAGGTAAAGAACA
ACGGTCAAAACAAAGCGCGGGGGCGCGTTACCAACAAAGAGTGGTTGGTG
ATCTACGGCAACAAACCTGGTTTTTATTCGCCAGGCACGACTGATATGCT
CTGTTGTGAACCTCTTTCTTGTTTTCCGTGTTTCGCTCTGTATGCACTGT
TCTCTGCAGCGCCGGCCAATCCCCCCTACACGCCACATCATGTCACAAAA
GTGGTGCAAGCACGCGAAGGAAGATGACCCGTCCCTTCCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig215:39285..40777+

>mRNA_H-paniculata_contig215.5665.1 ID=mRNA_H-paniculata_contig215.5665.1|Name=mRNA_H-paniculata_contig215.5665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig215:39285..40777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGGCGGGAGGCACTTCCACTACCCTAAGCACGTATGGTCGCCGTC
TGGAGGCTGGTGGTGCAATCCGGTTAACTGGAAGATGAACACGGCGATAG
CGGCCATGACCATCGGCTTCGCGTGCTTCGGAGTGTTTCAGATATCGGCG
GAAAGAGAGATGGGAGGCGGGAGGCACTTCCACTACCCTAAGCACGTATG
GTCGCCGTCTGGAGGCTGGTGGTGCAATCCGGTTAACTGGAAGATGAACA
CGGCGATAGCGGCCATGACCATCGGCTTCGCGTGCTTCGGAGTGTTTCAG
ATATCGGCGGAAAGAGAGCGCCGGCCAATCCCCCCTACACGCCACATCAT
GTCACAAAAGTGGTGCAAGCACGCGAAGGAAGATGACCCGTCCCTTCCAT
AGCGCCGGCCAATCCCCCCTACACGCCACATCATGTCACAAAAGTGGTGC
AAGCACGCGAAGGAAGATGACCCGTCCCTTCCATAG
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