mRNA_H-paniculata_contig215.5664.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig215.5664.1
Unique NamemRNA_H-paniculata_contig215.5664.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A2D4BD65_PYTIN (ARL2_Bind_BART domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD65_PYTIN)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-13
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            ++F+   G TVDE F   +D  E NY ALFEEH+Y WFV+ LLA + Y+ FY LM+  AR
Sbjct:   17 SDFVESXGSTVDEFFRECRDIAEGNYTALFEEHKYAWFVEHLLACMDYKHFYGLMVNEAR 76
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BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A7S2CD11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD11_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.380e-11
Identity = 28/59 (47.46%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    4 EFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            +FL   G +  E ++  KDA E+NY ALFEEH++HWFV  LLA++ Y+ F+ +M ++AR
Sbjct:   96 QFLEGEGCSSAEFYAQCKDAIEDNYTALFEEHQHHWFVDALLASMSYEHFFEMMTKAAR 154
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BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A3F2RM49_9STRA (Cilia- and flagella-associated protein 36 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM49_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 8.950e-11
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            +EF+   G T++E F   ++  +  Y ALFEEH Y WFV+ LLA + Y+ FY LM+  AR
Sbjct:   66 SEFVESEGSTIEEFFKECREIHDGEYTALFEEHTYAWFVEHLLACMDYKHFYGLMVNEAR 125
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A8K1CG21_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG21_PYTOL)

HSP 1 Score: 61.6 bits (148), Expect = 1.270e-10
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            +EF+     T+++ F   +D  E NY ALFEEH+Y WFV+ LLA + Y+ FY LM+  AR
Sbjct:   66 SEFVESECCTIEDFFRECRDIVEGNYTALFEEHQYSWFVEHLLACMDYKHFYGLMVNEAR 125
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: G4ZHX4_PHYSP (Cilia- and flagella-associated protein 36 n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZHX4_PHYSP)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-10
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            ++F+   G T+DE F   ++  +  Y ALFEEH Y WFV  LLA + Y+ FY LM+  AR
Sbjct:   66 SDFVESEGATIDEFFKECREIHDGQYTALFEEHTYAWFVDHLLACMDYKHFYGLMVNEAR 125
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: K3X8Y9_GLOUD (Cilia- and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8Y9_GLOUD)

HSP 1 Score: 60.8 bits (146), Expect = 2.690e-10
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALF-EEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            ++F+   G T++E F   +D  E NY ALF +EH+Y WFV+ L+A++ Y +FY+LM+  AR
Sbjct:   66 SDFIESEGATIEEFFRECRDIMEGNYTALFSDEHQYKWFVEHLVASMDYNQFYALMVNEAR 126
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A1V9ZS38_9STRA (Cilia- and flagella-associated protein 36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS38_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.700e-10
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQS 174
            T+FLA  G T+ E + A ++  E  Y ALFEEH+Y WF++ LLAA++Y  FY+ M  S
Sbjct:   64 TDFLAAEGSTITEFYDACREISEEKYTALFEEHQYAWFLERLLAAMEYTAFYTWMAMS 121
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: H3HEE7_PHYRM (Cilia- and flagella-associated protein 36 n=6 Tax=Phytophthora TaxID=4783 RepID=H3HEE7_PHYRM)

HSP 1 Score: 59.7 bits (143), Expect = 7.290e-10
Identity = 26/60 (43.33%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    1 TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            +EF+   G T++E F   ++  +  Y ALF+EH Y WFV  LLA + Y+ FY LM+  AR
Sbjct:   66 SEFVESEGATIEEFFKECREIHDGQYTALFDEHTYAWFVDHLLACMDYKHFYGLMVNEAR 125
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A662XM50_9STRA (ARL2_Bind_BART domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XM50_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-9
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   22 GHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            G T++E F   ++  E +Y ALFEEH + WFV  LLA + Y+ FY LM+  AR
Sbjct:    8 GSTIEEFFGECREISEGHYTALFEEHTHAWFVDHLLACMDYKHFYGLMVNEAR 60
[Close]
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Match: A0A662XB57_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XB57_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.920e-9
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   22 GHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQEFYSLMLQSAR 180
            G T++E F   ++  E +Y ALFEEH Y WFV  LLA + Y+ FY LM+  AR
Sbjct:   87 GSTIEEFFGECREISEGHYTALFEEHTYAWFVDHLLACMDYKHFYGLMVNEAR 139
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig215.5664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2D4BD65_PYTIN1.040e-1351.67ARL2_Bind_BART domain-containing protein (Fragment... [more]
A0A7S2CD11_9STRA8.380e-1147.46Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A3F2RM49_9STRA8.950e-1145.00Cilia- and flagella-associated protein 36 n=2 Tax=... [more]
A0A8K1CG21_PYTOL1.270e-1046.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
G4ZHX4_PHYSP1.830e-1045.00Cilia- and flagella-associated protein 36 n=3 Tax=... [more]
K3X8Y9_GLOUD2.690e-1044.26Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
A0A1V9ZS38_9STRA3.700e-1048.28Cilia- and flagella-associated protein 36 n=1 Tax=... [more]
H3HEE7_PHYRM7.290e-1043.33Cilia- and flagella-associated protein 36 n=6 Tax=... [more]
A0A662XM50_9STRA1.870e-947.17ARL2_Bind_BART domain-containing protein n=1 Tax=N... [more]
A0A662XB57_9STRA1.920e-949.06Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig215contigH-paniculata_contig215:13520..14372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.1504
Hectar predicted targeting categoryother localisation
EggNOG free text desc.The ARF-like 2 binding protein BART
EggNOG OGs2C07X@1,2SBZW@2759,3QFQF@4776
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.8396993-CDS-H-paniculata_contig215:13519..136421622929580.8396993-CDS-H-paniculata_contig215:13519..13642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 13520..13642 -
1691480922.8462412-CDS-H-paniculata_contig215:13519..136421691480922.8462412-CDS-H-paniculata_contig215:13519..13642Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 13520..13642 -
1622929580.8602464-CDS-H-paniculata_contig215:14315..143721622929580.8602464-CDS-H-paniculata_contig215:14315..14372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 14316..14372 -
1691480922.8590164-CDS-H-paniculata_contig215:14315..143721691480922.8590164-CDS-H-paniculata_contig215:14315..14372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig215 14316..14372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig215.5664.1prot_H-paniculata_contig215.5664.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig215 13520..14372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig215.5664.1

>prot_H-paniculata_contig215.5664.1 ID=prot_H-paniculata_contig215.5664.1|Name=mRNA_H-paniculata_contig215.5664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
TEFLAEAGHTVDELFSALKDAQENNYCALFEEHRYHWFVQTLLAALQYQE
FYSLMLQSAR
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mRNA from alignment at H-paniculata_contig215:13520..14372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig215.5664.1 ID=mRNA_H-paniculata_contig215.5664.1|Name=mRNA_H-paniculata_contig215.5664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=853bp|location=Sequence derived from alignment at H-paniculata_contig215:13520..14372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAATTTTTGGCGGAAGCAGGGCACACGGTGGATGAACTCTTTTCAGC
CCTGAAGGTGTGCAGCGTCCGTACGTACAGCAACGCCGTGCTTGCTGATG
AGTGATTTACATACGATAAGATTACACCGTATTGCCGCCCCTGAAGTTGT
TCTATCATCAGAGAGTGAATTAAGACACCCTGAAAGGCTGTGACGAGAGG
AACGTGTGCTTAATGTAGTCTCAAGCACCGGGAAACTTTTGTGGAAGCTT
TATTCGGGGCGACTGTAGTAATTAGTAAGCCGACACTCTTTCACTGACCA
CAACGGTGCCTGAATGGAATAGTATGAACTACTTGGTCATGTGTGTAATC
GGTTCCCTCCATCATCTGACTCCCCGATGCGTGAGGGTTGTAGATGTTGA
CTTCCAATGGACCGTTCTACGCGTAATGCTCGTGAACATTTCGTACAGAA
GTACCAAAAACGTGTATAATAACGATGGCGAGCACATCATGTGTCTACTG
CTCGTTGTTCAGAGAATATCGATGTTACCACCTGAGCCGCTCAACGGTGA
ACCACCGAATTCCCAAGTACTGGTTGTTGCCGCGATCTTTTAAAGATCAC
CTGTTCGACACGATGACATTGTTGGCAATCGATCACAATCAATCGCGCGC
CGATCGCGCACCGGTGACTTCGCGTCATGTTCGAAATACTATAGCCACCT
TCCCATGTTGGCTGATGGTGAACACGACAGGATGCACAGGAAAACAATTA
CTGTGCCTTGTTCGAAGAGCATCGGTACCACTGGTTCGTGCAGACCCTAC
TTGCCGCTCTACAGTATCAAGAATTTTACAGCCTCATGCTGCAATCCGCG
AGG
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Coding sequence (CDS) from alignment at H-paniculata_contig215:13520..14372-

>mRNA_H-paniculata_contig215.5664.1 ID=mRNA_H-paniculata_contig215.5664.1|Name=mRNA_H-paniculata_contig215.5664.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig215:13520..14372- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGAATTTTTGGCGGAAGCAGGGCACACGGTGGATGAACTCTTTTCAGC
CCTGAAGACAGAATTTTTGGCGGAAGCAGGGCACACGGTGGATGAACTCT
TTTCAGCCCTGAAGGATGCACAGGAAAACAATTACTGTGCCTTGTTCGAA
GAGCATCGGTACCACTGGTTCGTGCAGACCCTACTTGCCGCTCTACAGTA
TCAAGAATTTTACAGCCTCATGCTGCAATCCGCGAGGGATGCACAGGAAA
ACAATTACTGTGCCTTGTTCGAAGAGCATCGGTACCACTGGTTCGTGCAG
ACCCTACTTGCCGCTCTACAGTATCAAGAATTTTACAGCCTCATGCTGCA
ATCCGCGAGG
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