mRNA_H-paniculata_contig2149.5660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.500e-32 Identity = 76/186 (40.86%), Postives = 105/186 (56.45%), Query Frame = 3
Query: 3 ESGWGRML---QSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLK------IFFMSGLNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
+SGW + L + TD +R++ FR FR+PYPF V +++V++R FP G + V VELK+LA LQIL +GN F D +S +S T S F RF ++ +G + L M+ YD +GF G VGS+DVTHI WG P + +YTGKEG PT+ ++ TVDHSG
Sbjct: 106 KSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT-GESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED----LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSG 286
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE) HSP 1 Score: 127 bits (320), Expect = 4.070e-32 Identity = 75/180 (41.67%), Postives = 100/180 (55.56%), Query Frame = 3
Query: 12 WGRMLQSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLK------IFFMSGLNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
W +ML+ L D+NSR S FR FR+PY F + + +V+ + F G G R VE K+LA L ILG+GN F Q+S MS +T Q+ F +F + I+ S N G L MK YD +GF+G +GS DVTHI W P + YTGKEG PT+ Y+ TV+H+G
Sbjct: 63 WAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHP-VEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQN--GELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAG 239
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 132 bits (333), Expect = 4.610e-32 Identity = 74/183 (40.44%), Postives = 100/183 (54.64%), Query Frame = 3
Query: 6 SGWGRMLQS------PHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLKIFFMSG--LNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHS 530
SGW LQ + D SR + FR FR+PYPF VE + +V++R FP G + R + V+LK+LA LQIL +GN F D +S +S TA + F RF + + L + M YD +GF+G GS+DVTHI WG P + YTGKEG+PT+ Y+ TVDH+
Sbjct: 88 SGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPT-GKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHT 269
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 124 bits (311), Expect = 2.240e-29 Identity = 74/180 (41.11%), Postives = 98/180 (54.44%), Query Frame = 3
Query: 12 WGRMLQSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLK------IFFMSGLNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
W RML+ L ++NSR S FR FR+P F + + +V+ + F G R VE K+LA L ILG+GN F Q+S MS +T Q+ F F + I+ S N G L MK YD +GF+G +GS DVTHIVW P + YTGKEG PT+ Y+ TV+H+G
Sbjct: 63 WARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHP-VEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQN--GELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAG 239
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 119 bits (299), Expect = 9.110e-28 Identity = 72/180 (40.00%), Postives = 96/180 (53.33%), Query Frame = 3
Query: 12 WGRMLQSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLK------IFFMSGLNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
W +ML+ L D+NS S FR FR+P F + + +V+ + F G R VE K+LA L ILG+GN F Q+S MS T Q+ F +F + I+ S N G L MK YD +GF+G +GS DVTHI W P + YTGKEG PT+ Y+ TV+H+G
Sbjct: 36 WAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHP-VEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQN--GELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAG 212
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 116 bits (291), Expect = 9.190e-27 Identity = 72/178 (40.45%), Postives = 95/178 (53.37%), Query Frame = 3
Query: 6 SGWGRMLQSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLKIFFMSG--LNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
S W LQ L D + + FR RFR+PYPF E +K+ + ++ F G + + +ELK+L GKGN FDD QLS MSES AQ+ F +F S F L + L M ++ +G TG GS+DVTHI P + +TGKEGFPT+ YE TVDH+G
Sbjct: 74 SAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSP-GEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAG 244
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 112 bits (281), Expect = 5.800e-25 Identity = 66/175 (37.71%), Postives = 90/175 (51.43%), Query Frame = 3
Query: 21 MLQSPHLTDTNSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLKIFFMSGLN----SLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
+L+ L D+ S + R FR+PY + + +V+ + F + VE K+LA L ILG+GN F Q+S MS T Q F +F + + ++ G L MK YD +GFTG VGS DVTHI W P + YTGKEGFPT+ Y+ TVDH+G
Sbjct: 26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHP-VEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAG 199
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.170e-23 Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 3
Query: 48 TNSRDSGHFRRRFRIPYPFLVEPMKVVQER-Q*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLKIFFMSG--LNSLGCLAVTMKVYDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
T +R S + R++ P E + + R F RG H + KIL +LQILG+GN FDD QLSLMS+ A + F +F + F L + M +YD +G TG +GS+DVTHI WG P + YTGKEGFPT+ Y+ TVDH+G
Sbjct: 198 TVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAG 362
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 108 bits (270), Expect = 1.450e-23 Identity = 68/190 (35.79%), Postives = 102/190 (53.68%), Query Frame = 2
Query: 302 QICKRFAEDLFHEWIKLP---GMPRSHDEGVRCG--GLHGGSRLV*CHPHCMGLHPGITYPSLHRQGRIPDSRLRGDGRPL----------GRVLGMTKGMTGVVNEKSIVRFDKTVQAVREGEPYRSMVYKLRDKDDVEQVEKGLHLIVDGEYHRWRSLVCPGKEAATREELAWSKRLESVRKDVECFF 826
+ CK FA +L+ E++ LP + + ++ R G G G + + + G+ P + Q RI + +G+P GRVL +T+G TG N+K+I+R+DK V +R Y YKL +D + EKG +L+VD YH+WR+L+ P K R +L +SKRLES RKDVEC+F
Sbjct: 117 RFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIY---WGMCP-------YNQARIYTGK---EGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYF 293
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE) HSP 1 Score: 108 bits (269), Expect = 2.390e-23 Identity = 72/168 (42.86%), Postives = 92/168 (54.76%), Query Frame = 3
Query: 51 NSRDSGHFRRRFRIPYPFLVEPMKVVQERQ*FPKRGARGCHRSRMVLVELKILASLQILGKGNSFDDNGQLSLMSESTAQSAFPRFASVSLKIFFMSGL----NSLGCLAVTMKV---YDAVGFTGVVGSSDVTHIVWGCTPASHTHLYTGKEGFPTLVYEATVDHSG 533
+SR++ FR FR+P+ F + +V R FP R + V +ELK+L LQ+LG+GN F D QLSLMS TA+ +F RF F SGL +L V KV Y +G G V S D THI W P S T+ + GKEG+ TLVYEA+ DHSG
Sbjct: 65 SSREAKAFRSDFRVPHEFFRHFVDLV--RTVFPT-ATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDC-----FSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSG 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2149.5660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2149.5660.1 >prot_H-paniculata_contig2149.5660.1 ID=prot_H-paniculata_contig2149.5660.1|Name=mRNA_H-paniculata_contig2149.5660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp MGLHPGITYPSLHRQGRIPDSRLRGDGRPLGRVLGMTKGMTGVVNEKSIVback to top mRNA from alignment at H-paniculata_contig2149:1117..3759- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2149.5660.1 ID=mRNA_H-paniculata_contig2149.5660.1|Name=mRNA_H-paniculata_contig2149.5660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2643bp|location=Sequence derived from alignment at H-paniculata_contig2149:1117..3759- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2149:1117..3759- >mRNA_H-paniculata_contig2149.5660.1 ID=mRNA_H-paniculata_contig2149.5660.1|Name=mRNA_H-paniculata_contig2149.5660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig2149:1117..3759- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |