mRNA_H-paniculata_contig2149.5659.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2149.5659.1
Unique NamemRNA_H-paniculata_contig2149.5659.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.460e-32
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRTMNLGTNCRYSNGPPARVEVEDGFFSMRRKQVTHYTYRVKNNKVAWL 648
            W +L+ P K    + +LA+SKRLESVRKDVECFFGI+KG FRILKL I + +   +DNV  T CILHNML+S+D     E + +     GL +AW H+          + S+     VEVE GF + R++ +  + YR   N +AWL
Sbjct:   94 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.130e-31
Identity = 66/147 (44.90%), Postives = 89/147 (60.54%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRTMNLGTNCRYSNGPPARVEVEDGFFSMRRKQVTHYTYRVKNNKVAWL 648
            W +L+ P K    + +LA+SKRLESVRKDVECFFGI+KGRFRILKL I + +   +DNV  T CILHNML+S+D     E + +     GL +AW H+          + S+     VEVE GF + R++ +  + YR   N +AWL
Sbjct:  335 WVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.860e-31
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRT--MNLGTNCRYSNGPPARVEVEDG--------FFSMRRKQVTHYTYRVKNNKVAWL 648
            W +L+ P K  A  E+ A+S+ LESVRKDVECFF ILKGRFRILKL + +R    +DN+  T CILHNML++FDG+ + E D+D     GL D W HD  T   ++G+  + S         E             ++++ +  ++YR ++N + WL
Sbjct:   12 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWL 168          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.800e-31
Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = -1
Query:  223 ELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRTMNLGTNCRYSNGPPARVEVEDGFFSMRRKQVTHYTYRVKNNKVAWL 603
            +LA+SKRLESVRKDVECFFGI+KGRFRILKL I + +   +DNV  T CILHNML+S+D     E + +     GL +AW H+          + S+     VEVE GF + R++ +  + YR   N +AWL
Sbjct:   64 DLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDMAWL 195          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.220e-29
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRT--MNLGTNCRYSNGPPARVEVEDG--------FFSMRRKQVTHYTYRVKNNKVAWL 648
            W +L+ P K  A  E+ A+S+ LESVRKDVECFFGILKGRFRILKL + +R    +DN+  T CILHNML++FDG+ + E D+D     GL D W HD  T   ++G+  + S         E             ++++ +  ++YR ++N + WL
Sbjct:  333 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWL 489          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 2.210e-29
Identity = 74/148 (50.00%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFD--GLKLHEPDMDGLLDAWLHD--DRTMNLGTNCRYS-NGPPARVEVEDGFFSMRRKQVTHYTYR-VKNNKVAWL 648
            WR+L+ P K    R +L +SKRLES RKDVEC+FGILKGRFRI KL I F +   +DNV  T CILHNML+SFD  G    EP+  G   A LH+  DR  N   +   S +G    VEVE GF ++R K VT++ YR  K   + WL
Sbjct:  260 WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG--SAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JP18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP18_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.810e-29
Identity = 61/147 (41.50%), Postives = 88/147 (59.86%), Query Frame = -1
Query:  217 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMDGLLDAWLHDDRTMNLGTNCRYSNGPP---ARVEVEDGFFSMRRKQVTHYTYRVKNNKVAWLRS 648
            W+ L  P +  +++ E  +S++LESVRKD EC FG++KGRFRI K+  L+R+   +DN+  T  ILHNML ++DG++L EPD D    A    D   N+       + P    A VE +DGF ++R+K VT++ YR     V W RS
Sbjct:   39 WKQLQSPIRAPSSKAESGFSRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDW---AGADGDLDKNIEHPVVRMSAPTHEDAVVECDDGFDALRQKLVTNFAYRWGQGTVGWKRS 182          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.390e-29
Identity = 74/148 (50.00%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  223 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFD--GLKLHEPDMDGLLDAWLHD--DRTMNLGTNCRYS-NGPPARVEVEDGFFSMRRKQVTHYTYR-VKNNKVAWL 648
            WR+L+ P K    R +L +SKRLES RKDVEC+FGILKGRFRI KL I F +   +DNV  T CILHNML+SFD  G    EP+  G   A LH+  DR  N   +   S +G    VEVE GF ++R K VT++ YR  K   + WL
Sbjct:  351 WRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAG--SAGLHNAADRDPNTDYSSVGSMDGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 496          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.010e-28
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = -1
Query:  361 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWLHDDRT 648
            W +L+ P K  A  E+ A+S+ LESVRKDVECFFGILKGRFRILKL + +R    +DN+  T CILHNML++FDG+ + E D+D     GL D W HD  T
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLT 102          
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Match: A0A6H5JLC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC3_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.120e-28
Identity = 62/150 (41.33%), Postives = 88/150 (58.67%), Query Frame = -1
Query:  217 WRSLVCPGKEAATREELAWSKRLESVRKDVECFFGILKGRFRILKLPILFRESA*VDNVV*T*CILHNMLYSFDGLKLHEPDMD-----GLLDAWL-HDDRTMNLGTNCRYSNGPPARVEVEDGFFSMRRKQVTHYTYRVKNNKVAWLRS 648
            W+ L  P +  + + E  + ++LESVRKD EC FG++KGRFRI K+  L+R    +DN+  T  ILHNML ++DG++L EPD D     G LD  + H D  M+  T+        A VE + GF ++R+K VT++ YR     V W RS
Sbjct:    8 WKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRTKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDEDIVHPDVRMSAPTH------EDAVVECDAGFEALRQKLVTNFAYRWGQGTVGWKRS 151          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2149.5659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTC6_9PHAE1.460e-3244.22DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE1.130e-3144.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L135_9PHAE2.860e-3140.13Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R0_9PHAE7.800e-3146.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE1.220e-2940.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.210e-2950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP18_9PHAE4.810e-2941.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE6.390e-2950.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE2.010e-2855.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLC3_9PHAE3.120e-2841.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2149contigH-paniculata_contig2149:571..1218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size384
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2149.5659.1prot_H-paniculata_contig2149.5659.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2149 727..1110 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.353072-UTR-H-paniculata_contig2149:570..7261622929580.353072-UTR-H-paniculata_contig2149:570..726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2149 571..726 +
1691480922.725423-UTR-H-paniculata_contig2149:570..7261691480922.725423-UTR-H-paniculata_contig2149:570..726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2149 571..726 +
1622929580.399103-UTR-H-paniculata_contig2149:1110..12181622929580.399103-UTR-H-paniculata_contig2149:1110..1218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2149 1111..1218 +
1691480922.7459095-UTR-H-paniculata_contig2149:1110..12181691480922.7459095-UTR-H-paniculata_contig2149:1110..1218Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2149 1111..1218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.373302-CDS-H-paniculata_contig2149:726..11101622929580.373302-CDS-H-paniculata_contig2149:726..1110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2149 727..1110 +
1691480922.735883-CDS-H-paniculata_contig2149:726..11101691480922.735883-CDS-H-paniculata_contig2149:726..1110Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2149 727..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2149.5659.1

>prot_H-paniculata_contig2149.5659.1 ID=prot_H-paniculata_contig2149.5659.1|Name=mRNA_H-paniculata_contig2149.5659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
MKIHTALCPIYTLKSFLTRLRSQPSHFVVFHPVCVVRDLLPSHGEKPVLD
FDARWRPVRIATVRAQVHCAIVVKPCVKETIHIRLVQLQSVERIQHVVED
TSCLNHVVYLSGLPEKNGQLQNSEAAL*
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mRNA from alignment at H-paniculata_contig2149:571..1218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2149.5659.1 ID=mRNA_H-paniculata_contig2149.5659.1|Name=mRNA_H-paniculata_contig2149.5659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig2149:571..1218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCAGAGCGAGCGATATCATGCCTAGCAAAATACTGTGGCGGCCATTC CGTGCCCATCTGCCGTTTATTCACGATGGTCGACAATTATATCGCTTGCT ACAGCTCATCCTGCCAACCAAGCTGTTAAATCTCACAACATAAATCGCCG CGACACATGAAAATCCATACAGCACTATGTCCAATCTACACTCTCAAATC ATTTCTGACCAGATTGCGATCGCAGCCAAGCCACTTTGTTGTTTTTCACC CTGTATGTGTAGTGCGTGACTTGCTTCCTTCTCATGGAGAAAAACCCGTC CTCGACTTCGACGCGCGCTGGCGGCCCGTTCGAATAGCGACAGTTCGTGC CCAAGTTCATTGTGCGATCGTCGTGAAGCCATGCGTCAAGGAGACCATCC ATATCCGGCTCGTGCAACTTCAGTCCGTCGAACGAATACAGCATGTTGTG GAGGATACATCATGTCTAAACCACGTTGTCTACCTAAGCGGACTCCCTGA AAAGAATGGGCAGCTTCAAAATTCTGAAGCGGCCCTTTAGAATGCCGAAG AAGCATTCCACGTCCTTTCGAACGCTCTCGAGACGTTTACTCCACGCTAA CTCCTCTCGAGTTGCAGCTTCTTTTCCCGGGCACACTAGACTCCTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2149:571..1218+

>mRNA_H-paniculata_contig2149.5659.1 ID=mRNA_H-paniculata_contig2149.5659.1|Name=mRNA_H-paniculata_contig2149.5659.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig2149:571..1218+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAATCCATACAGCACTATGTCCAATCTACACTCTCAAATCATTTCT
GACCAGATTGCGATCGCAGCCAAGCCACTTTGTTGTTTTTCACCCTGTAT
GTGTAGTGCGTGACTTGCTTCCTTCTCATGGAGAAAAACCCGTCCTCGAC
TTCGACGCGCGCTGGCGGCCCGTTCGAATAGCGACAGTTCGTGCCCAAGT
TCATTGTGCGATCGTCGTGAAGCCATGCGTCAAGGAGACCATCCATATCC
GGCTCGTGCAACTTCAGTCCGTCGAACGAATACAGCATGTTGTGGAGGAT
ACATCATGTCTAAACCACGTTGTCTACCTAAGCGGACTCCCTGAAAAGAA
TGGGCAGCTTCAAAATTCTGAAGCGGCCCTTTAGATGAAAATCCATACAG
CACTATGTCCAATCTACACTCTCAAATCATTTCTGACCAGATTGCGATCG
CAGCCAAGCCACTTTGTTGTTTTTCACCCTGTATGTGTAGTGCGTGACTT
GCTTCCTTCTCATGGAGAAAAACCCGTCCTCGACTTCGACGCGCGCTGGC
GGCCCGTTCGAATAGCGACAGTTCGTGCCCAAGTTCATTGTGCGATCGTC
GTGAAGCCATGCGTCAAGGAGACCATCCATATCCGGCTCGTGCAACTTCA
GTCCGTCGAACGAATACAGCATGTTGTGGAGGATACATCATGTCTAAACC
ACGTTGTCTACCTAAGCGGACTCCCTGAAAAGAATGGGCAGCTTCAAAAT
TCTGAAGCGGCCCTTTAG
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