mRNA_H-paniculata_contig21483.5658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21483.5658.1
Unique NamemRNA_H-paniculata_contig21483.5658.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 138 bits (348), Expect = 2.760e-31
Identity = 81/195 (41.54%), Postives = 110/195 (56.41%), Query Frame = 3
Query:  732 LNGPEAGKWHA----KWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAV 1304
            + GPEA  W A    +  +L ENGTW+      LP GRKA+  KWIFKRKL E G + RYKARL+AQGF+Q  G D+ E  A V R    R + ++A++   V++  DV  AYL+  +EE +F++ PP      RD   V  L KSLY LK++G  W+   D  L  +   +S  D CLY  R+  G   L++ V
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYLNGELEESIFMRQPPGYEDENRDA--VCSLQKSLYGLKQAGYVWNKKFDQVLKRMKFQQSKNDPCLYVRRNGKGYTYLVIYV 190          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 139 bits (351), Expect = 7.340e-31
Identity = 88/251 (35.06%), Postives = 138/251 (54.98%), Query Frame = 3
Query:  708 EPNSAAEPLNGPEAGKWHAKW----GALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGE------INLLVAVYV*QPDHCWPS*ERRRVQA*QKSAF*DER--LGLSLARVGNR 1424
            +P++ +E +   E+  W A       AL  N TWE     RLP GRKA+  KW +KRK  E G + RYKARL+AQG+SQ  G+D+ E  A V R +  RT+ +LA++ N +++ +D+  AYL A ++E++++K PP    F +    V  L KSLY LK+S R W+  +D  L  +   ++  D CLY    +G +      ++ +VAVY  + +  +    +R  Q  + S   D +  LG+ +A  G+R
Sbjct:  351 QPHTYSEAIESTESTAWRAAMQEEINALQGNDTWELV---RLPLGRKAVGCKWTYKRKENENGEIVRYKARLVAQGYSQKFGQDYDEVFAPVIRQATFRTILTLASKQNMIVKHLDIKNAYLHAELQEDIYMKQPPG---FTKGNDLVCHLKKSLYGLKQSARAWNAKIDRVLKEMQFQQAEADQCLYIRTHEGKQDYILIYVDDIVAVYNTKEE--YEELRKRLEQHFKLSCLGDIKHFLGIRVANNGDR 593          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A8J6L6Q6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L6Q6_TENMO)

HSP 1 Score: 139 bits (351), Expect = 1.140e-30
Identity = 170/747 (22.76%), Postives = 267/747 (35.74%), Query Frame = 1
Query:    1 GIKQEFSAAYKPQQNDMVERSWRNIFEMARANMITANMGRRH*AEAVRSALYCLNRVPTRPHNGGTPYEKWYGELPKLDHLRFFGCKV*VMFQSQQRRKLDDEAWAGVFLGYDEDSPSYRIYSPENKSVQLSRNVRSDEEDFVTGHPGQKEQDGTRNMKLFFQHRQSRERSLDPARKASKETLTRKTGRQRHKCRRYCRHIRCRPPAQNHSVS*TMTMMT-----KVMLTPK*RMRSPQGGSRIPRQNH*TVQRRENGTRNGGRWWKMEHGKANTRGGYRQGGRQFVRNGFSSGN*GRAASWHATKRDCWLKVFHSWRVKISLKPVPS*LACRFYVLFVA*LPNIISY*KAWT*MRRI*APP*KKSCLLSYPPRFPLSTETYRLCAAWVKACTISRRAAETGVTILTIFLLG*DSTVPLPTHACTFLATMGER*TFWWPSMFDNLIIAGRRENVDEFKHNKSQRFRMKDLGSLSRVLGTDVRRDRPEGTITTSESSYI----------------------------------------RESNG---------------------------------------------------------HGLEGFVDADWAEDVEDRKPTIRYVLKHNGGAISWCSRKQQLVTWSSTEAGRHILGTTDLEC---------------KRSTTLIEDNTSAINFSKGSGTHCRTKHIDVRWPGTRECIQEGVLSLKYVQTGDQLAEILTKGLSKAKFQ 1890
            G++ + +  Y PQQN + ER+ R I E AR+ +  A + + + AEAV +A+Y +NR PTR  N  TP E W G  P + HL+ FGCK  V      R K D      +F+GY E+S  YR Y P+ + V   R+    E +F+      +    T  + +        E         +K   T      ++  R+  R  + +P   +  V   +  +T     +   TP+  + SPQ                ENGT      W +   K N +           R  F         ++    R   L+   S   K  LK            +    + N   +               K+   +  P  F  + +  ++C    KA    ++ +    + L   L     T    T  C +    G +       + D LI +         K++ +++F MKDLG +S+ LG +  RD    TI   +S YI                                        RE+ G                                                         + +  + DADW  D+ DR+ T  +++ HN   +SW S+KQ  V  S+TEA    L  T  E                +  TTL  DN  A++ +  +G   RTKHID+R    R+ +++  + +K + T D +A+ LTK L  AKFQ
Sbjct:  554 GVRHQLTIPYTPQQNGVAERTNRTIVEKARSLLSDAGLPKAYWAEAVSTAVYLINRTPTRVLNFKTPEEIWTGRKPDISHLKIFGCKAMVYVPKPLRLKWDSPTRDAIFIGYPEESKGYRFYDPQTRKVFKGRDAVFMETEFLAQLKRNETNVATFELAVPTDDEDDEEPQTASPTATTKIPETINEEEPQNMLRKTTR--KPKPKKDDDYVYYKINAITHENEDEDPQTPEEALNSPQSHLWKSAMEEEYKALMENGT------WTLTDPKPNAK-------VLKTRIHFEE-------TYSPVIRMETLRFLISMAAKYDLK------------IHQLDVKNAFLHGDL------------KEELYIQQPTGFEQTGKENQICKLR-KAMYGLKQGSRAWNSKLNSVLTKIGFTRS-QTDPCVYTKRAGRKMELLAVYVDDILIFSNDDFATSSTKNSLNEKFHMKDLGQVSKCLGINFTRDWKRHTIHIDQSDYILNLLKRFKMEDSHPVRTPEDVNQKLDLHTNETETTPIFPYREAIGGLLYLTQISRPDIAHAVNYLSRFNQNPDIVHWRAVKRILRYLKSTISLKMEFSSLEENTITAYCDADWGNDLADRRSTTGFIIFHNRNPVSWSSKKQPTVALSTTEAEYMALSYTCQELIWLRSLASELDPTSVEEPTTLYNDNKGAVDLASDAGFSQRTKHIDLRHHFIRQLVEDAKIKVKLISTQDMIADALTKPLCVAKFQ 1252          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A177T7I3_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177T7I3_9BASI)

HSP 1 Score: 138 bits (348), Expect = 2.390e-30
Identity = 83/204 (40.69%), Postives = 122/204 (59.80%), Query Frame = 3
Query:  708 EPNSAAEPLNGPEAGKWHA----KWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRD-IPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAV 1304
            EP + A+ L+  +  +W A    ++ +L+E GTWE  HP   PAGRK I  +W++K K    G   R K+RL+AQG++Q+EG DF ET A VAR+S LR + +LA +    L GMDV  AYL+  ++ +L+++ PP     Y D    V RL ++LY LK+SGR W + L D LV  G  +  ++ CL++ + D G   +LV V
Sbjct:  524 EPTTFAQALSREDKAEWKASMDEEYASLIEMGTWELCHP---PAGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGIDFDETFAPVARLSALRIMVTLAIQLGLRLHGMDVKTAYLNGELDVDLYMRQPPG----YDDGSGRVCRLLRTLYGLKQSGRYWYHKLRDRLVAAGFSQLKSEPCLFYKQSDQGPTIILVYV 720          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A2A4JV98_HELVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JV98_HELVI)

HSP 1 Score: 133 bits (335), Expect = 2.630e-30
Identity = 73/209 (34.93%), Postives = 119/209 (56.94%), Query Frame = 3
Query:  690 AEPAGREPNSAAEPLNGPEAGKW----HAKWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAV 1304
            A P  +EP S  E L+GP A +W    ++++ +L++N TW       LP  ++ I  KW+FK K    G + RYKARL+ +GF+Q +G ++ E  A V R + +R + +LA ++N  +E MD   A+L   ++ E+++  PP     Y     V +L KS+Y LK++ R W+  L   L  IGL  S+ D C+Y+ ++DG  + +L+ V
Sbjct:  141 AVPLLKEPQSVEEALSGPMAKEWKDAMNSEFESLLQNNTWTLVT---LPENKRVIPCKWVFKMKTNANGEVVRYKARLVIKGFAQKKGIEYNEVFAPVVRHTSIRYLFALAVKYNLYVEQMDAVTAFLQGDIDTEIYMNQPPS----YEHGQEVCKLNKSIYGLKQASRQWNLKLTSVLKNIGLKSSSVDPCVYYKKEDGSIVYILIYV 342          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A1W7R6C8_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6C8_AEDAL)

HSP 1 Score: 138 bits (348), Expect = 2.660e-30
Identity = 77/204 (37.75%), Postives = 119/204 (58.33%), Query Frame = 3
Query:  705 REPNSAAEPLNGPEAGKWHAKWGALVE----NGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAV 1304
            +EP++  E L G    +W +   A +E    NGTW+     +LP GRKA+  +W++K K    G + +YKARL+AQGFSQ  G+D+ E  A V + + LRT+ ++A++   +L+  DV  AYL   +EEEL+++ PP      ++   V RL +S+Y LK+S R W++ L   L G+G ++S  D C Y    +G  + LLV V
Sbjct:  745 KEPSNLKEALTGANRAEWRSAMEAEMESHEDNGTWDLV---KLPDGRKAVGCRWVYKLKRNAAGKVVKYKARLVAQGFSQKFGQDYDEVFAPVTKQTTLRTLLAVASKKKLILKHFDVKTAYLYGELEEELYMRQPPGFEVNGKE-ELVCRLRRSIYGLKQSARCWNHRLHSVLRGLGFEQSAADPCFYTKVINGKRVYLLVYV 944          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A182G9H3_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9H3_AEDAL)

HSP 1 Score: 133 bits (334), Expect = 3.450e-30
Identity = 81/205 (39.51%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  708 EPNSAAEPLNGPEAGKWHA----KWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAVYV 1310
            EP +  E L+GPE+  W A    +  +  EN TW       LP+GR  I  KWIFKR++ E G + RYKARL+AQGF+Q  G D+ E  A V +    RT+ S+A + N +++ MDV  AYL+  ++E +F+K PP     + +   V  L K LY LKE+   W+  L+  L  +G   S  D CLY  R+  G +   +AVYV
Sbjct:  137 EPRTIKEALDGPESELWKAAIEEELQSHKENCTWNVVP---LPSGRITIGCKWIFKRRMDESGKVVRYKARLVAQGFTQKIGTDYDEVFAPVVKQVTFRTLLSVAHQRNMLIKHMDVKTAYLNGELQETVFMKPPPGCD--FGNQNLVCHLQKGLYGLKEAANIWNKKLNSILRKLGFKPSENDPCLYSKRNSDGTM-AYIAVYV 335          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A6S7H257_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H257_PARCT)

HSP 1 Score: 133 bits (335), Expect = 5.370e-30
Identity = 81/209 (38.76%), Postives = 122/209 (58.37%), Query Frame = 3
Query:  708 EPNSAAEPLNGPEAGKW----HAKWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPE-VSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFS--RDDGGEINLLV-AVYV 1310
            EP    + LNG ++ KW     A++ +LV+  TW+   P   P     + +KW+FK K +  G + RYKARL+AQG+SQ  G D+ E  A VAR S +RT+ +LA  H+  +  MDV  A+L+  +E +++++ P   V P   D   V +L +S+Y LK+S R W+  LD+FL+  G  +S  DSCLY    + D G I+ ++ AVYV
Sbjct:  212 EPKYVTDALNGTKSAKWKQALEAEYNSLVKCETWDLVPP---PDDACIVGSKWVFKVKRKANGEVDRYKARLVAQGYSQTYGVDYEEVFAPVARYSSIRTLLALANAHDLEIHQMDVTTAFLNGSLEHDIYMEQPEGFVDPNCPD--HVCKLKRSIYGLKQSARCWNQTLDNFLIKNGYRKSNADSCLYVKSVKQDNGRISFVILAVYV 415          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY)

HSP 1 Score: 136 bits (343), Expect = 1.200e-29
Identity = 78/204 (38.24%), Postives = 114/204 (55.88%), Query Frame = 3
Query:  699 AGREPNSAAEPLNGPEAGKWH----AKWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLV 1298
            AG EP S AE    PE  +W     A++  L   GTWE +    LP  R A+  KW+F+RK  + G + +YKARL+AQG+SQ+ G DF ET A V R+  +R + +LA  +N+ +  MDV  AYL+  ++EE++++ P     F      + RL K+LY LK+SGR W+  L   L  +G  R   D C+Y      GE+ ++ 
Sbjct:  903 AGDEPRSLAEAQASPEWPEWEKAVKAEYDQLQGMGTWELQD---LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQP---EGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQIIT 1100          
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 129 bits (323), Expect = 1.200e-29
Identity = 79/205 (38.54%), Postives = 117/205 (57.07%), Query Frame = 3
Query:  708 EPNSAAEPLNGPEAGKWHA----KWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLREGGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFVLEGMDVDAAYLSAPVEEELFVKLPPEVSPFYR--DIPFVRRLGKSLYDLKESGRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAV 1304
            EP+S  E +   E+  W A    ++ +L+ENGTW       LPAGRKAI +KW+FK+K    G + ++KARL+AQGFSQ  G D+    A VA  + LRT+ S+A +    +  +DV +AYL   ++EEL+++ P     F R  +   V RL +SLY LK+  + W++ +   L  IG  +S  D CL+     G +I LL+ V
Sbjct:    8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYLHGQLKEELYMQQP---KGFVRRGEEKLVCRLQRSLYGLKQGAKVWNDTICAILGEIGFHQSRADPCLFSKSVSGRQIYLLIYV 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21483.5658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL2.760e-3141.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2M4CK12_ANODA7.340e-3135.06Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A8J6L6Q6_TENMO1.140e-3022.76Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A177T7I3_9BASI2.390e-3040.69Integrase catalytic domain-containing protein n=1 ... [more]
A0A2A4JV98_HELVI2.630e-3034.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1W7R6C8_AEDAL2.660e-3037.75Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]
A0A182G9H3_AEDAL3.450e-3039.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7H257_PARCT5.370e-3038.76Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A401GYH9_9APHY1.200e-2938.24Uncharacterized protein n=6 Tax=Sparassis crispa T... [more]
A0A182GDL1_AEDAL1.200e-2938.54Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21483contigH-paniculata_contig21483:1548..4046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score135.2
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog4538.ORGLA04G0228900.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37YYP@33090,3GQD7@35493,3IKKZ@38820,3M3FD@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons4
Model size1902
Cds size735
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21483.5658.1prot_H-paniculata_contig21483.5658.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21483 2538..3468 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.096309-UTR-H-paniculata_contig21483:1547..18031622929580.096309-UTR-H-paniculata_contig21483:1547..1803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 1548..1803 -
1691480922.5990758-UTR-H-paniculata_contig21483:1547..18031691480922.5990758-UTR-H-paniculata_contig21483:1547..1803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 1548..1803 -
1622929580.1095207-UTR-H-paniculata_contig21483:1834..19951622929580.1095207-UTR-H-paniculata_contig21483:1834..1995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 1835..1995 -
1691480922.611558-UTR-H-paniculata_contig21483:1834..19951691480922.611558-UTR-H-paniculata_contig21483:1834..1995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 1835..1995 -
1622929580.130047-UTR-H-paniculata_contig21483:2365..25371622929580.130047-UTR-H-paniculata_contig21483:2365..2537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 2366..2537 -
1691480922.620955-UTR-H-paniculata_contig21483:2365..25371691480922.620955-UTR-H-paniculata_contig21483:2365..2537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 2366..2537 -
1622929580.1905622-UTR-H-paniculata_contig21483:3468..40461622929580.1905622-UTR-H-paniculata_contig21483:3468..4046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 3469..4046 -
1691480922.651993-UTR-H-paniculata_contig21483:3468..40461691480922.651993-UTR-H-paniculata_contig21483:3468..4046Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21483 3469..4046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929580.1500976-CDS-H-paniculata_contig21483:2537..31491622929580.1500976-CDS-H-paniculata_contig21483:2537..3149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21483 2538..3149 -
1691480922.631014-CDS-H-paniculata_contig21483:2537..31491691480922.631014-CDS-H-paniculata_contig21483:2537..3149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21483 2538..3149 -
1622929580.1681082-CDS-H-paniculata_contig21483:3345..34681622929580.1681082-CDS-H-paniculata_contig21483:3345..3468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21483 3346..3468 -
1691480922.641845-CDS-H-paniculata_contig21483:3345..34681691480922.641845-CDS-H-paniculata_contig21483:3345..3468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21483 3346..3468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21483.5658.1

>prot_H-paniculata_contig21483.5658.1 ID=prot_H-paniculata_contig21483.5658.1|Name=mRNA_H-paniculata_contig21483.5658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MPAILPTHSLPATSAKPFSVLNDDDDDKSNVDSKMKDAEPAGREPNSAAE
PLNGPEAGKWHAKWGALVENGTWESEHPGRLPAGRKAIRTKWIFKRKLRE
GGIMARYKARLLAQGFSQLEGEDFFETSALVARMSILRTVCSLAAEHNFV
LEGMDVDAAYLSAPVEEELFVKLPPEVSPFYRDIPFVRRLGKSLYDLKES
GRNWSNNLDDFLVGIGLDRSTTDSCLYFSRDDGGEINLLVAVYV*
back to top

mRNA from alignment at H-paniculata_contig21483:1548..4046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21483.5658.1 ID=mRNA_H-paniculata_contig21483.5658.1|Name=mRNA_H-paniculata_contig21483.5658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2499bp|location=Sequence derived from alignment at H-paniculata_contig21483:1548..4046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATCAAGCAGGAGTTCTCTGCCGCCTACAAACCGCAACAAAACGATAT GGTGGAACGCAGCTGGCGCAACATATTCGAGATGGCAAGAGCCAACATGA TCACCGCCAACATGGGTCGTCGACATTGAGCGGAAGCGGTGCGCTCGGCA CTGTACTGCCTAAATCGCGTCCCGACGCGACCGCACAACGGAGGAACGCC GTACGAAAAATGGTACGGCGAGTTACCAAAGTTGGACCACCTTCGCTTCT TCGGCTGCAAGGTGTAGGTTATGTTCCAGTCGCAGCAGAGACGCAAGCTC GATGACGAAGCATGGGCGGGGGTGTTTCTGGGGTACGACGAGGACAGCCC GAGTTATCGCATATATAGCCCGGAAAACAAGAGCGTCCAGTTGAGCAGGA ACGTGAGATCTGATGAAGAGGACTTCGTAACGGGTCATCCCGGGCAGAAG GAGCAGGACGGGACGCGCAACATGAAATTATTTTTTCAACACCGCCAGTC ACGAGAGCGGTCACTCGACCCCGCGCGCAAGGCGAGCAAGGAAACACTAA CACGCAAGACTGGACGTCAACGTCACAAATGCCGGCGATATTGCCGACAC ATTCGCTGCCGGCCACCAGCGCAAAACCATTCAGTGTCTTGAACGATGAC GATGATGACAAAAGTAATGTTGACTCCAAAATGAAGGATGCGGAGCCCGC AGTCGAAGTTGCACCATCAGCAGGGATAGCCGCACCCGCGTCGCGGGGGA ACACGACGAAGCAGTCGGGGACAGAGGCACAGCGTCCGCGAGATTGGTCA CCAATACGAACATGGGCGAGAGCGAGGGAAAACCGCAAAGAAGATCCAGG CGCTACCGCGCGCGTGGCAAAAGTGGAAGGCACTGGCAACCTTACAGGGG CGGGAGCCGAATTCCGCGGCAGAACCATTGAACGGTCCAGAGGCGGGAAA ATGGCACGCGAAATGGGGGGCGTTGGTGGAAAATGGAACATGGGAAAGCG AACACCCGGGGAGGTTACCGGCAGGGCGGAAGGCAATTCGTACGAAATGG ATTTTCAAGCGGAAACTGAGGGAGGGCGGCATCATGGCACGCTACAAAGC GCGACTGCTGGCTCAAGGTTTTTCACAGCTGGAGGGTGAAGATTTCTTTG AAACCAGTGCCCTCGTAGCTCGCATGTCGATTTTACGTACTGTTTGTAGC CTAGCTGCCGAACATAATTTCGTATTAGAAGGCATGGACGTAGATGCGGC GTATTTGAGCGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCG AGGTTTCCCCTTTCTACCGAGACATACCGTTTGTGCGCCGCCTGGGTAAA AGCCTGTACGATCTCAAGGAGAGCGGCCGAAACTGGAGTAACAATCTTGA CGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATGCT TGTACTTTTCTCGCGACGATGGGGGAGAGATAAACCTTCTGGTGGCCGTC TATGTTTGACAACCTGATCATTGCTGGCCGTCGTGAGAACGTAGACGAGT TCAAGCATAACAAAAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTC TCGCGCGTGTTGGGAACAGATGTACGACGTGACCGCCCTGAGGGTACCAT AACCACCTCGGAGAGTAGTTACATCCGCGAGGTACTAAAAAGATACGGTT TTGACAAGTGTCGAGGGTTACCCGCCCCTGTAAAGGGAAAAATGAAGATT TCGGCACCCAAGTCGGCCGACAAGCCCTCCGAATCGACCTCACTTTGAGT TGTACTGTCGGACATAGGCGCAGGAGTACAAGAAAACAGCAGAGGGAGAA GTGGCAATTCAACTGAATACAGAGGCATGGTAGGATCACTCATGTACGCC TCGACAGGAACTAGACCTGATATGGCATACACGGTTCACCAAGGAGCGCG TTGTATGGAAGACCCATGTCGGGGAAGACTTCCGTACATGCAAATGAATT TTTCATTTTCTCAGTACTGTGTCTGGCCTCGGCACTACCTTCGACGGTAA GAGTAACGGTCATGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAG ATGTCGAGGACCGAAAGCCCACAATAAGATACGTACTCAAACATAACGGT GGTGCGATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCTAG TACAGAGGCAGGGTAGATTGCTGCAGGAGAAGCGGGAAAGGAGACGGCAT ATCTTAGGAACGACGGATCTCGAATGCAAGAGGAGCACGACATTGATTGA GGACAATACATCAGCTATTAATTTCAGTAAGGGATCTGGCACACACTGCA GGACAAAGCACATCGATGTGCGCTGGCCCGGAACTCGAGAGTGCATTCAG GAAGGAGTATTGTCGTTGAAATACGTGCAGACCGGCGACCAACTTGCTGA AATTTTAACGAAAGGATTGAGCAAAGCAAAGTTTCAGAGATTGAGAAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21483:1548..4046-

>mRNA_H-paniculata_contig21483.5658.1 ID=mRNA_H-paniculata_contig21483.5658.1|Name=mRNA_H-paniculata_contig21483.5658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig21483:1548..4046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGCGATATTGCCGACACATTCGCTGCCGGCCACCAGCGCAAAACC
ATTCAGTGTCTTGAACGATGACGATGATGACAAAAGTAATGTTGACTCCA
AAATGAAGGATGCGGAGCCCGCAATGCCGGCGATATTGCCGACACATTCG
CTGCCGGCCACCAGCGCAAAACCATTCAGTGTCTTGAACGATGACGATGA
TGACAAAAGTAATGTTGACTCCAAAATGAAGGATGCGGAGCCCGCAGGGC
GGGAGCCGAATTCCGCGGCAGAACCATTGAACGGTCCAGAGGCGGGAAAA
TGGCACGCGAAATGGGGGGCGTTGGTGGAAAATGGAACATGGGAAAGCGA
ACACCCGGGGAGGTTACCGGCAGGGCGGAAGGCAATTCGTACGAAATGGA
TTTTCAAGCGGAAACTGAGGGAGGGCGGCATCATGGCACGCTACAAAGCG
CGACTGCTGGCTCAAGGTTTTTCACAGCTGGAGGGTGAAGATTTCTTTGA
AACCAGTGCCCTCGTAGCTCGCATGTCGATTTTACGTACTGTTTGTAGCC
TAGCTGCCGAACATAATTTCGTATTAGAAGGCATGGACGTAGATGCGGCG
TATTTGAGCGCCCCCGTAGAAGAAGAGCTGTTTGTTAAGCTACCCCCCGA
GGTTTCCCCTTTCTACCGAGACATACCGTTTGTGCGCCGCCTGGGTAAAA
GCCTGTACGATCTCAAGGAGAGCGGCCGAAACTGGAGTAACAATCTTGAC
GATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTACCGACTCATGCTT
GTACTTTTCTCGCGACGATGGGGGAGAGATAAACCTTCTGGTGGCCGTCT
ATGTTTGAGGGCGGGAGCCGAATTCCGCGGCAGAACCATTGAACGGTCCA
GAGGCGGGAAAATGGCACGCGAAATGGGGGGCGTTGGTGGAAAATGGAAC
ATGGGAAAGCGAACACCCGGGGAGGTTACCGGCAGGGCGGAAGGCAATTC
GTACGAAATGGATTTTCAAGCGGAAACTGAGGGAGGGCGGCATCATGGCA
CGCTACAAAGCGCGACTGCTGGCTCAAGGTTTTTCACAGCTGGAGGGTGA
AGATTTCTTTGAAACCAGTGCCCTCGTAGCTCGCATGTCGATTTTACGTA
CTGTTTGTAGCCTAGCTGCCGAACATAATTTCGTATTAGAAGGCATGGAC
GTAGATGCGGCGTATTTGAGCGCCCCCGTAGAAGAAGAGCTGTTTGTTAA
GCTACCCCCCGAGGTTTCCCCTTTCTACCGAGACATACCGTTTGTGCGCC
GCCTGGGTAAAAGCCTGTACGATCTCAAGGAGAGCGGCCGAAACTGGAGT
AACAATCTTGACGATTTTCTTGTTGGGATAGGACTCGACCGTTCCACTAC
CGACTCATGCTTGTACTTTTCTCGCGACGATGGGGGAGAGATAAACCTTC
TGGTGGCCGTCTATGTTTGA
back to top