mRNA_H-paniculata_contig21469.5652.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI) HSP 1 Score: 110 bits (274), Expect = 1.060e-26 Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1
Query: 1 MEDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
MEDDLS+VFH+PVDLDAYPSY EKVDEPMD GTIK KLDNWEYRRNDP+GF RD RLV
Sbjct: 424 MEDDLSLVFHDPVDLDAYPSYEEKVDEPMDLGTIKGKLDNWEYRRNDPMGFLRDGRLV 481
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A7R9W4F0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4F0_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 2.340e-8 Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 4 EDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
ED S +F EPV +P Y E +D+PMD GTI+ K+DN +Y+ P F RD+R V
Sbjct: 41 EDSYSGIFQEPVSTTDFPDYEEYIDQPMDLGTIRTKVDNRKYQ--SPEQFARDVRKV 95
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A1E7EUY5_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUY5_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 2.650e-8 Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query: 22 VFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
+F EPV D +P Y E+V PMD+GT+K KLDN EYR + +D RLV
Sbjct: 1 IFSEPVPRDDFPEYYEQVKTPMDYGTMKKKLDNGEYRSGQAM--QKDFRLV 49
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: E1ZPU3_CHLVA (Bromo domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPU3_CHLVA) HSP 1 Score: 53.9 bits (128), Expect = 4.770e-8 Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
F+ PVDL YP YAE V PMDFGTIK ++D YR D F D+RLV
Sbjct: 4 FNAPVDLRQYPDYAETVSRPMDFGTIKRRIDVGLYRHPDE--FLSDVRLV 51
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A8J6ELY2_ELECQ (Uncharacterized protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6ELY2_ELECQ) HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7 Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query: 25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
F +PV+ +YP Y + +D PMDF T+KAKL+ EY +DPL F +D+RL+
Sbjct: 1323 FRQPVNSVSYPDYQDIIDNPMDFSTVKAKLEAGEY--SDPLEFGQDVRLI 1370
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A2P6THZ3_CHLSO (Alkaline phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THZ3_CHLSO) HSP 1 Score: 54.7 bits (130), Expect = 3.400e-7 Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query: 25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
F+ PVDL YP YAE + PMDFGTIK ++D YR D F D+RLV
Sbjct: 170 FNAPVDLKQYPDYAEAIKTPMDFGTIKRRIDQGGYRHPDE--FLADVRLV 217
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A0L0HH39_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HH39_SPIPD) HSP 1 Score: 52.4 bits (124), Expect = 2.220e-6 Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 16 SVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
S VF EPVDL+ +P Y + VD+PMDFGTI AKLD+ Y + F +D+ LV
Sbjct: 551 SDVFAEPVDLERFPQYLDFVDQPMDFGTIGAKLDDNCYTKIQD--FVKDVLLV 601
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A7S3P5L3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5L3_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 2.240e-6 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query: 25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYR 132
F EPV D +P Y EKV +PMD+GT+KAKL+N EYR
Sbjct: 2244 FSEPVPKDEFPDYYEKVKQPMDYGTMKAKLENKEYR 2279
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A6P4YCD1_BRABE (peregrin-like isoform X1 n=38 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YCD1_BRABE) HSP 1 Score: 51.6 bits (122), Expect = 4.170e-6 Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query: 4 EDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
E D +F EPV LD P Y E + EPMDF T++ K++ +YR D F RD L+
Sbjct: 646 EKDAGKIFSEPVPLDEVPDYLEYIKEPMDFATMRTKVEGHQYRSLDD--FERDFELI 700
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: UPI00067BDC41 (bromodomain adjacent to zinc finger domain protein 1A n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067BDC41) HSP 1 Score: 51.6 bits (122), Expect = 4.180e-6 Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query: 25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPL 147
F+EPVD+DA P Y E + EPMDF T+K KL+ EYR + L
Sbjct: 1342 FYEPVDVDAVPDYLEVISEPMDFTTMKQKLEGGEYRSDGEL 1382 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21469.5652.1 >prot_H-paniculata_contig21469.5652.1 ID=prot_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp MEDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGback to top mRNA from alignment at H-paniculata_contig21469:2831..3004+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21469.5652.1 ID=mRNA_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig21469:2831..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21469:2831..3004+ >mRNA_H-paniculata_contig21469.5652.1 ID=mRNA_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig21469:2831..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |