mRNA_H-paniculata_contig21469.5652.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21469.5652.1
Unique NamemRNA_H-paniculata_contig21469.5652.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.060e-26
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MEDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            MEDDLS+VFH+PVDLDAYPSY EKVDEPMD GTIK KLDNWEYRRNDP+GF RD RLV
Sbjct:  424 MEDDLSLVFHDPVDLDAYPSYEEKVDEPMDLGTIKGKLDNWEYRRNDPMGFLRDGRLV 481          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A7R9W4F0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4F0_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.340e-8
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    4 EDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            ED  S +F EPV    +P Y E +D+PMD GTI+ K+DN +Y+   P  F RD+R V
Sbjct:   41 EDSYSGIFQEPVSTTDFPDYEEYIDQPMDLGTIRTKVDNRKYQ--SPEQFARDVRKV 95          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A1E7EUY5_9STRA (Bromodomain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUY5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.650e-8
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   22 VFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            +F EPV  D +P Y E+V  PMD+GT+K KLDN EYR    +   +D RLV
Sbjct:    1 IFSEPVPRDDFPEYYEQVKTPMDYGTMKKKLDNGEYRSGQAM--QKDFRLV 49          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: E1ZPU3_CHLVA (Bromo domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZPU3_CHLVA)

HSP 1 Score: 53.9 bits (128), Expect = 4.770e-8
Identity = 28/50 (56.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            F+ PVDL  YP YAE V  PMDFGTIK ++D   YR  D   F  D+RLV
Sbjct:    4 FNAPVDLRQYPDYAETVSRPMDFGTIKRRIDVGLYRHPDE--FLSDVRLV 51          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A8J6ELY2_ELECQ (Uncharacterized protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6ELY2_ELECQ)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:   25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            F +PV+  +YP Y + +D PMDF T+KAKL+  EY  +DPL F +D+RL+
Sbjct: 1323 FRQPVNSVSYPDYQDIIDNPMDFSTVKAKLEAGEY--SDPLEFGQDVRLI 1370          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A2P6THZ3_CHLSO (Alkaline phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THZ3_CHLSO)

HSP 1 Score: 54.7 bits (130), Expect = 3.400e-7
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:   25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            F+ PVDL  YP YAE +  PMDFGTIK ++D   YR  D   F  D+RLV
Sbjct:  170 FNAPVDLKQYPDYAEAIKTPMDFGTIKRRIDQGGYRHPDE--FLADVRLV 217          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A0L0HH39_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HH39_SPIPD)

HSP 1 Score: 52.4 bits (124), Expect = 2.220e-6
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   16 SVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            S VF EPVDL+ +P Y + VD+PMDFGTI AKLD+  Y +     F +D+ LV
Sbjct:  551 SDVFAEPVDLERFPQYLDFVDQPMDFGTIGAKLDDNCYTKIQD--FVKDVLLV 601          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A7S3P5L3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P5L3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.240e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
Query:   25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYR 132
            F EPV  D +P Y EKV +PMD+GT+KAKL+N EYR
Sbjct: 2244 FSEPVPKDEFPDYYEKVKQPMDYGTMKAKLENKEYR 2279          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: A0A6P4YCD1_BRABE (peregrin-like isoform X1 n=38 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YCD1_BRABE)

HSP 1 Score: 51.6 bits (122), Expect = 4.170e-6
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query:    4 EDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLGFTRDMRLV 174
            E D   +F EPV LD  P Y E + EPMDF T++ K++  +YR  D   F RD  L+
Sbjct:  646 EKDAGKIFSEPVPLDEVPDYLEYIKEPMDFATMRTKVEGHQYRSLDD--FERDFELI 700          
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Match: UPI00067BDC41 (bromodomain adjacent to zinc finger domain protein 1A n=1 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067BDC41)

HSP 1 Score: 51.6 bits (122), Expect = 4.180e-6
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:   25 FHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPL 147
            F+EPVD+DA P Y E + EPMDF T+K KL+  EYR +  L
Sbjct: 1342 FYEPVDVDAVPDYLEVISEPMDFTTMKQKLEGGEYRSDGEL 1382          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21469.5652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G873_ECTSI1.060e-2686.21Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
A0A7R9W4F0_9STRA2.340e-847.37Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A1E7EUY5_9STRA2.650e-850.98Bromodomain-containing protein (Fragment) n=1 Tax=... [more]
E1ZPU3_CHLVA4.770e-856.00Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A8J6ELY2_ELECQ2.490e-750.00Uncharacterized protein n=2 Tax=Eleutherodactylus ... [more]
A0A2P6THZ3_CHLSO3.400e-754.00Alkaline phosphatase n=1 Tax=Chlorella sorokiniana... [more]
A0A0L0HH39_SPIPD2.220e-652.83Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A7S3P5L3_9STRA2.240e-663.89Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6P4YCD1_BRABE4.170e-643.86peregrin-like isoform X1 n=38 Tax=Branchiostoma Ta... [more]
UPI00067BDC414.180e-656.10bromodomain adjacent to zinc finger domain protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21469contigH-paniculata_contig21469:2831..3004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.4e-22
Seed eggNOG ortholog2880.D7G873
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SET domain
EggNOG OGsCOG0553@1,COG2940@1,COG5076@1,KOG0383@2759,KOG0384@2759,KOG1075@1,KOG1075@2759,KOG1081@2759,KOG1474@2759
EC2.1.1.43,2.3.1.15,3.6.4.12
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.2432418-CDS-H-paniculata_contig21469:2830..30041622929579.2432418-CDS-H-paniculata_contig21469:2830..3004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21469 2831..3004 +
1691480922.2450655-CDS-H-paniculata_contig21469:2830..30041691480922.2450655-CDS-H-paniculata_contig21469:2830..3004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21469 2831..3004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21469.5652.1prot_H-paniculata_contig21469.5652.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21469 2831..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21469.5652.1

>prot_H-paniculata_contig21469.5652.1 ID=prot_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MEDDLSVVFHEPVDLDAYPSYAEKVDEPMDFGTIKAKLDNWEYRRNDPLG
FTRDMRLV
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mRNA from alignment at H-paniculata_contig21469:2831..3004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21469.5652.1 ID=mRNA_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at H-paniculata_contig21469:2831..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGATGACCTTTCCGTGGTTTTCCACGAGCCGGTGGATCTTGACGC CTATCCCTCCTACGCGGAGAAGGTCGACGAGCCTATGGATTTCGGTACGA TCAAGGCCAAGCTGGACAACTGGGAGTACAGGAGGAATGACCCTCTGGGC TTCACGAGAGACATGCGGCTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig21469:2831..3004+

>mRNA_H-paniculata_contig21469.5652.1 ID=mRNA_H-paniculata_contig21469.5652.1|Name=mRNA_H-paniculata_contig21469.5652.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig21469:2831..3004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGATGACCTTTCCGTGGTTTTCCACGAGCCGGTGGATCTTGACGC
CTATCCCTCCTACGCGGAGAAGGTCGACGAGCCTATGGATTTCGGTACGA
TCAAGGCCAAGCTGGACAACTGGGAGTACAGGAGGAATGACCCTCTGGGC
TTCACGAGAGACATGCGGCTGGTGATGGAAGATGACCTTTCCGTGGTTTT
CCACGAGCCGGTGGATCTTGACGCCTATCCCTCCTACGCGGAGAAGGTCG
ACGAGCCTATGGATTTCGGTACGATCAAGGCCAAGCTGGACAACTGGGAG
TACAGGAGGAATGACCCTCTGGGCTTCACGAGAGACATGCGGCTGGTG
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