mRNA_H-paniculata_contig21466.5650.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21466.5650.1
Unique NamemRNA_H-paniculata_contig21466.5650.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21466.5650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21466contigH-paniculata_contig21466:2937..3881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size947
Cds size642
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.1215813-UTR-H-paniculata_contig21466:2936..32391622929579.1215813-UTR-H-paniculata_contig21466:2936..3239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 2937..3239 +
1691480922.1969867-UTR-H-paniculata_contig21466:2936..32391691480922.1969867-UTR-H-paniculata_contig21466:2936..3239Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21466 2937..3239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929579.13392-CDS-H-paniculata_contig21466:3239..38811622929579.13392-CDS-H-paniculata_contig21466:3239..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 3240..3881 +
1691480922.2080712-CDS-H-paniculata_contig21466:3239..38811691480922.2080712-CDS-H-paniculata_contig21466:3239..3881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21466 3240..3881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21466.5650.1prot_H-paniculata_contig21466.5650.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21466 3240..3881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21466.5650.1

>prot_H-paniculata_contig21466.5650.1 ID=prot_H-paniculata_contig21466.5650.1|Name=mRNA_H-paniculata_contig21466.5650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MTGIAGSGDQEPDWKAFYEEMQEKERGRHEQTLGEQILQALKQDDGTPHS
SELYARSGTSFRLPPIFSGLPDDHFVHTRSFLTYCSGLKSRDQLYGERVE
VGKKTEEELREKFSEAYINKAHHAFQALIKSVAKCKQPQCAMVIDVSPSG
AWSIFEDWFRDTTSGERIRVRGEFENLAVQQNETPNECLARSFVIVERMK
EIGVDMTETEVHHQ
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mRNA from alignment at H-paniculata_contig21466:2937..3881+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21466.5650.1 ID=mRNA_H-paniculata_contig21466.5650.1|Name=mRNA_H-paniculata_contig21466.5650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig21466:2937..3881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGGGTATGATCGATAAAGCGACGGTTACGTGATTATTCGGTTACATG
GAGTTCATATATGGTCGGCATGTTTGGTTGAACTGGATCTGCAAGAGTCA
GGACGGTGCGCATACGTGCCACCGTCCTTTAATCACTACACTTTTCTACA
CTTTCCTCCCCCATTTTACATCTCCACCTCCACGCCCGAATGGCTGTGCT
TTACGCCTAGACACGAAGACCCAAACGCCCTTAAACATATGATAACGCTA
GCGTTATTAGTCATAGCTTTGAGGACGGGTAAAGTGTAGGCAAATTAATA
GCTATGACGGGGATAGCGGGGAGTGGAGACCAAGAGCCCGACTGGAAGGC
TTTCTACGAGGAGATGCAAGAAAAAGAACGGGGACGACATGAGCAAACTT
TGGGCGAGCAGATCCTGCAGGCCCTCAAGCAAGACGACGGTACGCCGCAC
TCATCAGAGCTATATGCTCGGTCAGGCACGTCGTTCAGACTTCCCCCTAT
TTTCTCTGGTTTACCTGATGACCACTTTGTGCATACTAGATCTTTCCTCA
CGTACTGCTCTGGCTTGAAAAGTCGTGACCAACTGTACGGAGAAAGAGTA
GAAGTAGGTAAAAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCTGAGGC
CTATATTAACAAGGCACATCACGCATTTCAAGCACTCATCAAGTCAGTTG
CAAAGTGTAAGCAACCGCAATGTGCAATGGTAATCGATGTCTCGCCATCT
GGAGCGTGGAGTATCTTTGAAGACTGGTTCAGAGACACAACATCTGGAGA
GCGTATTAGAGTTCGTGGAGAATTTGAGAACTTGGCAGTACAACAAAATG
AGACACCAAATGAATGTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATG
AAGGAGATTGGTGTTGACATGACAGAGACAGAAGTTCACCATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21466:2937..3881+

>mRNA_H-paniculata_contig21466.5650.1 ID=mRNA_H-paniculata_contig21466.5650.1|Name=mRNA_H-paniculata_contig21466.5650.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig21466:2937..3881+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGGATAGCGGGGAGTGGAGACCAAGAGCCCGACTGGAAGGCTTT
CTACGAGGAGATGCAAGAAAAAGAACGGGGACGACATGAGCAAACTTTGG
GCGAGCAGATCCTGCAGGCCCTCAAGCAAGACGACGGTACGCCGCACTCA
TCAGAGCTATATGCTCGGTCAGGCACGTCGTTCAGACTTCCCCCTATTTT
CTCTGGTTTACCTGATGACCACTTTGTGCATACTAGATCTTTCCTCACGT
ACTGCTCTGGCTTGAAAAGTCGTGACCAACTGTACGGAGAAAGAGTAGAA
GTAGGTAAAAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCTGAGGCCTA
TATTAACAAGGCACATCACGCATTTCAAGCACTCATCAAGTCAGTTGCAA
AGTGTAAGCAACCGCAATGTGCAATGGTAATCGATGTCTCGCCATCTGGA
GCGTGGAGTATCTTTGAAGACTGGTTCAGAGACACAACATCTGGAGAGCG
TATTAGAGTTCGTGGAGAATTTGAGAACTTGGCAGTACAACAAAATGAGA
CACCAAATGAATGTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATGAAG
GAGATTGGTGTTGACATGACAGAGACAGAAGTTCACCATCAGATGACGGG
GATAGCGGGGAGTGGAGACCAAGAGCCCGACTGGAAGGCTTTCTACGAGG
AGATGCAAGAAAAAGAACGGGGACGACATGAGCAAACTTTGGGCGAGCAG
ATCCTGCAGGCCCTCAAGCAAGACGACGGTACGCCGCACTCATCAGAGCT
ATATGCTCGGTCAGGCACGTCGTTCAGACTTCCCCCTATTTTCTCTGGTT
TACCTGATGACCACTTTGTGCATACTAGATCTTTCCTCACGTACTGCTCT
GGCTTGAAAAGTCGTGACCAACTGTACGGAGAAAGAGTAGAAGTAGGTAA
AAAGACTGAGGAAGAATTGCGTGAGAAGTTTTCTGAGGCCTATATTAACA
AGGCACATCACGCATTTCAAGCACTCATCAAGTCAGTTGCAAAGTGTAAG
CAACCGCAATGTGCAATGGTAATCGATGTCTCGCCATCTGGAGCGTGGAG
TATCTTTGAAGACTGGTTCAGAGACACAACATCTGGAGAGCGTATTAGAG
TTCGTGGAGAATTTGAGAACTTGGCAGTACAACAAAATGAGACACCAAAT
GAATGTCTGGCTAGGTCTTTTGTCATTGTAGAGCGGATGAAGGAGATTGG
TGTTGACATGACAGAGACAGAAGTTCACCATCAG
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