mRNA_H-paniculata_contig2145.5645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2145.5645.1
Unique NamemRNA_H-paniculata_contig2145.5645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: D7FHH9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH9_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 3.350e-78
Identity = 124/133 (93.23%), Postives = 129/133 (96.99%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAKAM 714
            MSVMI+TSLGEVVVDLFC++APLAAKNFLKLCK+KYYNGCLFYNVQQNFMIQ GDPTATGKGGTSVYGL+YGEQARFFEDEI  TSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK M
Sbjct:   12 MSVMIETSLGEVVVDLFCEDAPLAAKNFLKLCKIKYYNGCLFYNVQQNFMIQAGDPTATGKGGTSVYGLMYGEQARFFEDEISATSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAKVM 144
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A6H5JBH5_9PHAE (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH5_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 9.380e-72
Identity = 118/133 (88.72%), Postives = 124/133 (93.23%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAKAM 714
            MSVMI+TSLGEVVVDLFC++APLAAKNFLKLCK+KYYNGCLFYNVQQNFM+QTGDPTATGKGGTSVYGL+YGEQAR        TSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK M
Sbjct:    1 MSVMIETSLGEVVVDLFCEDAPLAAKNFLKLCKIKYYNGCLFYNVQQNFMVQTGDPTATGKGGTSVYGLMYGEQAR-------ATSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAKVM 126
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BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A836CGJ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ7_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.980e-61
Identity = 101/129 (78.29%), Postives = 114/129 (88.37%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVF 702
            MSVM++TSLG +VVDLFCDEAPLA KNFLKLCK+KYYNGCLFYNVQQNFM Q+GDPTATGKGGTSVYGL+YGEQARFF DE+ PT RKHD  GLL MANMG P++NGS    ++RGDD+ HLDGKHT+F
Sbjct:    1 MSVMLETSLGSIVVDLFCDEAPLACKNFLKLCKIKYYNGCLFYNVQQNFMAQSGDPTATGKGGTSVYGLMYGEQARFFNDEVHPT-RKHDAKGLLCMANMGAPHTNGSHD--TLRGDDLTHLDGKHTIF 126
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: W7U8L5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U8L5_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.090e-52
Identity = 88/131 (67.18%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            MSVM++T+LGE+VVDL+CD+ PLAAKNFLKLCK KYYN  L YNVQQNFMIQTGDP+ TG+GGTS+YG+LYGEQA++FEDEI+    KH   GL+ MA+ G  N N SQF+ +MRG+DM+ LDGKHT+F +
Sbjct:    1 MSVMLETTLGELVVDLYCDKCPLAAKNFLKLCKTKYYNDVLVYNVQQNFMIQTGDPSGTGRGGTSIYGMLYGEQAKYFEDEIRLPQLKHSRPGLVCMASSGE-NQNTSQFYITMRGEDMEFLDGKHTIFGE 130
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BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A8K1FD03_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FD03_PYTOL)

HSP 1 Score: 186 bits (473), Expect = 1.390e-51
Identity = 84/131 (64.12%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            MSV+++T+LGE+VVDL+ D  PLA +NFLKLCK KYYN  LF+NVQ+NFM+Q GDPT TGKGG S+YG LYGEQARFF+DE++P   KH++ GLL MAN G PN+NGSQF+ + R +D+++LDGKHT+F +
Sbjct:    1 MSVLVETTLGELVVDLYVDACPLATRNFLKLCKTKYYNNVLFFNVQENFMVQAGDPTGTGKGGMSIYGQLYGEQARFFDDEVRP-QLKHNKKGLLGMANTG-PNTNGSQFYITTRAEDLEYLDGKHTIFGE 129
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A3R7J9B4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9B4_9STRA)

HSP 1 Score: 175 bits (444), Expect = 3.990e-47
Identity = 82/133 (61.65%), Postives = 103/133 (77.44%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEI-QPTSRKH-DEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            MSV+++T+LG +V+DLF DE PLA  NFLKLCK KYY+GCLF+NVQ+NFM Q GDPTATG GG S+YG LYG QARFFEDE+ +P  R H D +GLL MA+ G  N N SQF+ + R +DM +LD +HT+F +
Sbjct:    1 MSVLVETTLGALVLDLFVDECPLACTNFLKLCKTKYYHGCLFFNVQENFMAQAGDPTATGAGGDSIYGALYGAQARFFEDELPKPRGRSHEDRSGLLGMASSGSTNQNASQFYLTTRTEDMAYLDEQHTIFGE 133
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A087SRQ0_AUXPR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SRQ0_AUXPR)

HSP 1 Score: 175 bits (443), Expect = 6.110e-47
Identity = 82/131 (62.60%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            MSV+++TS G++V+D+F DE P AA NFLKLCK+KYYN CLFYNVQ+NF+ QTGDPT TGKGG SVYG+LYGEQARFFEDEI+P + KH + G++ MA++G P++N SQF+ +  G+++Q LD KHT+F +
Sbjct:    1 MSVILETSKGDIVIDVFVDECPKAATNFLKLCKIKYYNNCLFYNVQRNFIAQTGDPTNTGKGGESVYGVLYGEQARFFEDEIRP-ALKHKKKGMVGMASVG-PDANASQFYITT-GEELQSLDEKHTIFGE 128
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A3M6VRY9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VRY9_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.450e-47
Identity = 84/133 (63.16%), Postives = 105/133 (78.95%), Query Frame = 1 
Query:  316 MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEI-QPTSRKH-DEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            MSV+++T+LG +V+DL+ DE PLA  NFLKLCK KYY+GCLF+NVQ+NFM+QTGDPTATG GG S+YG LYG QARFFEDE+ QP  R H D  GLL MA+ G+ N NGSQ + + R DDM +LD +HT+F +
Sbjct:    1 MSVLVETTLGALVLDLYVDECPLACTNFLKLCKTKYYHGCLFFNVQENFMVQTGDPTATGNGGDSIYGHLYGAQARFFEDELPQPIRRSHEDRKGLLGMAS-GLANQNGSQVYLTTRADDMAYLDEQHTIFGE 132
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A7S3TJV1_EMIHU (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TJV1_EMIHU)

HSP 1 Score: 171 bits (433), Expect = 3.080e-46
Identity = 79/132 (59.85%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:  313 PMSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            PMSV+++TS+G++V+DL  +EAP+A K+FLKLCK+KYYN CLF+NVQ   +IQTGDPT +G GG+S+YGLLYG+QARFFEDE +  S +HD AG++SMA+ G PN+NGSQFF ++     +HLD K+T+F +
Sbjct:   19 PMSVLLETSVGDIVIDLRTEEAPIACKSFLKLCKVKYYNHCLFHNVQAGALIQTGDPTGSGTGGSSLYGLLYGDQARFFEDEFR-RSLRHDRAGVVSMASSG-PNTNGSQFFITVGDHAQEHLDDKYTIFGE 148
[Close]
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Match: A0A7S3TL92_EMIHU (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TL92_EMIHU)

HSP 1 Score: 171 bits (433), Expect = 6.610e-46
Identity = 79/132 (59.85%), Postives = 108/132 (81.82%), Query Frame = 1 
Query:  313 PMSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFMIQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANMGVPNSNGSQFFFSMRGDDMQHLDGKHTVFAK 708
            PMSV+++TS+G++V+DL  +EAP+A K+FLKLCK+KYYN CLF+NVQ   +IQTGDPT +G GG+S+YGLLYG+QARFFEDE +  S +HD AG++SMA+ G PN+NGSQFF ++     +HLD K+T+F +
Sbjct:   19 PMSVLLETSVGDIVIDLRTEEAPIACKSFLKLCKVKYYNHCLFHNVQAGALIQTGDPTGSGTGGSSLYGLLYGDQARFFEDEFR-RSLRHDRAGVVSMASSG-PNTNGSQFFITVGDHAQEHLDDKYTIFGE 148
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2145.5645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHH9_ECTSI3.350e-7893.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5JBH5_9PHAE9.380e-7288.72Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A836CGJ7_9STRA3.980e-6178.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
W7U8L5_9STRA4.090e-5267.18Peptidyl-prolyl cis-trans isomerase n=2 Tax=Monodo... [more]
A0A8K1FD03_PYTOL1.390e-5164.12Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7J9B4_9STRA3.990e-4761.65Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytop... [more]
A0A087SRQ0_AUXPR6.110e-4762.60Peptidyl-prolyl cis-trans isomerase n=1 Tax=Auxeno... [more]
A0A3M6VRY9_9STRA8.450e-4763.16Peptidyl-prolyl cis-trans isomerase n=1 Tax=Perono... [more]
A0A7S3TJV1_EMIHU3.080e-4659.85Peptidyl-prolyl cis-trans isomerase n=1 Tax=Emilia... [more]
A0A7S3TL92_EMIHU6.610e-4659.85Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2145contigH-paniculata_contig2145:665..6887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score260.8
Seed ortholog evalue3.9e-67
Seed eggNOG ortholog2880.D7FHH9
Preferred namePPIL4
KEGG koko:K03061,ko:K05012,ko:K09517,ko:K12735,ko:K12737
KEGG TC2.A.49.1.1,2.A.49.1.2,2.A.49.1.3,2.A.49.2.2,2.A.49.2.3,2.A.49.2.8
KEGG Pathwayko03050,ko04141,ko05169,map03050,map04141,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000414,GO:0000416,GO:0000502,GO:0000785,GO:0000790,GO:0000993,GO:0001098,GO:0001099,GO:0001932,GO:0001934,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005737,GO:0005829,GO:0005838,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0008540,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009791,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010470,GO:0010498,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010638,GO:0010720,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016859,GO:0016887,GO:0017025,GO:0017111,GO:0018130,GO:0018193,GO:0018208,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019941,GO:0022603,GO:0022624,GO:0030162,GO:0030163,GO:0030433,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031334,GO:0031399,GO:0031401,GO:0031595,GO:0031597,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032991,GO:0033043,GO:0033044,GO:0033120,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034976,GO:0035327,GO:0036211,GO:0036402,GO:0036503,GO:0040008,GO:0040019,GO:0040026,GO:0040028,GO:0042176,GO:0042221,GO:0042325,GO:0042327,GO:0042623,GO:0043161,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0043412,GO:0043484,GO:0043632,GO:0043900,GO:0043902,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045595,GO:0045597,GO:0045732,GO:0045862,GO:0045893,GO:0045898,GO:0045899,GO:0045927,GO:0045935,GO:0045937,GO:0045944,GO:0045995,GO:0046483,GO:0048518,GO:0048522,GO:0048580,GO:0048582,GO:0048638,GO:0048639,GO:0048856,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051569,GO:0051571,GO:0051603,GO:0051716,GO:0060255,GO:0060260,GO:0060261,GO:0060281,GO:0060282,GO:0060284,GO:0061062,GO:0061063,GO:0061136,GO:0065007,GO:0070013,GO:0070063,GO:0071012,GO:0071013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901407,GO:1901409,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901800,GO:1902275,GO:1902494,GO:1902680,GO:1903050,GO:1903052,GO:1903311,GO:1903313,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1905269,GO:1905368,GO:1905369,GO:1905435,GO:1905437,GO:1905471,GO:1905473,GO:1905879,GO:1905881,GO:1990904,GO:2000026,GO:2000112,GO:2000142,GO:2000144,GO:2000241,GO:2000243,GO:2000543,GO:2001141,GO:2001160,GO:2001162,GO:2001163,GO:2001165,GO:2001252,GO:2001253,GO:2001255
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0415@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03051,ko03110,ko04040
Exons5
Model size1226
Cds size441
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.225058-UTR-H-paniculata_contig2145:664..11341622929578.225058-UTR-H-paniculata_contig2145:664..1134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 665..1134 -
1691480921.7485943-UTR-H-paniculata_contig2145:664..11341691480921.7485943-UTR-H-paniculata_contig2145:664..1134Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 665..1134 -
1622929578.3769758-UTR-H-paniculata_contig2145:4746..47941622929578.3769758-UTR-H-paniculata_contig2145:4746..4794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 4747..4794 -
1691480921.7987437-UTR-H-paniculata_contig2145:4746..47941691480921.7987437-UTR-H-paniculata_contig2145:4746..4794Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 4747..4794 -
1622929578.3892014-UTR-H-paniculata_contig2145:6620..68871622929578.3892014-UTR-H-paniculata_contig2145:6620..6887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 6621..6887 -
1691480921.8065622-UTR-H-paniculata_contig2145:6620..68871691480921.8065622-UTR-H-paniculata_contig2145:6620..6887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2145 6621..6887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.2341886-CDS-H-paniculata_contig2145:1134..11821622929578.2341886-CDS-H-paniculata_contig2145:1134..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 1135..1182 -
1691480921.759879-CDS-H-paniculata_contig2145:1134..11821691480921.759879-CDS-H-paniculata_contig2145:1134..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 1135..1182 -
1622929578.2474277-CDS-H-paniculata_contig2145:1889..20551622929578.2474277-CDS-H-paniculata_contig2145:1889..2055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 1890..2055 -
1691480921.7698214-CDS-H-paniculata_contig2145:1889..20551691480921.7698214-CDS-H-paniculata_contig2145:1889..2055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 1890..2055 -
1622929578.2643068-CDS-H-paniculata_contig2145:3529..36521622929578.2643068-CDS-H-paniculata_contig2145:3529..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 3530..3652 -
1691480921.7789912-CDS-H-paniculata_contig2145:3529..36521691480921.7789912-CDS-H-paniculata_contig2145:3529..3652Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 3530..3652 -
1622929578.3512259-CDS-H-paniculata_contig2145:4642..47461622929578.3512259-CDS-H-paniculata_contig2145:4642..4746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 4643..4746 -
1691480921.7886598-CDS-H-paniculata_contig2145:4642..47461691480921.7886598-CDS-H-paniculata_contig2145:4642..4746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2145 4643..4746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2145.5645.1prot_H-paniculata_contig2145.5645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2145 1135..4746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2145.5645.1

>prot_H-paniculata_contig2145.5645.1 ID=prot_H-paniculata_contig2145.5645.1|Name=mRNA_H-paniculata_contig2145.5645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MSVMIDTSLGEVVVDLFCDEAPLAAKNFLKLCKLKYYNGCLFYNVQQNFM
IQTGDPTATGKGGTSVYGLLYGEQARFFEDEIQPTSRKHDEAGLLSMANM
GVPNSNGSQFFFSMRGDDMQHLDGKHTVFAKAMLLDFGVLRSTVVE*
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mRNA from alignment at H-paniculata_contig2145:665..6887-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2145.5645.1 ID=mRNA_H-paniculata_contig2145.5645.1|Name=mRNA_H-paniculata_contig2145.5645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6223bp|location=Sequence derived from alignment at H-paniculata_contig2145:665..6887- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTCATATTCTCATTTCTCTGTAGCTTGAGCCTCTCTTCATTGTGTGC
CGTATATTGGAGAGTGGAGACGTACCAGTTCGAAATCAGCAGACGAGAAC
AGGGGAAGGAGGAGGAAGAGGGGAGGAGGGAACAGAGATTTTTAATCTTC
GCAGTTAAAACTGCTGCAATTGTAGTACAGCAGTAAATACTTTGCTGCCG
TTGTGTTGCTGCCGCTACTCCCGTCAGACAAGACAAGGATCGATCCAGCC
GCTTTCTACCCCAAGAGGTATTAATGAAATTGGAGAGGACCCAACAATAT
CAAAACAGCTTGCCCCACCTTCACCGCGCGTTTACTGCAGTTCTATAAGT
GACCGTACCAGGTCAGCATACATGTACCTCGTGCAACCTTATTTGGGGAG
GTTGAGATAACTGGAGGGGGGAGGGAGGGCGTTTTGCACTGGACTTTTCA
ACTCACAGTTTCAAACATCCAACAACCGTTACGCGGCACAACGTTAACAC
GAACCGCAACCAGCAAAGACAACTGCTGGGCGAATCAACCATGTGGTTCT
GATGATGACATAAGAGACCTCATAGCTGGAATCTAAAATCTAATGATATA
GTACGAAGTAACATAGGCACGCCGACAATTTACCGTTGCGGTGGGGCACC
AGAATGAATCCAGTTCACGTTAGAAAAACCGCACATTCTGTGCGCATGGT
CTGCCTCTGTGTCCACGTTTAACCAGGTAGTAGACCCGTCATCCACGGTA
CAGGGTAGCCGCCCGTAGAGTGTGATCGGTTGCCATCATACCGCCTGAAT
GGTCGAGGCCGTCGCGTGTGTCATGGTTGTGAGCCTTATTCCGATATTAT
GATGGTGGTCGTGGTAGTTTATGTTCCAGATTAGTTTTTGCATTCTATAA
TCGAGTAAATTATAACACAAGAATTTTCTTGGGAACGCAGCGAGGCGTGG
AGATTAGGTCGAGGACCAAAAAATGGACTGCATGGGCCTACTCGTGATCA
TACTCTACTGATGTATATTTTGGATTGATGACCGAGAGAAGGCGGCTTCT
TTGCATTTTTAAACATATCAGGGAGCAAACGGTTGGTGGTACAAGATTAT
GTGCCTCTTGGCTCGAGAAATCCGACAGGTTGGAACATGTCAAACGGTCA
CAGGTTACCTATTCCCGATTATCACTTGAGGGAAGTACGACGGCCTCCCA
AAGCGCGGGTGCGTTCTCCTCATGGCCTGCACTTGTGAAGATCCTCAACA
TCAGTCTCAGTCTGCATTTCCTTATCTTGACAAAGCAAGAGGAGCAATAT
ATATATCCTCACTATTTCCAAGTTACGGTCCACTCCCCTAGGGTTTGACT
GTTTCTTACATTTCCCAGAAAACCTCCCGCTTGTTTTCCTGATTTGCTAC
AATCGCAATTCTTACGAGCAGGGCGATGCTATCTGTAATGTTGGTACATA
CCCAGCGTTTCTCAGAGCGGCTGCTCCGTGGTCTGCGAGAATAGCTCTGC
ATGAGTCATCACCAAAAATGCGCAGTTGCTCCAGGCCAGGGCTAAACTAC
AGTTCACACGCTTTCTATGATACCAATTGATCATTCTGAAACGACCAAAT
TAAAACGGCCAGCCATGCAGCCACACAGAACATGTAATCCAATCGCCACC
ACAGAGTATAGATCCCAGGCGACTAACCAGTTCCAGCACGGGGTGCGACT
TCCGTTCGTGCTGCCTCGATCACGTCGACGCAAAGATGCGCACGCGTTTG
GACACTGTTGTCACCCGACGATGAGGCCCGTATTCGATTTCCGGAGAATA
GAGAAACGAGGCCAACAAATCTATTTGCTAGTCGTGGGCTTCTCGTTCCT
CAGTCCCTTGCCGTATGCATTCTCACCATATCCCCCGATATTTTCAGCAT
TACTAGAATATCGATAAGAGCTTCCGGTCAACGCTTATGATACCTGAATA
CATCCCTCAATTTTGTCGTTTGTCATGGGGCGAAGTTTGCAACCTCTCTA
TTAAAAAGCATCCTTACCCCCCCCCCCCCCCCTTAATCTCGTGCTCCCTC
CCCCCCCTCCCCCCCCTCGGCCGACGTGCGTCCCCAGCAAAAGCCCTGGC
CGGTGCGTTCCGTTGAAATTGAAGTGTAACGCTTTAGTCCGATGTCGGTG
ATGATCGACACGTCATTGGGGGAAGTGGTGGTTGATCTATTCTGCGACGA
AGCGCCGTTAGCCGCGAAGAACTTCCTCAAGCTGTGCAAGCTCAAGTGAG
TCTCGCCGCAGCCTTCTTCCTTCCGTTGCCGCCATTGATAGTACAGTGGC
ATTAGCAATAACAATCGGAATCCTTTGTTGGTACCTACTCCGACGATGGT
GTCACTTCAGAGTAGTTTAGTGTGTATTTTCACCGTAATAAAGAGAAAAG
TTGTGGTTTACTGTAATAGGTGCTAATAGAAGCGACACAAGGTCGCTGCT
TTGGGTATCTCTGACACCAACGGCGTTGTGCTCTCCGATTATTCTCTTCC
TTGTTTTCATCATGACATAATTATACATTCCTTTGTGCTGGTGCTTTCAA
CGTCGGTACAGCCTGCTGTACGCCGGTTTAGAAAGCAGAACAGAGGGGGG
GGAGGGGGATTTCCTCCTGTAGAGAAATGTCGAGCGAGCACGAGCGACAG
AAGAAGGATGCTAGTCTGCGCAGCACAGTAAACCGTGGCGATGTGAGAAA
AGAGACTATCTTGCGTTGTATTTATCGAGCGAGCATCTCTACCTCATGAC
AGATCTCTCTAAGATATCTTCCAACGGCACATCCATCCTAATCGTCATCA
CGGGTAGAGAGCATACACATAGTTGTCGAAAAAGTCGAATGTAACGAACA
AAAAAAACATCTCCAGGTGCCAGGGGGTAATATATGTCATCCTCCTTGAC
TATGATACACACGTCCAGTAGCACAAAATTTACCAAAACATGTTGCTGAT
GATAGATGAACAGATTCCGCCGTCGTCCAATGCCACTAACTTATACTGGT
AGTGCATGTGAACGATTTTTCGACACGGCTTGTTTGGACGGACAATTGCA
CGTGCAAAAAAAAAATGCGTGCTTGACGACCGACGATAGGTGTCGCCCCC
CTCATGAAGCTGTCCTTGACAATATATTCGTGTGTTGATATCGCCATGTT
ATATTAGTGGTCGAACCCTTGCTCTTGCATGAAGTGCACTATTGGTTGTC
TTGTAACCGCCCCCTTCTGTTGCCTTTTTTTGCAGGTACTACAATGGGTG
CCTGTTTTACAACGTGCAGCAAAATTTCATGATCCAAACGGGTGACCCCA
CCGCCACGGGTAAAGGAGGGACCTCTGTCTATGGCCTCCTGTACGGCGAG
CAAGCGCGGTGAGTCTCCGGCTCGAAACAGTGTTCAAGTTTCAAAATGAT
TGAATTTGTTTACGCGATAGGAAGTGCCTGGGATGTAGCTACAGTAGCTG
GCTGTTTGTTATCTGGGCGCACCACATATATCTATTGTGATGTTTCTGCT
GGACCCCGATTTGATTTACACAATATTTACTGATAAGTGTGTGCACAACT
GGAAATGGAGGTCAATCAACTGGATAATAACCTCAACAGGGTACGATGGA
AATATTTTATGAGTTTTACAGTACTACTAACCAAGCATATATCTTACAAT
CTTTATGATTTCACGCGTGTGACTTTCACAACTAGAATCGATAGATATTC
TAAAAGTTGTGGATATATTTTTCTCGCGATGGATTTATCAGAAGCTTCAC
TGGTATTGTGCATAAACGTTGACTATTGGCATTGCGTGAAGCATGATGTC
CCGTGAATTCAAACGACTCAGTAGGTTGATCAAGGCATTATATTCCTCAC
GTCATATGTTATGTGGGGGCAGTTTAGCCAAGGAGTAGTGAGGAAGGCGG
GCTTGTCCTGCCTGAGGGGATAGGCCTGGCTCGCTGGCTTTTTTTATTCT
CGGTCGATTGCTCACCTATCGTCGGATCTTCCATCGGCAGCTCGATCCTT
TCCATCCGTCTAGCAACCGTTGGGATCTGAAACCATTCTACTTGCGCGTG
CCGGGGGTATCCGCCCTTGCAGTCTGCGCTTTGCGCTCAACCTCCTCGCT
ACGCTCACAACAAATATAAGCAAGACGTCTGCCACGATTCGGTTTTAGAA
GCCGCCTGAGTACAACATTAAGAAATTGCATTCCCCGGAAGAGTACGAGT
AAATGGAGTATTTATCGGCGTTTTTTTTTTCTCAAGTATTTTCCCCTGAA
TTTCATTATGTGCGGGATGACATGGTGTATAGAATAAGGGGTTTGTTGAC
CCCCTTTTCAATATTACTTTTTATTATCACCCGGAGCAGTCGTAGACGAT
CCGGGAGGCACATATAATAATAATCGTGTTCATGCTGAACGTCCAGGCGA
TTTTTTTTTTTTTTTATAGCTTTTCGTCGCGAATGCTAGGAGTTTTATTC
GGAGTAAATTGTTGTTCCGAAAAATATACAACAGTGCTCAGCATCATCAC
CACCTAGCGCATTGACTCTTCAGGAACCGATATTGACACAAAAATCCCTT
ATTCTCATAATCTTCGACAGGACCACTCGGAATAGGGAGCAGGCGCCGCT
GTTCGTCAGATAGATTGACAGCAGACAGTACATACAGGACAGACGGGGAG
TTTAGTTGGTTGCCATGTACAATAGTGTATTCTTCCCGCACAATAACGAC
AGCAGCACCCGATGACTTGAATTTATATTGGCCATATTTCACCTTTTTTT
CTTCTTTTCTGAATCTACCATTCATCACGACCACAATCACAATCGAAACG
CCTGCTAATTAAAATGCGGCGCAATTGTGAAGGTTTTTCGAAGACGAGAT
CCAACCGACCAGTCGCAAGCACGACGAGGCAGGCCTTCTGTCGATGGCCA
ACATGGGCGTACCCAACTCCAACGGGTCTCAATTCTTCTTCTCCATGCGA
GGGGACGACATGCAGCACCTGGATGGGAAGCACACCGTGTTTGCTAAGGT
GCGCGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGAACGGCGGAGCGAT
TTTTCATTTTTGCCTCTTCTTTTTCTTTTTTCCCCTTTTCGTGTTTTTTT
TTTTTTTTTGGGACGTTTCCTGATATATATACACATATATACATATATGG
ATATGTATTATAATAGATACGTATACATATACATATACATATAGATGTAC
ATATATCGGTAAATACACTAAAACACTGACCATGTCATACTGTATGAACA
TGAAATATTTCCTCAACAAAGACCCAAAAAAGCTTTCGACGAACCGCAAG
TGTACGCCTAACAACACAATGGGTCAGGCCATAACAGGTAAAACGTCCGC
GAAGTGTTGGAAGATTTGAATGACCGACTAAAGGCAACGCTGTGAAGATA
GCTTGCAACGCTGCACGAGCAAGATGCTACCTTTTGTGGCGTTTTTTTAA
CGTTCTATTTCAGATAAAATTATTTTTAACTTTGCTTTTTGTCGTACACG
TGACGAAGCAGCAAGCCTCGTGTTTAAAGTCATCCCATCCGTGCATTTTA
CAAAAACGCAAGTACTGTAGTACGGCTTCCTTTGGTGTTCCCTCTCTGGG
CGATGGAGCCTTAGGGTTCGGGTAAAATGCAGGAGAAATAAAAGGACCTA
TCTCAGAACAGCCAACCGGGCGACCTCCGTTTTTCCGGTCAACGCTTGCT
GTCAGGCGATGCTATTGGACTTTGGTGTATTGCGTTCAACCGTAGTGGAG
TGAATGCGGTGCTGCGGGAAACGGCGTGGGTAATAGAAAGCATCGGAAAC
GCCTCCAAACAAGGACCATCATCGTCGCGAAAACACATGGATATAGAAGG
GGAAATTCTTCCCAGAAACGGTCATCATCGTCATTAAAACATTTGGATAT
AGTGTAAGCAACTGTTGCGAACAATGAATATCATCCTCACGGAAACACTT
GAAGAAAGAATGAGAAATTTGTTGCGAGAAACGACCATGGTAGTCACGAA
AACACTTGAATGCAGTACAGGGAACTGTTGAGATAAGTTCCCATCATTGC
CACGGAAACACTTGGATACAGTACAGGAAGCTGGTAAAAAAAATGATCAT
CACAAGAACACCTGGATACAGTATAGAAAACCGTTAGGAGAAACGACCAC
TGTCAATTCAAGGTATATTATTGAGCAAAGGATTTCACCCGCTGTCGCAC
GGGGATCCGCTGGCCCTAACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2145:665..6887-

>mRNA_H-paniculata_contig2145.5645.1 ID=mRNA_H-paniculata_contig2145.5645.1|Name=mRNA_H-paniculata_contig2145.5645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig2145:665..6887- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGTGATGATCGACACGTCATTGGGGGAAGTGGTGGTTGATCTATT
CTGCGACGAAGCGCCGTTAGCCGCGAAGAACTTCCTCAAGCTGTGCAAGC
TCAAATGTCGGTGATGATCGACACGTCATTGGGGGAAGTGGTGGTTGATC
TATTCTGCGACGAAGCGCCGTTAGCCGCGAAGAACTTCCTCAAGCTGTGC
AAGCTCAAGTACTACAATGGGTGCCTGTTTTACAACGTGCAGCAAAATTT
CATGATCCAAACGGGTGACCCCACCGCCACGGGTAAAGGAGGGACCTCTG
TCTATGGCCTCCTGTACGGCGAGCAAGCGCGGTACTACAATGGGTGCCTG
TTTTACAACGTGCAGCAAAATTTCATGATCCAAACGGGTGACCCCACCGC
CACGGGTAAAGGAGGGACCTCTGTCTATGGCCTCCTGTACGGCGAGCAAG
CGCGGTTTTTCGAAGACGAGATCCAACCGACCAGTCGCAAGCACGACGAG
GCAGGCCTTCTGTCGATGGCCAACATGGGCGTACCCAACTCCAACGGGTC
TCAATTCTTCTTCTCCATGCGAGGGGACGACATGCAGCACCTGGATGGGA
AGCACACCGTGTTTGCTAAGGTTTTTCGAAGACGAGATCCAACCGACCAG
TCGCAAGCACGACGAGGCAGGCCTTCTGTCGATGGCCAACATGGGCGTAC
CCAACTCCAACGGGTCTCAATTCTTCTTCTCCATGCGAGGGGACGACATG
CAGCACCTGGATGGGAAGCACACCGTGTTTGCTAAGGCGATGCTATTGGA
CTTTGGTGTATTGCGTTCAACCGTAGTGGAGTGAGCGATGCTATTGGACT
TTGGTGTATTGCGTTCAACCGTAGTGGAGTGA
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