mRNA_H-paniculata_contig21421.5637.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21421.5637.1
Unique NamemRNA_H-paniculata_contig21421.5637.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: A0A445EEE2_ARAHY (Uncharacterized protein n=2 Tax=Arachis hypogaea TaxID=3818 RepID=A0A445EEE2_ARAHY)

HSP 1 Score: 103 bits (257), Expect = 1.070e-23
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQ-RRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +WAEA+ +AVH LNR PT+   + TP E W G+ P + H   FGC AY     Q R+KLDD     +F+GY  DS ++++YNPE K V +SR++ FDE
Sbjct:  658 FWAEAVATAVHILNRCPTKSVRDKTPEEAWSGKRPSIHHFRVFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTDSKAYKLYNPETKKVIISRDVTFDE 755
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BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: L0P215_PHYED (PH01B019A14.9 protein n=2 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P215_PHYED)

HSP 1 Score: 103 bits (256), Expect = 1.480e-23
Identity = 43/97 (44.33%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            YW EA+ +AVH LNR+PT+  +  TP E WHG  P + HL  FGC A+V   +   KLDD +  GVF+GY E + ++R+ +P  + V+++R+++FDE
Sbjct:  830 YWGEAVMTAVHLLNRSPTKALDGKTPYEAWHGRKPAVSHLRVFGCLAFVKELNHVGKLDDRSTPGVFIGYTEGAKAYRVLDPTTRRVRITRDVVFDE 926
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BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: UPI000DECC56D (uncharacterized protein LOC112803219 n=1 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DECC56D)

HSP 1 Score: 100 bits (249), Expect = 1.220e-22
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQ-RRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +WAE + +AVH LNR PT+   + TP E W G+ P + H   FGC AY     Q R+KLDD     +F+GY  DS ++++YNP+ K V +SR++ FDE
Sbjct:  486 FWAEVVATAVHILNRCPTKSVRDKTPEEAWSGKRPSIHHFRVFGCIAYAHVPDQLRKKLDDKGEKCIFIGYSTDSKAYKLYNPKTKKVIISRDVTFDE 583
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BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: Q9AUM6_ORYSJ (Putative gag-pol polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q9AUM6_ORYSJ)

HSP 1 Score: 99.4 bits (246), Expect = 3.330e-22
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            YW EA+ +AVH LNR PT+  +  TP E WHG  P + HL  FGC A+    +   KLDD +  GVF+GY E   ++RI +P  + V++SR+++FDE
Sbjct:  994 YWEEAVMTAVHLLNRLPTKALDGKTPYEAWHGRKPVVSHLRVFGCLAFAKELNHVGKLDDRSSPGVFIGYAEGVKAYRILDPATQRVRISRDVVFDE 1090
[Close]
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: C7IZC8_ORYSJ (Os03g0680566 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7IZC8_ORYSJ)

HSP 1 Score: 99.4 bits (246), Expect = 3.330e-22
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            YW EA+ +AVH LNR PT+  +  TP E WHG  P + HL  FGC A+    +   KLDD +  GVF+GY E   ++RI +P  + V++SR+++FDE
Sbjct: 1076 YWEEAVMTAVHLLNRLPTKALDGKTPYEAWHGRKPVVSHLRVFGCLAFAKELNHVGKLDDRSSPGVFIGYAEGVKAYRILDPATQRVRISRDVVFDE 1172
[Close]
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: Q10F54_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10F54_ORYSJ)

HSP 1 Score: 99.4 bits (246), Expect = 3.350e-22
Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            YW EA+ +AVH LNR PT+  +  TP E WHG  P + HL  FGC A+    +   KLDD +  GVF+GY E   ++RI +P  + V++SR+++FDE
Sbjct: 1474 YWEEAVMTAVHLLNRLPTKALDGKTPYEAWHGRKPVVSHLRVFGCLAFAKELNHVGKLDDRSSPGVFIGYAEGVKAYRILDPATQRVRISRDVVFDE 1570
[Close]
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10RM4_ORYSJ)

HSP 1 Score: 97.4 bits (241), Expect = 1.570e-21
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVM-FQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +W EA+R AVH LNR PT+   + TP E W G  P+L HL  FGCTA+    Q   +KLDD +   V+LG +E S +HR+++P    + +SR+++F+E
Sbjct:  660 FWGEAVRHAVHLLNRLPTKAMGDRTPFEAWTGRKPQLGHLKVFGCTAHAKNTQPHLKKLDDRSAPYVYLGVEEGSKAHRLFDPRRGRIHVSRDVVFEE 757
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BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: A0A2K3JMR9_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JMR9_TRIPR)

HSP 1 Score: 90.1 bits (222), Expect = 1.330e-20
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMF-QSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +W EA+  A + LNR+PT    + TP E W G+ P + H   FGC AY+    + R+KLDD +   + LG  E+S ++++Y+P NK V +SR+++F+E
Sbjct:   15 FWPEALNWATYILNRSPTLSVKDMTPQEAWSGKKPNVQHFRVFGCLAYMHVPDNHRKKLDDKSLKCILLGISEESKAYKLYDPTNKKVIISRDVVFEE 112
[Close]
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: UPI000DEC3EF5 (uncharacterized protein LOC112729595 n=2 Tax=Arachis hypogaea TaxID=3818 RepID=UPI000DEC3EF5)

HSP 1 Score: 94.4 bits (233), Expect = 1.600e-20
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQ-RRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +WA A+ +AVH LNR PT+   + TP + W G+ P + H   FGC  Y     Q R+KLDD     +F+GY  DS ++++YNPE K V +S+++ FDE
Sbjct:  411 FWAGAVATAVHILNRCPTKSVRDKTPEKIWSGKRPFIHHFRIFGCITYAHVPDQLRKKLDDKGEKCIFIGYSTDSKAYKLYNPETKKVIISKDVTFDE 508
[Close]
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Match: A0A2K3K2Q6_TRIPR (Cysteine-rich receptor-like protein kinase 25-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K2Q6_TRIPR)

HSP 1 Score: 87.0 bits (214), Expect = 4.260e-20
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 YWAEAMRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYV-MFQSQRRKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE 291
            +W EA++ A + +N +PT    + TP E W G  P + H   FGC A+V +  SQR+KLDD +   V LG  E+S ++++Y+P  K + +SR++IF+E
Sbjct:   11 FWPEAVKWATYVMNMSPTLSVKDMTPEEAWSGRKPSVHHFKVFGCVAHVHIHDSQRKKLDDKSKKCVLLGVSEESKAYKLYDPIEKKIIISRDVIFEE 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21421.5637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445EEE2_ARAHY1.070e-2346.94Uncharacterized protein n=2 Tax=Arachis hypogaea T... [more]
L0P215_PHYED1.480e-2344.33PH01B019A14.9 protein n=2 Tax=Phyllostachys edulis... [more]
UPI000DECC56D1.220e-2244.90uncharacterized protein LOC112803219 n=1 Tax=Arach... [more]
Q9AUM6_ORYSJ3.330e-2245.36Putative gag-pol polyprotein n=1 Tax=Oryza sativa ... [more]
C7IZC8_ORYSJ3.330e-2245.36Os03g0680566 protein n=1 Tax=Oryza sativa subsp. j... [more]
Q10F54_ORYSJ3.350e-2245.36Retrotransposon protein, putative, Ty1-copia subcl... [more]
Q10RM4_ORYSJ1.570e-2143.88Retrotransposon protein, putative, unclassified n=... [more]
A0A2K3JMR9_TRIPR1.330e-2039.80Cysteine-rich receptor-like protein kinase 25-like... [more]
UPI000DEC3EF51.600e-2042.86uncharacterized protein LOC112729595 n=2 Tax=Arach... [more]
A0A2K3K2Q6_TRIPR4.260e-2039.80Cysteine-rich receptor-like protein kinase 25-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21421contigH-paniculata_contig21421:3822..4112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.718142-UTR-H-paniculata_contig21421:3821..38361622929577.718142-UTR-H-paniculata_contig21421:3821..3836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21421 3822..3836 +
1691480921.482473-UTR-H-paniculata_contig21421:3821..38361691480921.482473-UTR-H-paniculata_contig21421:3821..3836Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21421 3822..3836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.73126-CDS-H-paniculata_contig21421:3836..41121622929577.73126-CDS-H-paniculata_contig21421:3836..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21421 3837..4112 +
1691480921.498523-CDS-H-paniculata_contig21421:3836..41121691480921.498523-CDS-H-paniculata_contig21421:3836..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21421 3837..4112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21421.5637.1prot_H-paniculata_contig21421.5637.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21421 3837..4112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21421.5637.1

>prot_H-paniculata_contig21421.5637.1 ID=prot_H-paniculata_contig21421.5637.1|Name=mRNA_H-paniculata_contig21421.5637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MRSAVHCLNRAPTRLHNEGTPCEKWHGEIPKLDHLCAFGCTAYVMFQSQR
RKLDDTAWAGVFLGYDEDSSSHRIYNPENKSVQLSRNLIFDE
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mRNA from alignment at H-paniculata_contig21421:3822..4112+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21421.5637.1 ID=mRNA_H-paniculata_contig21421.5637.1|Name=mRNA_H-paniculata_contig21421.5637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig21421:3822..4112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGGGCGGAAGCGATGCGCTCGGCAGTGCACTGCCTAAATCGCGCCCC
GACGCGACTGCACAACGAAGGAACGCCGTGCGAAAAATGGCACGGCGAGA
TACCAAAGTTGGACCACCTTTGCGCCTTCGGCTGCACGGCGTATGTTATG
TTCCAGTCGCAGAGACGCAAACTCGACGACACAGCATGGGCGGGGGTGTT
TCTGGGGTACGACGAGGACAGCTCAAGTCATCGCATATATAACCCGGAAA
ACAAGAGCGTCCAGTTGAGCAGGAACCTGATATTTGACGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21421:3822..4112+

>mRNA_H-paniculata_contig21421.5637.1 ID=mRNA_H-paniculata_contig21421.5637.1|Name=mRNA_H-paniculata_contig21421.5637.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig21421:3822..4112+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCTCGGCAGTGCACTGCCTAAATCGCGCCCCGACGCGACTGCACAA
CGAAGGAACGCCGTGCGAAAAATGGCACGGCGAGATACCAAAGTTGGACC
ACCTTTGCGCCTTCGGCTGCACGGCGTATGTTATGTTCCAGTCGCAGAGA
CGCAAACTCGACGACACAGCATGGGCGGGGGTGTTTCTGGGGTACGACGA
GGACAGCTCAAGTCATCGCATATATAACCCGGAAAACAAGAGCGTCCAGT
TGAGCAGGAACCTGATATTTGACGAAATGCGCTCGGCAGTGCACTGCCTA
AATCGCGCCCCGACGCGACTGCACAACGAAGGAACGCCGTGCGAAAAATG
GCACGGCGAGATACCAAAGTTGGACCACCTTTGCGCCTTCGGCTGCACGG
CGTATGTTATGTTCCAGTCGCAGAGACGCAAACTCGACGACACAGCATGG
GCGGGGGTGTTTCTGGGGTACGACGAGGACAGCTCAAGTCATCGCATATA
TAACCCGGAAAACAAGAGCGTCCAGTTGAGCAGGAACCTGATATTTGACG
AA
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