mRNA_H-paniculata_contig21420.5636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21420.5636.1
Unique NamemRNA_H-paniculata_contig21420.5636.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: A0A8H6FZZ8_9LECA (Uncharacterized protein n=2 Tax=Letharia TaxID=112415 RepID=A0A8H6FZZ8_9LECA)

HSP 1 Score: 65.9 bits (159), Expect = 4.070e-11
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:   13 VIVDGPTELGCYTDSPTDRLFERVVVDDALTPEGCESTCAGYKYFGLQYRNECWCGDNDNFA 198
            V V G T  GC+TD P DR         ++TPE C   C GY +FGL+Y NEC+CG++ ++ 
Sbjct:  173 VRVPGWTYRGCWTDDPHDRTLTAKTRKGSITPEKCAQLCRGYTFFGLEYSNECYCGNSLSYG 234
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.950e-10
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   13 VIVDGPTELGCYTDSPTDRLFERVVVDDALTPEG-------CESTCAGYKYFGLQYRNECWCGDNDNFARHG 207
            V    P  LGC++D    R+F     + A+T E        C S C+G  Y+G QY  ECWCGDN ++A +G
Sbjct:  173 VYAQDPAYLGCFSDPADGRMFVWESSNTAMTAEASRRGRQACASRCSGSAYYGTQYSQECWCGDNADYAANG 244
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: UPI0018D90535 (protein SLG1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D90535)

HSP 1 Score: 63.2 bits (152), Expect = 6.010e-10
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:   22 DGPTELGCYTDSPTDRLFERVVVDDALTPEGCESTC---AGYKYFGLQYRNECWCGDNDNFARHGK 210
            + P  LGC+ D   DR       ++ ++ E C   C     YKY GLQY +ECWCGDN+++ RHG+
Sbjct:   33 NSPGYLGCFLDVNGDRALSVGPAEEYMSVEWCFRHCLEPTAYKYAGLQYAHECWCGDNEDYDRHGE 98
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: S3D7Y3_GLAL2 (Uncharacterized protein n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3D7Y3_GLAL2)

HSP 1 Score: 62.8 bits (151), Expect = 8.510e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   37 LGCYTDSPTDR-LFERVVVDDALTPEGCESTCAGYKYFGLQYRNECWCGDN 186
            LGCYT++   R L E+   DDA+T + C + CAG+KYFGL+Y  EC+CG++
Sbjct:  536 LGCYTEATNGRALKEKSFSDDAMTTQKCAANCAGFKYFGLEYYFECYCGNS 586
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: S8BT48_DACHA (Uncharacterized protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8BT48_DACHA)

HSP 1 Score: 62.8 bits (151), Expect = 8.660e-10
Identity = 27/62 (43.55%), Postives = 35/62 (56.45%), Query Frame = 1 
Query:   31 TELGCYTDSPTDRLFERVV-VDDALTPEGCESTCAGYKYFGLQYRNECWCGDNDNFARHGKI 213
            T LGCY +    R     +  DD +T E C + CA YKYFGL+Y  ECWCG+  N   +G +
Sbjct: 1616 TTLGCYKEPTGIRAIPNALYADDTMTVEKCATACAAYKYFGLEYGRECWCGNVLNTTPNGGV 1677
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: A0A4Q4Q087_9PLEO (WSC domain-containing protein n=1 Tax=Alternaria gaisen TaxID=167740 RepID=A0A4Q4Q087_9PLEO)

HSP 1 Score: 61.6 bits (148), Expect = 9.840e-10
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:   31 TELGCYTDSPTDRLFERVVVDDA-LTPEGCESTCAGYKYFGLQYRNECWCGDNDNFARHGKIE 216
            T LGC  DS    L ++  V +A LT E CE+ CAG+KYFG+Q+  EC+CG+   +A   K E
Sbjct:  137 TYLGCLVDSNNRVLGDKSFVSEANLTVERCETLCAGFKYFGIQWGQECYCGNTFKYATQHKPE 199
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: UPI0018D89E4F (WSC domain-containing protein ARB_07870-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D89E4F)

HSP 1 Score: 62.0 bits (149), Expect = 1.110e-9
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:   28 PTELGCYTDSPTDRLFERVVVDD--ALTPEGCESTCAGYKYFGLQYRNECWCGDNDNFARHG 207
            P  LGCY DS  DR  +     D  +++ + C S C  Y Y GL++ NEC+CGDN ++ +HG
Sbjct:  117 PGYLGCYEDSIYDRALQGSEEKDESSMSWQWCMSKCKNYNYMGLEFGNECYCGDNSDYGKHG 178
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: A0A437A3B5_9PEZI (Uncharacterized protein n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A437A3B5_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 1.620e-9
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:   31 TELGCYTDSPTDRLFERVV-VDDALTPEGCESTCAGYKYFGLQYRNECWCGDNDNFARHG 207
            T +GCY +    R     +  DD +T E C   CA YKYFGL+Y  ECWCGD  N    G
Sbjct: 1524 TTMGCYKEPSGGRAIPNALHADDTMTVEKCAIACADYKYFGLEYGRECWCGDVLNVTPSG 1583
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: UPI0018D98BF2 (WSC domain-containing protein 2-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D98BF2)

HSP 1 Score: 58.9 bits (141), Expect = 2.100e-9
Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1 
Query:   16 IVDGPTELGCYTDSPTDRLFERVVVDDALTP--EGCESTCAGYKYFGLQYRNECWCGDNDNFARHG 207
            ++  P  LGCY DS  DR        D +    E C  +C  Y+Y GL++ NEC+CG N ++ RHG
Sbjct:   31 VLGQPGYLGCYEDSKDDRALGGPSWKDVIEQSWEWCIHSCVSYQYMGLEFGNECFCGRNVDYGRHG 96
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BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Match: A0A4Q4M0E5_9PLEO (WSC domain-containing protein n=1 Tax=Alternaria tenuissima TaxID=119927 RepID=A0A4Q4M0E5_9PLEO)

HSP 1 Score: 60.1 bits (144), Expect = 2.390e-9
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 GCYTDSPTDRLFERVVVDDA-LTPEGCESTCAGYKYFGLQYRNECWCGD 183
            GC+TDS    L ++  ++DA LT E CE+ C+G+KYFG+Q  NEC+CG+
Sbjct:  104 GCFTDSKNRVLGDKSTLEDANLTVERCETICSGFKYFGIQNTNECYCGN 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21420.5636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H6FZZ8_9LECA4.070e-1143.55Uncharacterized protein n=2 Tax=Letharia TaxID=112... [more]
A0A6H5KAS7_9PHAE3.950e-1038.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018D905356.010e-1040.91protein SLG1-like n=1 Tax=Patiria miniata TaxID=46... [more]
S3D7Y3_GLAL28.510e-1050.98Uncharacterized protein n=1 Tax=Glarea lozoyensis ... [more]
S8BT48_DACHA8.660e-1043.55Uncharacterized protein n=1 Tax=Dactylellina hapto... [more]
A0A4Q4Q087_9PLEO9.840e-1046.03WSC domain-containing protein n=1 Tax=Alternaria g... [more]
UPI0018D89E4F1.110e-941.94WSC domain-containing protein ARB_07870-like n=1 T... [more]
A0A437A3B5_9PEZI1.620e-945.00Uncharacterized protein n=1 Tax=Arthrobotrys flagr... [more]
UPI0018D98BF22.100e-939.39WSC domain-containing protein 2-like n=1 Tax=Patir... [more]
A0A4Q4M0E5_9PLEO2.390e-951.02WSC domain-containing protein n=1 Tax=Alternaria t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21420contigH-paniculata_contig21420:2367..3437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog2880.D7FTD7
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size218
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21420.5636.1prot_H-paniculata_contig21420.5636.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21420 2367..3437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.6601686-CDS-H-paniculata_contig21420:2366..24141622929577.6601686-CDS-H-paniculata_contig21420:2366..2414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 2367..2414 -
1691480921.449753-CDS-H-paniculata_contig21420:2366..24141691480921.449753-CDS-H-paniculata_contig21420:2366..2414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 2367..2414 -
1622929577.6719584-CDS-H-paniculata_contig21420:2850..29071622929577.6719584-CDS-H-paniculata_contig21420:2850..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 2851..2907 -
1691480921.462263-CDS-H-paniculata_contig21420:2850..29071691480921.462263-CDS-H-paniculata_contig21420:2850..2907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 2851..2907 -
1622929577.6825957-CDS-H-paniculata_contig21420:3326..34371622929577.6825957-CDS-H-paniculata_contig21420:3326..3437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 3327..3437 -
1691480921.4713817-CDS-H-paniculata_contig21420:3326..34371691480921.4713817-CDS-H-paniculata_contig21420:3326..3437Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21420 3327..3437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21420.5636.1

>prot_H-paniculata_contig21420.5636.1 ID=prot_H-paniculata_contig21420.5636.1|Name=mRNA_H-paniculata_contig21420.5636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
PTKGVIVDGPTELGCYTDSPTDRLFERVVVDDALTPEGCESTCAGYKYFG
LQYRNECWCGDNDNFARHGKIE
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mRNA from alignment at H-paniculata_contig21420:2367..3437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21420.5636.1 ID=mRNA_H-paniculata_contig21420.5636.1|Name=mRNA_H-paniculata_contig21420.5636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1071bp|location=Sequence derived from alignment at H-paniculata_contig21420:2367..3437- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACAAAAGGGGTGATTGTCGACGGGCCGACTGAGCTGGGGTGCTACAC
CGACTCGCCCACCGACCGCCTGTTCGAGCGTGTAGTAGTCGACGACGCGT
TGACCCCTGAGGTGGGTAACGTTTTCTCTATTTTCATCCTGTGGAGACGA
TATATCAGTACACCTTTCGCTATCAATTGATGTTGTGCGAGGTGAACGGT
ACCTGTAGGGAGATGAGGATCGTTTACGGTGATTAAACAGGTGTTATTCG
AAGTCTGTTGCGCATGGGTCGCGATTCAGGTCGGGGGAAGTTGGTGATAT
GTCAAATGATTGACTTGGGTGCCAATAATTTGCGCCTGTCGTGCGGCTGG
ATGTACAGCCATACGATGGCGTTCAATACCTGAACGGTCCTCAAAAGTGA
CCCAACGTGGATTACAGCAATGGTTCATAAGCTCAACACTCTGCTCGTTG
TTCACACATTCCATTTGGCTGAGATTGTTCGTCTTCGTCCCCGTTTCCTC
CTTTCTTGACGGCCGCTGCTCCACATTCAGGGGTGTGAGAGCACTTGCGC
AGGCTACAAGTACTTCGGACTTCAATACAGAAACGAGGCAAGTACCGGGT
GCCGTTGGTGTCGCTAGCAAATTGCGTTTACATGGCGCCGTAGATGCATT
ATTGGTTGGTTTACTGACTTCTTTATAGAACATACCGTGCTTGGGTAATG
TAGTCGCACGACGTCAAACAAATGGTGTCCCTCGGGCAAATTCCAGGCAT
CACCTAATATCCGCTTGCTGATATCACGTTAAGTTCTTTTCTCCTTAAGT
TGGTTCCGATCGTGATTTGCGAGATACGATGTGTGTTCTTTGTCTGTCGA
GGGCCTCATTTCTGGTTGAGGTCAGTCACCTCTGGGGCCCATTCGCAGCG
CCATTTCCGTAGAGCCCCGCCACGATGTTCAGGAGAGTACTCTGAACATG
TATATTGAGTGCGCGCAAGGCAACCGGCACTGACCACATCCCGTCCCAAC
GTTTCGTTCGATGCTTCTATCAGTGCTGGTGCGGTGATAACGACAACTTC
GCTCGCCATGGCAAGATTGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21420:2367..3437-

>mRNA_H-paniculata_contig21420.5636.1 ID=mRNA_H-paniculata_contig21420.5636.1|Name=mRNA_H-paniculata_contig21420.5636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig21420:2367..3437- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACAAAAGGGGTGATTGTCGACGGGCCGACTGAGCTGGGGTGCTACAC
CGACTCGCCCACCGACCGCCTGTTCGAGCGTGTAGTAGTCGACGACGCGT
TGACCCCTGAGCCAACAAAAGGGGTGATTGTCGACGGGCCGACTGAGCTG
GGGTGCTACACCGACTCGCCCACCGACCGCCTGTTCGAGCGTGTAGTAGT
CGACGACGCGTTGACCCCTGAGGGGTGTGAGAGCACTTGCGCAGGCTACA
AGTACTTCGGACTTCAATACAGAAACGAGGGGTGTGAGAGCACTTGCGCA
GGCTACAAGTACTTCGGACTTCAATACAGAAACGAGTGCTGGTGCGGTGA
TAACGACAACTTCGCTCGCCATGGCAAGATTGAATGCTGGTGCGGTGATA
ACGACAACTTCGCTCGCCATGGCAAGATTGAA
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