mRNA_H-paniculata_contig2142.5634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2142.5634.1
Unique NamemRNA_H-paniculata_contig2142.5634.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 164 bits (414), Expect = 4.160e-41
Identity = 98/298 (32.89%), Postives = 153/298 (51.34%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEI-------------------------RC-------DCDGVQESGRGRSD--NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +   R WNS LD+ +  IG  ++ +D C+Y   +DG     +VA+++DD+ +AG+  EK+ + K +I +RF++KD+G L  +LG+++                          C       D      S    S+  N  E +  VG L+Y S+ T PDI  AV+  A    +P  E ++  KRIFRYL    ++G+ +   +N        ADWA D+  R+ST+GY F++N  A+ W S KQ  V  S+ AAEYVA   A +E +++  LL  +        T++EDN+SAI +SK
Sbjct:  299 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSK 594          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 158 bits (400), Expect = 5.940e-41
Identity = 96/304 (31.58%), Postives = 153/304 (50.33%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGVQESGR----------------GRSD------------------------NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +   R WNS LD+ +  IG  ++ +D C+Y   +DG     +VA+++DD+ +AG+  EK+ + K +I +RF++KD+G L  +LG+++      +QE G+                G  +                        N  E +  VG L+Y S+ T PDI  AV+  A    +   E ++  KRIFRYL    ++G+ +   +N        ADWA D+  R+ST+GY F++N  A+ W S KQ  V  S+  AEYVA   A +E +++  LL  +        T++EDN+SAI +SK
Sbjct:   24 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQV------IQEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSK 319          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 160 bits (405), Expect = 2.800e-39
Identity = 97/298 (32.55%), Postives = 152/298 (51.01%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEI-------------------------RC-------DCDGVQESGRGRSD--NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +   R WNS LD+ +  IG  ++ +D C+Y   +DG     +VA+++DD+ +AG+  EK+ + K +I +RF++KD+G L  +LG+++                          C       D      S    S+  N  E +  VG L+Y S+ T PDI  AV+  A    +P  E ++  KRIFRYL    ++G+ +   +N        ADWA D+  R+ST+GY F++N  A+ W S KQ  V  S+  AEYVA   A +E +++  LL  +        T++EDN+SAI +SK
Sbjct:  913 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSK 1208          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY)

HSP 1 Score: 149 bits (375), Expect = 2.270e-35
Identity = 98/310 (31.61%), Postives = 148/310 (47.74%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIR-------------------CDCDGVQES-------------GRGRSDNSIEGRG-------------MVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEG-VHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +  GR W   LD+ +  +G ++   D CLY  ++DG    L+V VY+DD+A+AG++   V  FKH++ +RF + D G L  +LG+++                     D  G++ES                +S ++ E +              +VG ++YA T T PDI HAV   A    +P +      KR+ RYL     F +  GG S      G   +DWA DV+ R S  GY+FK+  G I W S KQP V  S+  AEY+A+  A KE +++  LL  +G     +T +  DN+  I LS+
Sbjct:  717 KQSGRQWKKKLDEAMAELGFEKGQADECLYVLKEDGHIV-LMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDLTFILGVQVIRNRQNRTIHMNQTTYIRGFLDRFGMKESMPVHTPLVPKHNLSAMQSPSTPEEQKNYLLYAGELKYLEVVGAVLYA-TQTRPDIQHAVGVLAQFGSNPGKPHLEALKRVLRYLRGTAHFSLRLGGGSGNVDLIGWTDSDWASDVDSRRSIAGYVFKMTGGCISWSSKKQPTVALSTVEAEYMASANAAKEAIWLRTLLADLGHSQGTATLIHADNQGCIALSR 1024          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI)

HSP 1 Score: 142 bits (358), Expect = 1.360e-34
Identity = 96/285 (33.68%), Postives = 145/285 (50.88%), Query Frame = 2
Query:  440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAG-RREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG-------------------VQESG----------RGRSD----NSIEGRGM--------VGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKS---NGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFR 1159
            R W    D +++ +G +R + D C YF R  GG   +++ +Y+DD+ +AG  +++V E K  + + F MKDLG   ++LG+++  D                      +Q+S           +  SD    N  E   M        VG LM+A   T PDIA AV   + +M +P RE +ST KRI RY+    +  + FGG      G+    V +D+A D + R+STTGY+F L  GA+ W S  Q +V  S+T AEY+AA +A KET++I  LL  +G +
Sbjct:  139 RCWYKRFDSYIMSLGYNRLSADPCTYFKRS-GGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSYLTLRGY----VDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVALSTTEAEYMAATQACKETIWIQRLLEELGHK 418          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A0V0VDB7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V0VDB7_9BILA)

HSP 1 Score: 142 bits (358), Expect = 3.290e-33
Identity = 94/304 (30.92%), Postives = 144/304 (47.37%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRRE-KVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG------------VQESGRGRSDNSIEG----------------------------RGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +  GR W   LD+ +   GL  ++ D C+YF R   G    + A+Y+DD+ IA     +++E K  + + F+M D+G +   LGI+I+   +G            + E  R  +   +E                             R +VGLLMY S  T PDIA AV   +   E+ C   ++  KR+ RYL     +G+ F  +++G       ADW  + + R S TGY+FK  + AI W S KQ  V  SST AEY+A  EA KE +++  ++ +I   C  +  L  DN+S + L+K
Sbjct:  534 KQSGRQWYKKLDEKLSQYGLKATSGDPCVYFERR--GRELAIAAMYVDDVIIASNNTARLNELKKALAKSFKMNDMGPIHYCLGIKIKQSANGDIEMSQKKYIMDILEKFRMMNSKPVETQIDASNKLSAELFPRTEAEKAEMQNMPYRSLVGLLMYLSVSTRPDIAFAVSLLSQFNENYCSHHWTAAKRVLRYLKKTASYGLRFQ-RNSGALVGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEAMHLKRMIEAITGLCNNNNVLQSDNQSELKLAK 834          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A0V0W368_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W368_9BILA)

HSP 1 Score: 142 bits (358), Expect = 4.010e-33
Identity = 94/304 (30.92%), Postives = 144/304 (47.37%), Query Frame = 2
Query:  428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRRE-KVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG------------VQESGRGRSDNSIEG----------------------------RGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            +  GR W   LD+ +   GL  ++ D C+YF R   G    + A+Y+DD+ IA     +++E K  + + F+M D+G +   LGI+I+   +G            + E  R  +   +E                             R +VGLLMY S  T PDIA AV   +   E+ C   ++  KR+ RYL     +G+ F  +++G       ADW  + + R S TGY+FK  + AI W S KQ  V  SST AEY+A  EA KE +++  ++ +I   C  +  L  DN+S + L+K
Sbjct:  832 KQSGRQWYKKLDEKLSQYGLKATSGDPCVYFERR--GRELAIAAMYVDDVIIASNNTARLNELKKALAKSFKMNDMGPIHYCLGIKIKQSANGDIEMSQKKYIMDILEKFRMMNSKPVETQIDASNKLSAELFPRTEAEKAEMQNMPYRSLVGLLMYLSVSTRPDIAFAVSLLSQFNENYCSHHWTAAKRVLRYLKKTASYGLRFQ-RNSGALVGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEAMHLKRMIEAITGLCNNNNVLQSDNQSELKLAK 1132          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A6A2ZAL9_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZAL9_HIBSY)

HSP 1 Score: 141 bits (355), Expect = 1.010e-32
Identity = 95/281 (33.81%), Postives = 154/281 (54.80%), Query Frame = 2
Query:  440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAV-YIDDLAIAG-RREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG-----VQESGRGR--SDNSIEGRGM----------VGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKS---NGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            R W    D F++ +G +R     C YF R   G+ D ++ + Y+DD+ +AG  ++ ++E K  + + F MKDLGS  ++L ++I  D         Q++   +  S  SIE   M          VG LM+A   T P IA AV   + +M +P +E ++  KRI RY+    +  + FGG +   NG+    V +D+A D++  +STTGY+FK++ GA+ W S  Q +V  S+T  EYVAA +A KE + +  LL  +G   +   +LF D++SA++L++
Sbjct:  880 RCWYKRFDSFIMCLGYNRLNAYPCAYFKRS--GDNDFVILLLYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILWMQIHRDRSNRKIWLSQKNYLKKILSRFSIEEERMEMSRVPYASAVGSLMFAMICTRPYIAQAVGVVSRYMANPGKEHWNIVKRILRYIKGTSNVALCFGGSNLLINGN----VDSDYAGDLDKSKSTTGYVFKVDGGAVSWVSKLQSVVGTSTTEVEYVAATQASKEAILLKMLLEELGHN-QEFVSLFCDSQSALHLAR 1153          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: R7QN09_CHOCR (Integrase catalytic domain-containing protein n=4 Tax=Chondrus crispus TaxID=2769 RepID=R7QN09_CHOCR)

HSP 1 Score: 139 bits (349), Expect = 5.880e-32
Identity = 80/220 (36.36%), Postives = 121/220 (55.00%), Query Frame = 2
Query:  440 RDWNSTLDDFVVG-IGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGVQESGRGRSDNSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVH-ADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEY 1090
            R W++ ++DF++G +G + S +D CL+  R   G T +L+A+Y+DDL +AG   + +   K  +N+RF MKDLG     +G+EI  D          RS  ++     +G LMY   GT PD+A+A+ + + H  +PC   ++  KR+ RY+    + GI F  KS      G   ADWA   + R+ST+GY+FK   GAI W S KQ +V  S+    Y
Sbjct:  921 RQWHAKVNDFLIGELGFETSRSDPCLFIKRI--GNTIMLIALYVDDLLLAGSDIDAIKWMKGELNKRFEMKDLGKAKVCIGLEIERD----------RSAKTL-----MGSLMYLMVGTRPDLAYAIGKLSQHSANPCESHWAGVKRVMRYVQGTRNLGIVFDNKSKSPELFGFSDADWAGCSDSRKSTSGYVFKFCGGAISWSSRKQTVVATSTWTISY 1123          
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A151RMC4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RMC4_CAJCA)

HSP 1 Score: 139 bits (349), Expect = 5.990e-32
Identity = 86/295 (29.15%), Postives = 145/295 (49.15%), Query Frame = 2
Query:  440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRD-DGGETDLLVAVYIDDLAI-AGRREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGV----------------------------------QESGRGRSDNSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
            R W S +D +    G  RS  D+ LY  +  DGG   L++++Y+DDL + +  +++V +    +  +F+M +LG +   LG+E+    DG+                                  +E G G+ + S+  R +VG L+Y  T + PD+ +A    +  M+ P    F+  KR+ RYL     FGI +  + NG     V +DWA +++  +STTGY+F L  G   W S KQ +V  S+  AEYVA   A  + +++  +L  +G     +T ++ D+KSAI +++
Sbjct:  903 RAWYSRIDSYFCSQGFRRSENDATLYVKKLLDGGS--LIISLYVDDLLVTSNNQQEVQQLMEEMQNQFKMSNLGKMNYFLGLEVHQTKDGIFMNQEKYAHEVLKKYKMESCKFVPTPLVQNLKLSKEDGAGKVNVSLY-RSLVGSLLYL-TSSRPDLMYAASLLSRFMQSPSEIHFAATKRVLRYLKGTTQFGIWYKPRKNGSLIGYVDSDWAGNIDDMKSTTGYVFSLGSGMFSWNSKKQEIVAQSTAEAEYVAGAAAANQAIWLRKILLDLGAEQLEATEIYCDSKSAIAIAE 1193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7D9HZ03_PARCT4.160e-4132.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT5.940e-4131.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HEL0_PARCT2.800e-3932.55Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2R6NJS8_9APHY2.270e-3531.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z7AL20_9LAMI1.360e-3433.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0V0VDB7_9BILA3.290e-3330.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0W368_9BILA4.010e-3330.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A2ZAL9_HIBSY1.010e-3233.81Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
R7QN09_CHOCR5.880e-3236.36Integrase catalytic domain-containing protein n=4 ... [more]
A0A151RMC4_CAJCA5.990e-3229.15Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2142contigH-paniculata_contig2142:858..2254 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog28532.XP_010555983.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3884B@33090,3GZ1B@35493,3HXH8@3699,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Exons2
Model size1216
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2142.5634.1prot_H-paniculata_contig2142.5634.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2142 1865..2239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.1734676-UTR-H-paniculata_contig2142:857..13781622929577.1734676-UTR-H-paniculata_contig2142:857..1378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 858..1378 -
1691480921.301055-UTR-H-paniculata_contig2142:857..13781691480921.301055-UTR-H-paniculata_contig2142:857..1378Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 858..1378 -
1622929577.1892796-UTR-H-paniculata_contig2142:1559..18641622929577.1892796-UTR-H-paniculata_contig2142:1559..1864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 1560..1864 -
1691480921.3131378-UTR-H-paniculata_contig2142:1559..18641691480921.3131378-UTR-H-paniculata_contig2142:1559..1864Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 1560..1864 -
1622929577.2122874-UTR-H-paniculata_contig2142:2239..22541622929577.2122874-UTR-H-paniculata_contig2142:2239..2254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 2240..2254 -
1691480921.333458-UTR-H-paniculata_contig2142:2239..22541691480921.333458-UTR-H-paniculata_contig2142:2239..2254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2142 2240..2254 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929577.2002237-CDS-H-paniculata_contig2142:1864..22391622929577.2002237-CDS-H-paniculata_contig2142:1864..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2142 1865..2239 -
1691480921.3236032-CDS-H-paniculata_contig2142:1864..22391691480921.3236032-CDS-H-paniculata_contig2142:1864..2239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2142 1865..2239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2142.5634.1

>prot_H-paniculata_contig2142.5634.1 ID=prot_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MEEEWGALVENGTWESEGPGRLPAGRKAIRTKWSFKRELKKDGNVARYKA
RIVAQGFSQVEGEDFIETSAPVAHIRTLCTVFSLATEYDFELEGMDVDVA
YLNDGVEQELFVKLPPEFSLSPET*
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mRNA from alignment at H-paniculata_contig2142:858..2254-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2142.5634.1 ID=mRNA_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-paniculata_contig2142:858..2254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATGGCGCGCGGCAATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGG AACATGGGAAAGCGAAGGCCCGGGGAGGTTACCGGCAGGGCGGAAGGCAA TTCGTACGAAATGGAGTTTCAAGCGGGAACTGAAGAAGGATGGAAACGTG GCACGCTACAAAGCGCGAATAGTGGCTCAAGGCTTTTCACAGGTGGAGGG TGAAGATTTCATTGAAACTAGTGCCCCCGTAGCTCACATACGGACGTTAT GTACTGTTTTTAGCCTGGCTACCGAATACGATTTTGAATTAGAAGGCATG GACGTAGATGTGGCGTATTTGAACGACGGGGTAGAACAAGAGCTATTTGT TAAGCTACCCCCCGAGTTTTCCCTTTCTCCCGAGACATAACGTGTGTGCA CCGCCTGCGTAAAAGCCTGTACTGCCTCAAGCAGGCGGCCGTGATTGGAA TAGCACCCTTGACGATTTTGTTGTTGGGATAGGACTCGACCGTTCCACTA CCGACTCATGCTTGTACTTTTCTCGCGACGATGGAGGAGAGACAGACCTT CTGGTGGCCGTCTATATTGACGACCTGGCCATTGCTGGCCGTCGTGAGAA GGTAGACGAGTTCAAACATAACATAAATCAGCGTTTTAGGATGAAAGACT TGGGCTCTCTCGCGCGCGTGTTAGGAATAGAGATAAGATGTGACTGTCCT AATGGTACCATAACCATCTCGCACGGCAGCTACATCCGCGAGGTACTAAA AAAGGTACACTTTTGACGAGTTTCGAGGGGTAACTGCACCTGTAGATGGA GTGAAAATTTTGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCCAAGTC ACTTGGGACTATACTGTCGGACATAGGCGATGGAGTACAAGAAAGCGGCA GAGGGAGAAGTGATAATAGTATTGAAGGCAGAGGCATGGTAGGATTACTC ATGTACGCCTCCACAGGAACTGGACCTGATATAGCACACGCGGTACACCA AGCAGCACATCATATGGAGGACCCGTGTCGGGAAGACTTCAGTACATGCA AGCGCATTTTTCGTTATCTCAGTACTGTGCCCGACTTCGGCATTACGTTC GGCGGTAAGAGTAATGGTCACGGTCCGGAAGGCGTTCATGCCGATTGGGC GGAAGATGTCGAGGGCCGAGAGTCCACAACAGGATATATATTCAAGCTAA ACGACGGTGCGATAATGTGGTACTCTGGGAAGCAACCGTTAGTCATGTGG TCCAGTACAGCGGCAGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGAC GGTATATATTGGGGATTTACTAGGATCGATAGGTTTCAGATGTAGGGGGA GCACGACATTGTTTGAGGACAATAAATCAGCTATTAATCTCAGTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2142:858..2254-

>mRNA_H-paniculata_contig2142.5634.1 ID=mRNA_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig2142:858..2254- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAGAATGGGGGGCGTTGGTGGAAAATGGAACATGGGAAAGCGA
AGGCCCGGGGAGGTTACCGGCAGGGCGGAAGGCAATTCGTACGAAATGGA
GTTTCAAGCGGGAACTGAAGAAGGATGGAAACGTGGCACGCTACAAAGCG
CGAATAGTGGCTCAAGGCTTTTCACAGGTGGAGGGTGAAGATTTCATTGA
AACTAGTGCCCCCGTAGCTCACATACGGACGTTATGTACTGTTTTTAGCC
TGGCTACCGAATACGATTTTGAATTAGAAGGCATGGACGTAGATGTGGCG
TATTTGAACGACGGGGTAGAACAAGAGCTATTTGTTAAGCTACCCCCCGA
GTTTTCCCTTTCTCCCGAGACATAAATGGAGGAAGAATGGGGGGCGTTGG
TGGAAAATGGAACATGGGAAAGCGAAGGCCCGGGGAGGTTACCGGCAGGG
CGGAAGGCAATTCGTACGAAATGGAGTTTCAAGCGGGAACTGAAGAAGGA
TGGAAACGTGGCACGCTACAAAGCGCGAATAGTGGCTCAAGGCTTTTCAC
AGGTGGAGGGTGAAGATTTCATTGAAACTAGTGCCCCCGTAGCTCACATA
CGGACGTTATGTACTGTTTTTAGCCTGGCTACCGAATACGATTTTGAATT
AGAAGGCATGGACGTAGATGTGGCGTATTTGAACGACGGGGTAGAACAAG
AGCTATTTGTTAAGCTACCCCCCGAGTTTTCCCTTTCTCCCGAGACATAA
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