mRNA_H-paniculata_contig2142.5634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 164 bits (414), Expect = 4.160e-41 Identity = 98/298 (32.89%), Postives = 153/298 (51.34%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEI-------------------------RC-------DCDGVQESGRGRSD--NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ R WNS LD+ + IG ++ +D C+Y +DG +VA+++DD+ +AG+ EK+ + K +I +RF++KD+G L +LG+++ C D S S+ N E + VG L+Y S+ T PDI AV+ A +P E ++ KRIFRYL ++G+ + +N ADWA D+ R+ST+GY F++N A+ W S KQ V S+ AAEYVA A +E +++ LL + T++EDN+SAI +SK
Sbjct: 299 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGNI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAAAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSK 594
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT) HSP 1 Score: 158 bits (400), Expect = 5.940e-41 Identity = 96/304 (31.58%), Postives = 153/304 (50.33%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGVQESGR----------------GRSD------------------------NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ R WNS LD+ + IG ++ +D C+Y +DG +VA+++DD+ +AG+ EK+ + K +I +RF++KD+G L +LG+++ +QE G+ G + N E + VG L+Y S+ T PDI AV+ A + E ++ KRIFRYL ++G+ + +N ADWA D+ R+ST+GY F++N A+ W S KQ V S+ AEYVA A +E +++ LL + T++EDN+SAI +SK
Sbjct: 24 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQV------IQEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDKPMTIYEDNQSAIAMSK 319
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT) HSP 1 Score: 160 bits (405), Expect = 2.800e-39 Identity = 97/298 (32.55%), Postives = 152/298 (51.01%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEI-------------------------RC-------DCDGVQESGRGRSD--NSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ R WNS LD+ + IG ++ +D C+Y +DG +VA+++DD+ +AG+ EK+ + K +I +RF++KD+G L +LG+++ C D S S+ N E + VG L+Y S+ T PDI AV+ A +P E ++ KRIFRYL ++G+ + +N ADWA D+ R+ST+GY F++N A+ W S KQ V S+ AEYVA A +E +++ LL + T++EDN+SAI +SK
Sbjct: 913 KQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDGDI--FVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAIEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPDCVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVALSAAAQEALWMRQLLTDLNVNIDEPMTIYEDNQSAIAMSK 1208
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A2R6NJS8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NJS8_9APHY) HSP 1 Score: 149 bits (375), Expect = 2.270e-35 Identity = 98/310 (31.61%), Postives = 148/310 (47.74%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIR-------------------CDCDGVQES-------------GRGRSDNSIEGRG-------------MVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEG-VHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ GR W LD+ + +G ++ D CLY ++DG L+V VY+DD+A+AG++ V FKH++ +RF + D G L +LG+++ D G++ES +S ++ E + +VG ++YA T T PDI HAV A +P + KR+ RYL F + GG S G +DWA DV+ R S GY+FK+ G I W S KQP V S+ AEY+A+ A KE +++ LL +G +T + DN+ I LS+
Sbjct: 717 KQSGRQWKKKLDEAMAELGFEKGQADECLYVLKEDGHIV-LMVLVYVDDMAVAGKKLALVKRFKHDLAERFDITDGGDLTFILGVQVIRNRQNRTIHMNQTTYIRGFLDRFGMKESMPVHTPLVPKHNLSAMQSPSTPEEQKNYLLYAGELKYLEVVGAVLYA-TQTRPDIQHAVGVLAQFGSNPGKPHLEALKRVLRYLRGTAHFSLRLGGGSGNVDLIGWTDSDWASDVDSRRSIAGYVFKMTGGCISWSSKKQPTVALSTVEAEYMASANAAKEAIWLRTLLADLGHSQGTATLIHADNQGCIALSR 1024
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A2Z7AL20_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AL20_9LAMI) HSP 1 Score: 142 bits (358), Expect = 1.360e-34 Identity = 96/285 (33.68%), Postives = 145/285 (50.88%), Query Frame = 2
Query: 440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAG-RREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG-------------------VQESG----------RGRSD----NSIEGRGM--------VGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKS---NGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFR 1159
R W D +++ +G +R + D C YF R GG +++ +Y+DD+ +AG +++V E K + + F MKDLG ++LG+++ D +Q+S + SD N E M VG LM+A T PDIA AV + +M +P RE +ST KRI RY+ + + FGG G+ V +D+A D + R+STTGY+F L GA+ W S Q +V S+T AEY+AA +A KET++I LL +G +
Sbjct: 139 RCWYKRFDSYIMSLGYNRLSADPCTYFKRS-GGNDYIILLLYVDDMLVAGPNKDRVQELKAQLAREFDMKDLGPANKILGMQVHRDRSNRKIWLSQTNYLQKFLHRFNMQDSKPISTPLPVNFKLSSDMCPSNEAERMEMSRIPYASAVGSLMFAMICTRPDIAQAVGAVSRYMANPGREHWSTVKRILRYIKGTSNAALCFGGSYLTLRGY----VDSDYAGDPDKRKSTTGYVFTLAGGAVSWVSKLQTVVALSTTEAEYMAATQACKETIWIQRLLEELGHK 418
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A0V0VDB7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=4 Tax=Trichinella TaxID=6333 RepID=A0A0V0VDB7_9BILA) HSP 1 Score: 142 bits (358), Expect = 3.290e-33 Identity = 94/304 (30.92%), Postives = 144/304 (47.37%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRRE-KVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG------------VQESGRGRSDNSIEG----------------------------RGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ GR W LD+ + GL ++ D C+YF R G + A+Y+DD+ IA +++E K + + F+M D+G + LGI+I+ +G + E R + +E R +VGLLMY S T PDIA AV + E+ C ++ KR+ RYL +G+ F +++G ADW + + R S TGY+FK + AI W S KQ V SST AEY+A EA KE +++ ++ +I C + L DN+S + L+K
Sbjct: 534 KQSGRQWYKKLDEKLSQYGLKATSGDPCVYFERR--GRELAIAAMYVDDVIIASNNTARLNELKKALAKSFKMNDMGPIHYCLGIKIKQSANGDIEMSQKKYIMDILEKFRMMNSKPVETQIDASNKLSAELFPRTEAEKAEMQNMPYRSLVGLLMYLSVSTRPDIAFAVSLLSQFNENYCSHHWTAAKRVLRYLKKTASYGLRFQ-RNSGALVGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEAMHLKRMIEAITGLCNNNNVLQSDNQSELKLAK 834
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A0V0W368_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0W368_9BILA) HSP 1 Score: 142 bits (358), Expect = 4.010e-33 Identity = 94/304 (30.92%), Postives = 144/304 (47.37%), Query Frame = 2
Query: 428 QAGGRDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRRE-KVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG------------VQESGRGRSDNSIEG----------------------------RGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
+ GR W LD+ + GL ++ D C+YF R G + A+Y+DD+ IA +++E K + + F+M D+G + LGI+I+ +G + E R + +E R +VGLLMY S T PDIA AV + E+ C ++ KR+ RYL +G+ F +++G ADW + + R S TGY+FK + AI W S KQ V SST AEY+A EA KE +++ ++ +I C + L DN+S + L+K
Sbjct: 832 KQSGRQWYKKLDEKLSQYGLKATSGDPCVYFERR--GRELAIAAMYVDDVIIASNNTARLNELKKALAKSFKMNDMGPIHYCLGIKIKQSANGDIEMSQKKYIMDILEKFRMMNSKPVETQIDASNKLSAELFPRTEAEKAEMQNMPYRSLVGLLMYLSVSTRPDIAFAVSLLSQFNENYCSHHWTAAKRVLRYLKKTASYGLRFQ-RNSGALVGFSDADWGGNSDDRRSYTGYVFKFGNAAISWESRKQRTVALSSTEAEYMALSEACKEAMHLKRMIEAITGLCNNNNVLQSDNQSELKLAK 1132
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A6A2ZAL9_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZAL9_HIBSY) HSP 1 Score: 141 bits (355), Expect = 1.010e-32 Identity = 95/281 (33.81%), Postives = 154/281 (54.80%), Query Frame = 2
Query: 440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRDDGGETDLLVAV-YIDDLAIAG-RREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDG-----VQESGRGR--SDNSIEGRGM----------VGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKS---NGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
R W D F++ +G +R C YF R G+ D ++ + Y+DD+ +AG ++ ++E K + + F MKDLGS ++L ++I D Q++ + S SIE M VG LM+A T P IA AV + +M +P +E ++ KRI RY+ + + FGG + NG+ V +D+A D++ +STTGY+FK++ GA+ W S Q +V S+T EYVAA +A KE + + LL +G + +LF D++SA++L++
Sbjct: 880 RCWYKRFDSFIMCLGYNRLNAYPCAYFKRS--GDNDFVILLLYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILWMQIHRDRSNRKIWLSQKNYLKKILSRFSIEEERMEMSRVPYASAVGSLMFAMICTRPYIAQAVGVVSRYMANPGKEHWNIVKRILRYIKGTSNVALCFGGSNLLINGN----VDSDYAGDLDKSKSTTGYVFKVDGGAVSWVSKLQSVVGTSTTEVEYVAATQASKEAILLKMLLEELGHN-QEFVSLFCDSQSALHLAR 1153
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: R7QN09_CHOCR (Integrase catalytic domain-containing protein n=4 Tax=Chondrus crispus TaxID=2769 RepID=R7QN09_CHOCR) HSP 1 Score: 139 bits (349), Expect = 5.880e-32 Identity = 80/220 (36.36%), Postives = 121/220 (55.00%), Query Frame = 2
Query: 440 RDWNSTLDDFVVG-IGLDRSTTDSCLYFSRDDGGETDLLVAVYIDDLAIAGRR-EKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGVQESGRGRSDNSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVH-ADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEY 1090
R W++ ++DF++G +G + S +D CL+ R G T +L+A+Y+DDL +AG + + K +N+RF MKDLG +G+EI D RS ++ +G LMY GT PD+A+A+ + + H +PC ++ KR+ RY+ + GI F KS G ADWA + R+ST+GY+FK GAI W S KQ +V S+ Y
Sbjct: 921 RQWHAKVNDFLIGELGFETSRSDPCLFIKRI--GNTIMLIALYVDDLLLAGSDIDAIKWMKGELNKRFEMKDLGKAKVCIGLEIERD----------RSAKTL-----MGSLMYLMVGTRPDLAYAIGKLSQHSANPCESHWAGVKRVMRYVQGTRNLGIVFDNKSKSPELFGFSDADWAGCSDSRKSTSGYVFKFCGGAISWSSRKQTVVATSTWTISY 1123
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Match: A0A151RMC4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RMC4_CAJCA) HSP 1 Score: 139 bits (349), Expect = 5.990e-32 Identity = 86/295 (29.15%), Postives = 145/295 (49.15%), Query Frame = 2
Query: 440 RDWNSTLDDFVVGIGLDRSTTDSCLYFSRD-DGGETDLLVAVYIDDLAI-AGRREKVDEFKHNINQRFRMKDLGSLARVLGIEIRCDCDGV----------------------------------QESGRGRSDNSIEGRGMVGLLMYASTGTGPDIAHAVHQAAHHMEDPCREDFSTCKRIFRYLSTVPDFGITFGGKSNGHGPEGVHADWAEDVEGRESTTGYIFKLNDGAIMWYSGKQPLVMWSSTAAEYVAAGEAGKETVYIGDLLGSIGFRCRGSTTLFEDNKSAINLSK 1216
R W S +D + G RS D+ LY + DGG L++++Y+DDL + + +++V + + +F+M +LG + LG+E+ DG+ +E G G+ + S+ R +VG L+Y T + PD+ +A + M+ P F+ KR+ RYL FGI + + NG V +DWA +++ +STTGY+F L G W S KQ +V S+ AEYVA A + +++ +L +G +T ++ D+KSAI +++
Sbjct: 903 RAWYSRIDSYFCSQGFRRSENDATLYVKKLLDGGS--LIISLYVDDLLVTSNNQQEVQQLMEEMQNQFKMSNLGKMNYFLGLEVHQTKDGIFMNQEKYAHEVLKKYKMESCKFVPTPLVQNLKLSKEDGAGKVNVSLY-RSLVGSLLYL-TSSRPDLMYAASLLSRFMQSPSEIHFAATKRVLRYLKGTTQFGIWYKPRKNGSLIGYVDSDWAGNIDDMKSTTGYVFSLGSGMFSWNSKKQEIVAQSTAEAEYVAGAAAANQAIWLRKILLDLGAEQLEATEIYCDSKSAIAIAE 1193 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2142.5634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2142.5634.1 >prot_H-paniculata_contig2142.5634.1 ID=prot_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp MEEEWGALVENGTWESEGPGRLPAGRKAIRTKWSFKRELKKDGNVARYKAback to top mRNA from alignment at H-paniculata_contig2142:858..2254- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2142.5634.1 ID=mRNA_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1397bp|location=Sequence derived from alignment at H-paniculata_contig2142:858..2254- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2142:858..2254- >mRNA_H-paniculata_contig2142.5634.1 ID=mRNA_H-paniculata_contig2142.5634.1|Name=mRNA_H-paniculata_contig2142.5634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig2142:858..2254- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |