mRNA_H-paniculata_contig2140.5632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2140.5632.1
Unique NamemRNA_H-paniculata_contig2140.5632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE)

HSP 1 Score: 402 bits (1033), Expect = 2.690e-124
Identity = 243/464 (52.37%), Postives = 301/464 (64.87%), Query Frame = 3
Query:  915 PVYSPPKERRIDDLVTEFLGNNAPPPPEPTDQDSAMANPQGWVSALGRLAGRRAWNTLVDVASTMLVVHRGGGAPGLTAEQAMNVRLRRALGLLRLGRGVEAAEAAAEAREEGRQTKLAPVSVAARLAAAGAKATCDGAAELDAVDELTTLKLELEGLIATA---AASSTPPSQHAPDGTSGRPLPLTIE-----------QALIWRRRVISTLANVFVARGNWRLALGLLETMGEE-------------AEESSAAGAGGKGAGS----CRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
            P   PP+E+ +D LV EFL   APPPPEP ++  A+ +P GWV+ALG+LA RRAW  LV++A TMLV HRGGGAPGLTA+QAM++RLRRA+G+L+LGR  EAAEAA                               G AE +A+DELT LK ELEG+IA     +A +  PS+   + T+                    +A  WRRRV+  L N+FVARGNWR+ALGLLE +GE+             + E     A  +GA +     RVE+LSRIGRVFLQFG+L+DAE+YFRRAE      G          N RI+VNRGLL  S+N+FV+AQENF  AA  AA  L++K++      DD+W+ +   +G  LL +ALNNLSLAMVYSCDV+RGV+TLE LIRK+PRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDIDP+SFR+S
Sbjct:  271 PPRQPPQEKTLDALVLEFLSTEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEEEALDELTVLKFELEGVIAAGDGPSALAPSPSEDGMEATTXXXXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVARGNWRMALGLLEDLGEDQCGERSTPACSSSSHEDVTGAAREEGARAPVDDLRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAAVGS---------NPRILVNRGLLNFSRNEFVAAQENFRNAATEAA-MLAAKEEPPDDS-DDNWLWATLDQGAGLLDTALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 4.480e-99
Identity = 204/411 (49.64%), Postives = 249/411 (60.58%), Query Frame = 3
Query:  981 APPPPEPTDQDSAMANPQGWVSALGRLAGRRAWNTLVDVASTMLVVHRGGGAPGLTAEQAMNVRLRRALGLLRLGRGVEAAEAAAEAREEGRQTKLAPVSVAARLAAAGAKATCDGAAELDAVDELTTLKLELEGLIATAAASSTPPSQHAPDGTSGRPLPLTIEQALIWRRRVISTLANVFVARGNWRLALGLLETMGEEAEESSAAGAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
            APPPPEP ++  A+ +P GWV+ALG+LA RRAW  LV++A TMLV HRGGGAPGLTA+QAM++RLRRA+G+L+LGR  EAAEAA                             C+G AE +A+DELT LK+       TAAA+                                                       GEE   +S          + RVE+LSRIGRVFLQFG+L+DAE+YFRRAE    V G          N RI+VNRGLL  S+N+FV+AQENF  AA  AA  L++K++      DD+W+ +   +G  LL +ALNNLSLAMVYSCDV+RGV+TLE LIRK+PRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDID +SFR+S
Sbjct:    3 APPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEGEAEEEALDELTALKV-------TAAAA-------------------------------------------------------GEEGARASV--------DNVRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAVAGS---------NPRILVNRGLLDFSRNEFVAAQENFRNAATEAA-MLAAKEEPPDGS-DDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 4.440e-33
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 3
Query: 1914 DDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
            DD W+ +   +G  LL SAL NLSLAM  SCDV+RGV+TL+ LIRKNPRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDID +SFR+S
Sbjct:   13 DDIWLRATLDQGAGLLDSALTNLSLAMC-SCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASA-KKRTLQAVTQRFRLEDIDTSSFRMS 110          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A024G727_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G727_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.460e-21
Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 3
Query: 1635 RVEVLSRIGRVFLQFGALQDAELYFRRAEEVI-LVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
            ++ VLSRIGR+++Q G ++ AE+ F+    +   +  D    GH     ++++N+GLLLLS+++   A   F     +  +   ++  + ++ I  D  +  E   L+ +A+NN ++  +YSCDV   V  LE +IR  P  ++ +VVVFNL +LYDL +D   S  +K  L+ +   Y LE ID A+FRI
Sbjct:  562 QIIVLSRIGRIYMQLGDIESAEILFKHVSVLSEKLSSDEKQPGH----PQVLMNKGLLLLSRDNIQEAIHTFRSILHLGLAEGKAQNDKWSNTILPDEDLMLEQGELICAAVNNYAICALYSCDVHGAVTMLERMIRLCPLRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADLYNLEHIDAAAFRI 748          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: F0WJF3_9STRA (Uncharacterized protein AlNc14C121G6682 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJF3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.560e-21
Identity = 66/191 (34.55%), Postives = 113/191 (59.16%), Query Frame = 3
Query: 1635 RVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTH-CIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
            ++ VLSRIGR+++Q G ++ AE+ F+    +           + + +A++++N+GLLLLS+++   A E F     +  +   +K  Q ++  + DD ++  E   L+ +A+NN ++  +YSCDV   V  LE++IR +P  ++ +VVVFNL +LYDL +D   S  +K  L+ +   Y LE ID A+FRI
Sbjct:  582 QIAVLSRIGRIYMQLGDIESAEMVFQHVRHL---SEKLPSHQNQTLHAQVLMNKGLLLLSRDNVQEAIEIFSSILHLELANGQTKNSQWSNEIVLDDLLLEQE--DLICAAVNNYAICALYSCDVHGAVAMLEKMIRLSPVRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADAYDLEHIDAAAFRI 767          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A448ZA12_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA12_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.420e-21
Identity = 85/282 (30.14%), Postives = 134/282 (47.52%), Query Frame = 3
Query: 1488 WRRRVISTLANVFVARGNWRLALGLLE---------TMGEEAEESSAAGAGGKGAGSCRV----------------EVLSRIGRVFLQFGALQDAELYFRRAEEV-------------ILVEGDAGDKG--HVSDNARIMVNRGLLLLSKNDFVSAQENFEEAA----AVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFR 2201
            W   + S LANV++ RG WRLA+G L+         T  E A     A +G  G  +                   E+LSR GR+ LQ G +++A   F++A  +             +L E  +G      V+  A + +NRGL+  S++ + +A E+F  A     A     +SS  + R H            + L   A+NN SL  +Y+C++   V  LE L+R++P L++ + + FNLCTLY+L  D+  +   K+ LQ + +R+ L D+ P SFR
Sbjct:  268 WLAHLDSALANVYIRRGAWRLAIGALDRVVDLVPEATKAEVAAMLEIARSGNDGGSAIETDAEERITAFLSKTYLSEILSRRGRILLQTGGIREASEVFKQARALWTEAESMPLPPVTLLSEPFSGRTKVLRVAMPALVDINRGLVGFSESRYDAAMESFSAAVRGLRAERGVVVSSGYRAR-HWTGPAVAGCQAPSVLYTEAVNNTSLCHLYTCNMREAVLALEGLVREDPTLFLTERIAFNLCTLYELGSDSPVATRNKKVLQLIAKRFFLHDVGPESFR 548          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A7S3DRH9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRH9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.230e-18
Identity = 81/273 (29.67%), Postives = 123/273 (45.05%), Query Frame = 3
Query: 1512 LANVFVARGNWRLALGLLETMGEEAEESSAA----------------GAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDK-------GHV---SDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHC-----------IDDDWVISG-----EGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
            L+N+F+A+G WR+AL  LE M E    ++                  GA      + + E+ SR GR+ LQ GAL+ A+  F +A+ +      A  K        H        ++  N GLL  S   +  A E+F ++      A   +Q Q               +  DW+  G        +L      NL++A +Y+C +   +  +E LIRK+P   + +    NLCTLY+LS DA  +  KKRTLQ + +R+ L DI P SFR+
Sbjct:  135 LSNLFLAQGEWRMALESLERMVEFLPPAARVLWSQHNNKNNNKPVPEGAIQALVHAAQCEIWSRQGRLLLQMGALEGAQTLFEQAQSLWEDVPHAESKLLRQIPPAHCLIQQVEPQLHANLGLLYFSYQKYNLALEHFRKSLETTTLAQKQQQVQEEETKHEAYALTNPYLASDWLGGGLIAPVARHTLHAEVTTNLAVAALYTCRLHEAIHVMEGLIRKSPSEALTERSALNLCTLYELSGDAATATRKKRTLQLIAKRFFLHDIGPESFRL 407          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A0P1AQI3_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQI3_PLAHL)

HSP 1 Score: 92.0 bits (227), Expect = 2.270e-15
Identity = 73/240 (30.42%), Postives = 110/240 (45.83%), Query Frame = 3
Query: 1458 LPLTIEQALIWRRRVISTLANVFVARGNWRLALGLLETMGEEAEESSAAGAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVI----LVEGDA---GDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAV 2156
            L + I  A  W R     LAN  V++  + LAL +   + E                  +V +LSR+GR+ LQ G L+  +  F  A  +I    L  GD+     +   +  AR++ + GLL  ++N    A   FE    +   A            DD       G  ++ SA+NN ++  +Y CDV   V  LE++IR NPR ++  V+VFNL +LYDL FD V S  +K  L+ +
Sbjct:  461 LNVEISTAARWLRIAQFALANHLVSQQKFTLALRICSVIDEHYVSDQE-----------KVIILSRVGRIRLQMGDLEATQKLFDAARHLIDRLKLRSGDSPTVAAEDMAALEARLLFDDGLLFFAQNKLQEALSAFESVMYLHVKA------------DDVEADLFLGEDIVCSAVNNYAICALYCCDVKAAVAALEQMIRSNPRRFLNGVLVFNLSSLYDLLFDNVTSKNRKEMLKKI 677          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A7S1U3K9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3K9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.480e-15
Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query: 1782 IMVNRGLLLLSKNDFVSAQ---------ENFEEAAAVAAS----ALSSKQKQRTHCIDDDWVISGEGTSLLG---------SALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
            + V RG +  S+ +FV AQ         E  ++ A V       AL  ++    H     W  +G    L G         +A NN+++A +Y+C + R VQ LE+LIR++P  Y+     FNLCTLYDLS +   +  KKR LQ V   + LED++  SFRI
Sbjct:   40 LSVARGTVHFSRGEFVKAQMWYAKALEGERKQQEADVNLGGLNPALGLQEGGSQHLGMGGWRAAGVTPGLAGVGFDADLVIAAANNMAIAALYTCQLNRAVQILEDLIRQDPHRYLCKETAFNLCTLYDLSCEPSVAGRKKRVLQQVALLFYLEDLNAQSFRI 202          
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: L8H1C1_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1C1_ACACA)

HSP 1 Score: 87.8 bits (216), Expect = 3.920e-14
Identity = 57/189 (30.16%), Postives = 93/189 (49.21%), Query Frame = 3
Query: 1638 VEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
            V +LS +GR+ LQ+G L  AE YFR  E+++            +++  +M+NRG+  + ++ +  A   FE    +                D+ W            A NN ++  +Y  D+ R + +LE+LI  NP   + DVVVFNLCTLYDL  D+  S  KK+ L A+  ++  +D D +  ++
Sbjct:  450 VVLLSAVGRLLLQWGNLTGAERYFRDVEQLVT---------EPTNSVVVMMNRGMEYIGRDRYSDAARAFERVLELEP--------------DNVW------------AANNRAVCWLYLRDLQRSITSLEQLIAANPEANLLDVVVFNLCTLYDLESDS--SGVKKKALLAIISQFASDDFDTSGIKV 601          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWF7_9PHAE2.690e-12452.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLE2_ECTSI4.480e-9949.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFR3_9PHAE4.440e-3374.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024G727_9STRA2.460e-2134.03Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WJF3_9STRA2.560e-2134.55Uncharacterized protein AlNc14C121G6682 n=1 Tax=Al... [more]
A0A448ZA12_9STRA3.420e-2130.14Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3DRH9_9STRA4.230e-1829.67Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A0P1AQI3_PLAHL2.270e-1530.42Uncharacterized conserved protein n=1 Tax=Plasmopa... [more]
A0A7S1U3K9_9STRA9.480e-1534.97Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
L8H1C1_ACACA3.920e-1430.16Tetratricopeptide repeat domain containing protein... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2140contigH-paniculata_contig2140:13894..22606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue1.7e-86
Seed eggNOG ortholog2880.D8LLE2
Preferred nameTRAPPC12
KEGG koko:K10865,ko:K17087,ko:K20309
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0003824,GO:0004175,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0006810,GO:0006888,GO:0006996,GO:0007030,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010256,GO:0016043,GO:0016192,GO:0016787,GO:0017016,GO:0017112,GO:0017137,GO:0019538,GO:0019899,GO:0022402,GO:0022607,GO:0030008,GO:0031267,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0048518,GO:0050000,GO:0050789,GO:0050794,GO:0051020,GO:0051128,GO:0051179,GO:0051234,GO:0051259,GO:0051303,GO:0051310,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0071704,GO:0071840,GO:0090230,GO:0090234,GO:0098687,GO:0098772,GO:0098813,GO:0099023,GO:0140096,GO:1901564,GO:1902115,GO:1903827,GO:1903829,GO:1905340,GO:1905342
EggNOG free text desc.regulation of kinetochore assembly
EggNOG OGsKOG2796@1,KOG2796@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400,ko04131,ko04147
Exons8
Model size2760
Cds size2184
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2140.5632.1prot_H-paniculata_contig2140.5632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2140 13920..22056 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.9343283-UTR-H-paniculata_contig2140:13893..139191622929576.9343283-UTR-H-paniculata_contig2140:13893..13919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 13894..13919 +
1691480921.1711233-UTR-H-paniculata_contig2140:13893..139191691480921.1711233-UTR-H-paniculata_contig2140:13893..13919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 13894..13919 +
1622929577.08257-UTR-H-paniculata_contig2140:22056..226061622929577.08257-UTR-H-paniculata_contig2140:22056..22606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 22057..22606 +
1691480921.2656062-UTR-H-paniculata_contig2140:22056..226061691480921.2656062-UTR-H-paniculata_contig2140:22056..22606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 22057..22606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.9503279-CDS-H-paniculata_contig2140:13919..140051622929576.9503279-CDS-H-paniculata_contig2140:13919..14005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 13920..14005 +
1691480921.181639-CDS-H-paniculata_contig2140:13919..140051691480921.181639-CDS-H-paniculata_contig2140:13919..14005Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 13920..14005 +
1622929576.967625-CDS-H-paniculata_contig2140:14233..148101622929576.967625-CDS-H-paniculata_contig2140:14233..14810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 14234..14810 +
1691480921.1892667-CDS-H-paniculata_contig2140:14233..148101691480921.1892667-CDS-H-paniculata_contig2140:14233..14810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 14234..14810 +
1622929576.9836686-CDS-H-paniculata_contig2140:15221..153091622929576.9836686-CDS-H-paniculata_contig2140:15221..15309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 15222..15309 +
1691480921.1969085-CDS-H-paniculata_contig2140:15221..153091691480921.1969085-CDS-H-paniculata_contig2140:15221..15309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 15222..15309 +
1622929577.0010478-CDS-H-paniculata_contig2140:15994..163741622929577.0010478-CDS-H-paniculata_contig2140:15994..16374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 15995..16374 +
1691480921.2134032-CDS-H-paniculata_contig2140:15994..163741691480921.2134032-CDS-H-paniculata_contig2140:15994..16374Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 15995..16374 +
1622929577.0132532-CDS-H-paniculata_contig2140:18304..185171622929577.0132532-CDS-H-paniculata_contig2140:18304..18517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 18305..18517 +
1691480921.224219-CDS-H-paniculata_contig2140:18304..185171691480921.224219-CDS-H-paniculata_contig2140:18304..18517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 18305..18517 +
1622929577.032122-CDS-H-paniculata_contig2140:18791..192021622929577.032122-CDS-H-paniculata_contig2140:18791..19202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 18792..19202 +
1691480921.234116-CDS-H-paniculata_contig2140:18791..192021691480921.234116-CDS-H-paniculata_contig2140:18791..19202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 18792..19202 +
1622929577.0470104-CDS-H-paniculata_contig2140:19659..197951622929577.0470104-CDS-H-paniculata_contig2140:19659..19795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 19660..19795 +
1691480921.243724-CDS-H-paniculata_contig2140:19659..197951691480921.243724-CDS-H-paniculata_contig2140:19659..19795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 19660..19795 +
1622929577.064684-CDS-H-paniculata_contig2140:21763..220561622929577.064684-CDS-H-paniculata_contig2140:21763..22056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 21764..22056 +
1691480921.2528505-CDS-H-paniculata_contig2140:21763..220561691480921.2528505-CDS-H-paniculata_contig2140:21763..22056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 21764..22056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2140.5632.1

>prot_H-paniculata_contig2140.5632.1 ID=prot_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=728bp
MDDDNDQKPPAMISQEGPLRRINPPQFAGPVAFRNSGSFAQNPATATEVS
SSRTAETTTSARLPTGGATGGSTTLASFRQGSTTAASQPLTNHPLAASSL
TQRPSSSAAHQQTDTSSSLGRAVKPQPAQQVSVVNYPPVQPVPSDAQDLF
AHPAQLQQPPPGSDPLWHLLRDAAQITPDDVGDIVQEKTSQEQHSGGAGL
AAVGAFEYGKLSQPGWGPSSEKAVTTPLVNSTPQQTKGMPALPPPPQGHS
ASRYQTSPPNYPQNRQQDVPVAVPVAVPVAAPVLPTPAATAVNQAPPVYS
PPKERRIDDLVTEFLGNNAPPPPEPTDQDSAMANPQGWVSALGRLAGRRA
WNTLVDVASTMLVVHRGGGAPGLTAEQAMNVRLRRALGLLRLGRGVEAAE
AAAEAREEGRQTKLAPVSVAARLAAAGAKATCDGAAELDAVDELTTLKLE
LEGLIATAAASSTPPSQHAPDGTSGRPLPLTIEQALIWRRRVISTLANVF
VARGNWRLALGLLETMGEEAEESSAAGAGGKGAGSCRVEVLSRIGRVFLQ
FGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDF
VSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNL
SLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVAS
AAKKRTLQAVGQRYRLEDIDPASFRIS*
back to top

mRNA from alignment at H-paniculata_contig2140:13894..22606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2140.5632.1 ID=mRNA_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8713bp|location=Sequence derived from alignment at H-paniculata_contig2140:13894..22606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCTATCGGCATGCTCTGAGCGAACATGGACGACGACAATGACCAGAAA CCACCTGCCATGATCAGCCAGGAGGGCCCTCTCAGACGCATCAACCCTCC ACAATTCGCCGGGTAAGTTTTAATTATGTTTGCCAAGAAAATACGAGCAT ACCAGATACAAGCAAAGCACTAATATCGAGGTATGGGTGTCGGTAATCTT GGGAGCTTGTTCTCTGCTGTCCACCGTCATCACGGAAGATGATCATGCAG CTATCATCTTGATGTGTAGTTGCTGCCACACGGTCTCACCGCCGTCTGTA CGGCACCACATTCTCTGTGTTAATTCTTTTGTGCGTTCAGGCCTGTGGCG TTTAGGAACTCAGGAAGTTTTGCACAAAACCCCGCAACAGCAACGGAAGT CTCCTCCTCCCGTACTGCAGAGACGACCACCTCCGCACGGCTGCCCACGG GCGGAGCAACGGGCGGCAGCACCACTTTAGCTTCTTTCCGACAAGGATCA ACAACTGCTGCTTCTCAACCACTAACAAACCATCCCCTGGCCGCCAGCTC GCTGACGCAGCGGCCGTCTTCATCCGCAGCCCACCAACAAACAGACACTT CATCGTCACTGGGTCGTGCTGTGAAGCCCCAACCAGCACAGCAAGTCTCA GTGGTCAACTACCCTCCCGTGCAACCTGTGCCCTCAGACGCGCAAGACTT GTTCGCGCATCCAGCTCAACTCCAGCAGCCACCACCTGGATCTGATCCCT TATGGCATTTACTCCGAGATGCAGCGCAAATTACGCCCGACGATGTCGGC GATATTGTACAGGAGAAAACGTCGCAGGAACAACACTCAGGCGGTGCGGG CTTGGCGGCTGTTGGGGCGTTCGAGTACGGAAAGCTGTCACAGCCTGGAT GGGGTCCTTCGTCTGAGGTGGGAGGAAGTACGTGAGGACGACTCCGAAAA TAGGGTGTGCGTGAATAAATGTAGCTATCTTAGATTGCCGTGCTTGTTGT ACTATATTGTACAGACATTTCGAACGAGAAAAAAACGAGCAACGGGGAAA GTATGCGTGTTGTCGGAAGAAGTTAAACCAGGCGGCTGAGGCGGAGTAGG GCTTGTCTCGTCGTCACCAGTTCGTTCGCCCCCTGCTGCTCTGCACCGCA TTGTTCTACGAAACTGCAGCGCTGTGAGCTACATGCACCGTTTCTAGCGC TCGAAATTGCAACCGTAGGATATAGAGTAGCGCTGTCCTCTCGCACCTTG ACTCGCCTGTAACCTGCGATTGTACATGAACTTTTACTAAAAGTATGTTA TGTGTTAAACCTCGTCGCGTGCTCGCAGAAAGCAGTGACCACACCGCTAG TCAACAGCACCCCACAACAAACAAAGGGAATGCCAGCTCTTCCCCCTCCC CCACAAGGCCATTCAGGTGCGGAAGGCGTTGCATTGGGCAGGCTCAGCCT GCAACAGTTTCTGGCTTGACCGCATTTGCGTAGTCAAGGTCCGGAGAATA CAGTTTGTTCCCTCGCGTATTCCAACAGTTCAGCTTGCAGCGGGAAGTGT AGATCTTGGGTTCACTGGACTATCGTTTATGTGTGTGGCGCATTCCGTGT GGGTTGAGTATTATCTTCTGCTGGCTACATGATTACCAGGGCTGTGTATA GGCTTTTCAAACAATATGTATCTAGCGGACAGTGAGGACGGACGATACAA CGATACGTTGCTTATATACTGGCGAACCTAACATGTTGGGAACGTGTCGA TGCGAGCGAAGTGACCAATCCGTGGGAAGCCCCTGATGAGCGCTTTAGCG CTAACCAAAATGACTGTCCCTGTCTGGTACAGAGGCCTCGCTGGAGGCGT CGTGGGAGGCAGAAATATACGCATTTTTTTCCCTTCTTGTTGGATGATGA CCATATCATGTGTACTTTCGCTGAATCATGAGTCAAGCATGCGGGACAAA ACTACGAATATAACGTTTTGATCGCCGATACACAATCCTCATGATTACTG CCTGGCGACTATGAACCCACCAATGTTGCCTTGAGAGACGCGCGACCTCC CTCTTGGAAACAGATTCAACCCCATGTACCTCTTGCTCCTTTCCATCACA GCATCTAGGTATCAGACATCTCCACCCAACTACCCACAAAACCGTCAGCA AGACGTGCCAGTAGCTGTGCCAGTAGCTGTGCCAGTAGCTGCGCCAGTAT TACCAACTCCAGCGGCAACCGCCGTTAATCAGGCACCACCAGTGTATTCC CCACCTAAAGAGCGACGTATTGACGACCTGGTCACGGAGTTCCTAGGAAA CAACGCACCGCCACCCCCAGAACCAACGGACCAAGACTCAGCGATGGCGA ATCCGCAAGGGTGGGTGTCAGCCCTGGGACGACTTGCTGGGCGTAGAGCA TGGAACACTCTCGTTGATGTGGCGAGTACCATGCTCGTGGTACATCGGGG CGGGGGAGCTCCGGGATTGACGGCTGAGCAGGTTAGAGGGAAGAAAACAC TACAAGATGTAGCTGTTCGCAAGCGTAATACTCTAGGTGTACACCAAAGT TGTGCGGCAATTTGGTAGGGCTATGCACTGATACCCTATAAGCGCAGTAC TAGTGGTACTGGCAGGGTACTGATAGTGGCTGAGATGGTTGCCAGTATTC CAGTATGTTGAGGATTCTCGTGGGTCACTGTAAAAGCGCCTCGTTTTCCA TTATAAATTCTTCATTGGTCATTTTTCCGTTGCCGCTGTGCTCGGAGGCC GACGGTCGCACCACCTGTTTTCACAAGATTTTTGATCCACAGGTGTCGAT TTGGTTCCCTCGGTGAACCGTTCTCTCGCTCGCAAGGCCCGCAAAGACGG ACAGCAGTTATGTATGCCGCCGGTCATCATTTACATCTTCGATGCTTGGC GCGTGTTTTGCTTGCTCTGGCTTTAGTTGATATTGTGTTATAAGGCGTAG ACTCGCAGTATGTTCAAGAGGGATCTTGTTGGTTTCATGTTTGAGTCATC GATGTTTTATGTTTGATCGCCACATACATGTTGTTGCGGTAGGCCACTAC TGATCGTTGAGAGAGTGGTGGTGGCAAGGATACGCGTACGGTATTGTGTG ATGAACATTTAATTTTAGTATTATACCACTGTATTTGTCCACCAACGAAT GTATTTGCTGAATTATTTGTATACAGTAAGTCTATTAACAACAGGACCAG CAGCAACAGCAACAACTGCAGCAGCAAAAACAACAAAACACATCGGGCAA TCTAGTATATCACAGGCAATTGCACCATCAGCACTACAGTCATCGTATCA TCATGCTCGTGGTACACTCACTGCAATAAATCAACTATTATTATTGTGTA TCTTGCATAAAACTATCGCCTATTTTCAGTAAGAAATCATAGGTCCAATG AGAAAGGACAAAAGGCGTCCTCTACAGCCGTATAACTAACATGGAATGCT TGCGTTGAACAGGACAGCATACATACCATACACCATGGGGTCAAATCATC ATTTCAATTCATAAATATACTGATGATCATGATGATCCTAAATGGCATTG AAGTCGGCGGCACACTAAATTTCGCCCAGTCAATATAATGCCTGTAAAAG AGGTGCTTGCCTAATAATCATAGTAATCTTGAATGACGTTGAAGTTGGCG GCACACTAACCTACCTCCATTCAGTACATAGTATAAGAGGTGCTTGCATC ATAATAATAATCGTAATAACAATAATAATAGCAATCTTAATTATTATCAT GATAATGACCACGATAACAGTCATTATACTAATCATAATAATCATAACAA TCGCCCCCTGTTTCCGCACAGGATTGATCCGTAGGTGTCGATTCGGTTCC TTTTATGAGGTCAGCGCTCTTTTCGAGGATTATCGCCCAGCGGTCATGGA ACGGCGAAGCACCGTGAGGCCAAATCACCATTTCAATGAAAAAAAAAAGT TGGTCTTCAGCCCCGTGAGAGAGACGCTCGGCCTCACGCGTTGAATCGCA TGCAGTCCATGCCTGGACGTGAGCACACTTGACCCGGAAAAGAAGCAAGG GATACATACCATAGCCATACACGAACACGCAAGAAAAACACGAAAGAAAC AAAGGTGCACTGCGCTGGTACTCTGCTCTGATCGATCTGTCCACCTAATC AAGTGGAGGCCAGCGAAAAAAAAATGAATGCATGCAGCAAAAACCTTAAA CACTTGGATTTTATACCGAGGCGCACGGCCGCACCGCCTGTTTTCGCATA TGATTGATTTACGGGCGTTGATTCGGTTCCCTCGGCGACTGTTTCCACCT TTCAACATACTGACGCTGCTAGTATCTCGCCCTACAATTTGGTGAGCATT GCAACAGCGTCACTGAACAGCGTCCCTGGTTATGCTTCCGATTTGAATGT CCCTTGTTCAGGCGATGAATGTGCGCCTCCGGCGTGCGTTAGGATTATTG AGGCTTGGGCGAGGGGTAGAGGCAGCGGAAGCAGCGGCGGAAGCAAGAGA GGAAGGAAGACAGACAAAGCTAGCCCCCGTAAGCGTTGCTGCTAGACTCG CTGCTGCTGGGGCCAAGGCGACCTGTGACGGGGCAGCGGAATTGGATGCG GTGGACGAGCTAACTACCTTGAAGGTAACCACTACGCCGTTTTCTTTATG GGAGGCAACCTAGGCGTGGTTGGGGAATGACTGATGTGTTCCAGTGCCAG TCCATTGTTTATCGTTGTTGAGAAAGCTAGAGATTTTGGGTCTAATGGGG GAAGCACATTATGATGAAATCAACTGACATTACATTGCGTAGTACCACAA CCAAACTTACGACGGTTTTGCTAATTTGAGCTATTTTCTCCCTCAACCCT TGACGCCTTGTGCGTGCAATCGTTTCTGTACGTATGCATCGCAACTAGCT TGAATTGGAGGGTTTAATTGCCACAGCTGCGGCAAGTTCTACCCCTCCAT CGCAGCACGCCCCTGACGGCACTAGCGGTAGACCATTACCATTAACAATT GAACAAGCATTAATTTGGCGACGACGGGTGATATCAACCTTAGCTAATGT CTTTGTAGCGCGCGGTAATTGGCGATTGGCACTTGGCTTATTGGAAACCA TGGGCGAAGAAGCGGAGGAGAGCAGTGCTGCGGGGGCAGGGGGAAAGGGT GCGGGAAGTTGTCGAGTGGAGGTGCTGTCAAGGATTGGAAGGGTTTTCTT GCAATTTGGCGCACTTCAGGACGCCGAGCTTTACTTCCGGCGTGCGGAGG AGGTTATATTGGTGGAAGGAGACGCGGGAGACAAAGGCCACGTGAGCGAC AACGCAAGGGTGGGCACAGTCGCTACGAATAATGGCATTATAACTGCAAA TAATGAGTCGTGTCGAGACAGGAGCTTGAGCTCGATATGTTTCTCCAACC CGCGTCGTGGGATGATTCTTGTCTGCGGTCTGATTGAGGTTCCCTTAGCA TGCATCCCTGCAGCCCATGTAAGAACGGCTTTGAAAGGGTCAGTCATTTT GCGAGGTGATGGATTGTGTTGTTGTGGTGTGAGGTTCTCTTCTGGTGTGA GGTTCTCTTCTGGTGTGAGGTTCTCTTCTGGGCCAAGCACGGTTAGGTAA TCCCTTTCCGTTACGGACACTGTCACGGGGGTTATCTTACGCTTCTCTAA CGTAATTGTGATCCTTGAGTTTGCAATGATGGCGTGAGATTCCGCGTGGA GTGCTCAACCTGTTGTAGCTCATGCGAATCCTAACCGATTCACACATCGC CGCTTCACCTCTGCAGATAATGGTGAATCGTGGTCTGCTGCTGCTCTCCA AGAATGACTTCGTATCAGCACAGGAGAATTTTGAGGAAGCCGCAGCGGTG GCAGCTTCTGCTCTCTCTTCTAAGCAGAAACAACGAACACATTGTATCGA TGGTGAGGGACAGATTTTTATGCTGTTTTCCAGAGGCGTTGTGATACACC CTTCGGTTCAGTAGCAACCAGTCCGTTGCGGAGGCTCTTTGAGGTCATAC TCATAGACTTAACAAGTCAGGCGAATTTTGCGGCTTGATCTCGAATGCAA AGGAACACTGCACAGCGCATAGTAGTAGCACACACACCTACAGGACGGTG TCGTAACAAATCCATCATGTACTATGCGTCGTCACTATTGCAGCGGAACA CTCTGCGCTGGTTCTGCTTTCACAAGAAGTAGATATCTGCAGGAAAAGTA GACGAAGTAGACGTAGTTTTCCTTGCCCGACATAATCGATTACGATGGGC AGTGGAGCTTGAAAGACCGACAAACCGCACGAGAGCCCAAATTATCCTAT TCATGTCTGGACTTTGCGAAGTGCGTACCACGTACACTCTATGGGTCTGT CGCGAACGTCATGGTCATGACCTACGAGATACCTGGAAATCGCAGATTCG ACGACATAAACTTACACAGTAGACTTGATCAAATCATTACGACCTGTCAG TGATTGCACTGTTCCGGAGAAAAAGCGATTTTAACATTTTATATTTTCTA AAAATTTCTATCGAACTTGCACACTCGTTTTAGTTTTTGCGCAGTCATAC ATAAACCATGAATAACCAAAATGTTTCTATTATACTGTGTTACGATGCAA GAATAATCATTCCCCAGCAAGCTTCACAGACATCCCGGCCTTCTCGTGGT ATCTTCGAGACAGGAATAACATAAAATGCCTTCGCCATGCCTAGGTTCCG AGACATTTCTACGCGGCATTTTTGTCACGATGCCTAATTGTAAGAGCTCC ACGTTCACAAAAACTTCTAGCAGAAACCCAGCCCAGCGACGGTGTCAATC GCCGTGCAGGTCTGCAGAATGTGCAACCTCGGACCTTCACGGACACCTAT CAGCACTCGAATTGAACCTGGCACGCAAAGAGTTGTGCCCCCTAATATAT GCTTTCAAAGAATCGTGCTGTTGAAGAGAGTCCTGCGTTGTGCGCAGGAA CACTCAGAGGAAATGACATCTTTGACCAACGCATTTAACTGTACACGATT AATATGCACCAGTATGAGCGTTTGACATCCATGCTAGCAGCAGTAGCACC CCCTGTGTGGTGGTGGTGAGGGTGGTTCGGTGGGAAATTAGGGACAACTA CACTTGTTCTACATTAGTGAGCCGCAGAAATCGTTCCGCTATACAGTGCG GTGCGCGAGAAGCAACACATCTACAGCAACCCCAACTGACACTCCGGTAC CAGTATGTGCAGATGTGGTCTGTCTACATGCATTTCTTGTGTAGACTGAC ACGTTTTGTTTTTCCCTTCAGACATGCCATTGATTCACTGCGCAGATACG TTGACGCGTGGGTATGCTCTTTCTCTCTTTCTCTTCGAAACTAGCGCTTT TCTTTTATCAATCCTGGCACTTTAGTGACCAGTCAGACGCTGCAAAACTT GCGCAAAAAACGCATCGTAGGTAATAGATGCGACTGCGGCTGTTACGAGC TCTACTGCTACACGAGTTGTGCCATTGTGCGTGGTCAGGAAGGAAAAGAC TACACTGCTTACATGGCTTTTACGCACTCTCAGTGGAAGGATGCTCATAT CGAAGCCCTCTCGACCAATTTTCGTGTACGCTGCGATGCTTTTTTTCACG TATAACAAGTCTCGTGTCTCGTCTTCTTTCGATCGTAGTGCACGAGTGTC TCTGAATGATGCTATTTTTTCCCTGATTGCCTCGCGTTTTCTGTAGCCCC ACTTAGCCAAGGTTGAATTGCGCCTGCGCCAAACCCTAGTTAACGCAAGA GAAAATATCCACCCTTCTATCCCGTGTTTTCAATGATCGCAATATAGCTG CCCTTGCCTGTTCGCCTAATATTCTCTTTCCCCCTACTCTGGCGTAATTC AACTCGTGAACGAAATTCAGACGACTGGGTGATATCGGGCGAGGGAACGA GTCTATTAGGATCCGCCCTTAACAACCTAAGCCTAGCGATGGTCTACTCG TGTGACGTCATGAGAGGGGTCCAGACGCTGGAAGAGTTGATTCGGAAAAA TCCGCGTCTTTACATGCAGGATGTGGTGGTGTTCAACCTTTGTACGCTAT ATGATTTGTCGTTCGATGCTGTCGCAAGTGCTGCGAAGAAGCGGACATTA CAAGCAGTCGGGCAGCGTTACCGCCTGGAAGATATTGACCCTGCATCTTT CCGCATCAGCTGAGCTAGCTTTTCAGTATTATTGTGCTTCGTGTCAACCT GTATCCTATGTCGGTATTTTAGATTGATTGTGGATTGGTGTTCTACTTAG TGTCGGCAGTAGTGCAGTGCGTTTATGTTGTTCTATTTAGTGCATACTTG CCTACGCCAATGCTCTGTTCCTGTCAGGTAATTTGATTCTGTCTGTTCAT GTAGGTGAGTGCGGTACGGCGCTCGAGTATCTGGTCGTATCGCAGATTTG TCAGGTGCAGCATGATTTGCCGTGTTTGTTTTGATGTAGTTGAGGATGTG TTTCAAACTGTCCAACTCGTGGCGTGTACAGGGCGGTGGGCTTTTTGCCG CAGTTGCACAGGGCTCTAGTCCCATTCTGTAATTGACGTTTTTACTGAAG TGCGCCACAGAAGTTTACCCAAATATTTGAATACCATAATTTGCGGCTTC AAAATCAAAGGGTAGAGTCATGTCAACGGAAGACGGTTGCCACGGACCTA CGCCCGAACGGGTAGGGTAGCTCGTGTACTTAGCATGACTGGAAGTCTAG TCAGAGGTCTTTT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2140:13894..22606+

>mRNA_H-paniculata_contig2140.5632.1 ID=mRNA_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4368bp|location=Sequence derived from alignment at H-paniculata_contig2140:13894..22606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGACGACAATGACCAGAAACCACCTGCCATGATCAGCCAGGAGGG
CCCTCTCAGACGCATCAACCCTCCACAATTCGCCGGATGGACGACGACAA
TGACCAGAAACCACCTGCCATGATCAGCCAGGAGGGCCCTCTCAGACGCA
TCAACCCTCCACAATTCGCCGGGCCTGTGGCGTTTAGGAACTCAGGAAGT
TTTGCACAAAACCCCGCAACAGCAACGGAAGTCTCCTCCTCCCGTACTGC
AGAGACGACCACCTCCGCACGGCTGCCCACGGGCGGAGCAACGGGCGGCA
GCACCACTTTAGCTTCTTTCCGACAAGGATCAACAACTGCTGCTTCTCAA
CCACTAACAAACCATCCCCTGGCCGCCAGCTCGCTGACGCAGCGGCCGTC
TTCATCCGCAGCCCACCAACAAACAGACACTTCATCGTCACTGGGTCGTG
CTGTGAAGCCCCAACCAGCACAGCAAGTCTCAGTGGTCAACTACCCTCCC
GTGCAACCTGTGCCCTCAGACGCGCAAGACTTGTTCGCGCATCCAGCTCA
ACTCCAGCAGCCACCACCTGGATCTGATCCCTTATGGCATTTACTCCGAG
ATGCAGCGCAAATTACGCCCGACGATGTCGGCGATATTGTACAGGAGAAA
ACGTCGCAGGAACAACACTCAGGCGGTGCGGGCTTGGCGGCTGTTGGGGC
GTTCGAGTACGGAAAGCTGTCACAGCCTGGATGGGGTCCTTCGTCTGAGG
CCTGTGGCGTTTAGGAACTCAGGAAGTTTTGCACAAAACCCCGCAACAGC
AACGGAAGTCTCCTCCTCCCGTACTGCAGAGACGACCACCTCCGCACGGC
TGCCCACGGGCGGAGCAACGGGCGGCAGCACCACTTTAGCTTCTTTCCGA
CAAGGATCAACAACTGCTGCTTCTCAACCACTAACAAACCATCCCCTGGC
CGCCAGCTCGCTGACGCAGCGGCCGTCTTCATCCGCAGCCCACCAACAAA
CAGACACTTCATCGTCACTGGGTCGTGCTGTGAAGCCCCAACCAGCACAG
CAAGTCTCAGTGGTCAACTACCCTCCCGTGCAACCTGTGCCCTCAGACGC
GCAAGACTTGTTCGCGCATCCAGCTCAACTCCAGCAGCCACCACCTGGAT
CTGATCCCTTATGGCATTTACTCCGAGATGCAGCGCAAATTACGCCCGAC
GATGTCGGCGATATTGTACAGGAGAAAACGTCGCAGGAACAACACTCAGG
CGGTGCGGGCTTGGCGGCTGTTGGGGCGTTCGAGTACGGAAAGCTGTCAC
AGCCTGGATGGGGTCCTTCGTCTGAGAAAGCAGTGACCACACCGCTAGTC
AACAGCACCCCACAACAAACAAAGGGAATGCCAGCTCTTCCCCCTCCCCC
ACAAGGCCATTCAGAAAGCAGTGACCACACCGCTAGTCAACAGCACCCCA
CAACAAACAAAGGGAATGCCAGCTCTTCCCCCTCCCCCACAAGGCCATTC
AGCATCTAGGTATCAGACATCTCCACCCAACTACCCACAAAACCGTCAGC
AAGACGTGCCAGTAGCTGTGCCAGTAGCTGTGCCAGTAGCTGCGCCAGTA
TTACCAACTCCAGCGGCAACCGCCGTTAATCAGGCACCACCAGTGTATTC
CCCACCTAAAGAGCGACGTATTGACGACCTGGTCACGGAGTTCCTAGGAA
ACAACGCACCGCCACCCCCAGAACCAACGGACCAAGACTCAGCGATGGCG
AATCCGCAAGGGTGGGTGTCAGCCCTGGGACGACTTGCTGGGCGTAGAGC
ATGGAACACTCTCGTTGATGTGGCGAGTACCATGCTCGTGGTACATCGGG
GCGGGGGAGCTCCGGGATTGACGGCTGAGCAGCATCTAGGTATCAGACAT
CTCCACCCAACTACCCACAAAACCGTCAGCAAGACGTGCCAGTAGCTGTG
CCAGTAGCTGTGCCAGTAGCTGCGCCAGTATTACCAACTCCAGCGGCAAC
CGCCGTTAATCAGGCACCACCAGTGTATTCCCCACCTAAAGAGCGACGTA
TTGACGACCTGGTCACGGAGTTCCTAGGAAACAACGCACCGCCACCCCCA
GAACCAACGGACCAAGACTCAGCGATGGCGAATCCGCAAGGGTGGGTGTC
AGCCCTGGGACGACTTGCTGGGCGTAGAGCATGGAACACTCTCGTTGATG
TGGCGAGTACCATGCTCGTGGTACATCGGGGCGGGGGAGCTCCGGGATTG
ACGGCTGAGCAGGCGATGAATGTGCGCCTCCGGCGTGCGTTAGGATTATT
GAGGCTTGGGCGAGGGGTAGAGGCAGCGGAAGCAGCGGCGGAAGCAAGAG
AGGAAGGAAGACAGACAAAGCTAGCCCCCGTAAGCGTTGCTGCTAGACTC
GCTGCTGCTGGGGCCAAGGCGACCTGTGACGGGGCAGCGGAATTGGATGC
GGTGGACGAGCTAACTACCTTGAAGGCGATGAATGTGCGCCTCCGGCGTG
CGTTAGGATTATTGAGGCTTGGGCGAGGGGTAGAGGCAGCGGAAGCAGCG
GCGGAAGCAAGAGAGGAAGGAAGACAGACAAAGCTAGCCCCCGTAAGCGT
TGCTGCTAGACTCGCTGCTGCTGGGGCCAAGGCGACCTGTGACGGGGCAG
CGGAATTGGATGCGGTGGACGAGCTAACTACCTTGAAGCTTGAATTGGAG
GGTTTAATTGCCACAGCTGCGGCAAGTTCTACCCCTCCATCGCAGCACGC
CCCTGACGGCACTAGCGGTAGACCATTACCATTAACAATTGAACAAGCAT
TAATTTGGCGACGACGGGTGATATCAACCTTAGCTAATGTCTTTGTAGCG
CGCGGTAATTGGCGATTGGCACTTGGCTTATTGGAAACCATGGGCGAAGA
AGCGGAGGAGAGCAGTGCTGCGGGGGCAGGGGGAAAGGGTGCGGGAAGTT
GTCGAGTGGAGGTGCTGTCAAGGATTGGAAGGGTTTTCTTGCAATTTGGC
GCACTTCAGGACGCCGAGCTTTACTTCCGGCGTGCGGAGGAGGTTATATT
GGTGGAAGGAGACGCGGGAGACAAAGGCCACGTGAGCGACAACGCAAGGC
TTGAATTGGAGGGTTTAATTGCCACAGCTGCGGCAAGTTCTACCCCTCCA
TCGCAGCACGCCCCTGACGGCACTAGCGGTAGACCATTACCATTAACAAT
TGAACAAGCATTAATTTGGCGACGACGGGTGATATCAACCTTAGCTAATG
TCTTTGTAGCGCGCGGTAATTGGCGATTGGCACTTGGCTTATTGGAAACC
ATGGGCGAAGAAGCGGAGGAGAGCAGTGCTGCGGGGGCAGGGGGAAAGGG
TGCGGGAAGTTGTCGAGTGGAGGTGCTGTCAAGGATTGGAAGGGTTTTCT
TGCAATTTGGCGCACTTCAGGACGCCGAGCTTTACTTCCGGCGTGCGGAG
GAGGTTATATTGGTGGAAGGAGACGCGGGAGACAAAGGCCACGTGAGCGA
CAACGCAAGGATAATGGTGAATCGTGGTCTGCTGCTGCTCTCCAAGAATG
ACTTCGTATCAGCACAGGAGAATTTTGAGGAAGCCGCAGCGGTGGCAGCT
TCTGCTCTCTCTTCTAAGCAGAAACAACGAACACATTGTATCGATGATAA
TGGTGAATCGTGGTCTGCTGCTGCTCTCCAAGAATGACTTCGTATCAGCA
CAGGAGAATTTTGAGGAAGCCGCAGCGGTGGCAGCTTCTGCTCTCTCTTC
TAAGCAGAAACAACGAACACATTGTATCGATGACGACTGGGTGATATCGG
GCGAGGGAACGAGTCTATTAGGATCCGCCCTTAACAACCTAAGCCTAGCG
ATGGTCTACTCGTGTGACGTCATGAGAGGGGTCCAGACGCTGGAAGAGTT
GATTCGGAAAAATCCGCGTCTTTACATGCAGGATGTGGTGGTGTTCAACC
TTTGTACGCTATATGATTTGTCGTTCGATGCTGTCGCAAGTGCTGCGAAG
AAGCGGACATTACAAGCAGTCGGGCAGCGTTACCGCCTGGAAGATATTGA
CCCTGCATCTTTCCGCATCAGCTGAACGACTGGGTGATATCGGGCGAGGG
AACGAGTCTATTAGGATCCGCCCTTAACAACCTAAGCCTAGCGATGGTCT
ACTCGTGTGACGTCATGAGAGGGGTCCAGACGCTGGAAGAGTTGATTCGG
AAAAATCCGCGTCTTTACATGCAGGATGTGGTGGTGTTCAACCTTTGTAC
GCTATATGATTTGTCGTTCGATGCTGTCGCAAGTGCTGCGAAGAAGCGGA
CATTACAAGCAGTCGGGCAGCGTTACCGCCTGGAAGATATTGACCCTGCA
TCTTTCCGCATCAGCTGA
back to top