mRNA_H-paniculata_contig2140.5632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A6H5JWF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF7_9PHAE) HSP 1 Score: 402 bits (1033), Expect = 2.690e-124 Identity = 243/464 (52.37%), Postives = 301/464 (64.87%), Query Frame = 3
Query: 915 PVYSPPKERRIDDLVTEFLGNNAPPPPEPTDQDSAMANPQGWVSALGRLAGRRAWNTLVDVASTMLVVHRGGGAPGLTAEQAMNVRLRRALGLLRLGRGVEAAEAAAEAREEGRQTKLAPVSVAARLAAAGAKATCDGAAELDAVDELTTLKLELEGLIATA---AASSTPPSQHAPDGTSGRPLPLTIE-----------QALIWRRRVISTLANVFVARGNWRLALGLLETMGEE-------------AEESSAAGAGGKGAGS----CRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
P PP+E+ +D LV EFL APPPPEP ++ A+ +P GWV+ALG+LA RRAW LV++A TMLV HRGGGAPGLTA+QAM++RLRRA+G+L+LGR EAAEAA G AE +A+DELT LK ELEG+IA +A + PS+ + T+ +A WRRRV+ L N+FVARGNWR+ALGLLE +GE+ + E A +GA + RVE+LSRIGRVFLQFG+L+DAE+YFRRAE G N RI+VNRGLL S+N+FV+AQENF AA AA L++K++ DD+W+ + +G LL +ALNNLSLAMVYSCDV+RGV+TLE LIRK+PRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDIDP+SFR+S
Sbjct: 271 PPRQPPQEKTLDALVLEFLSTEAPPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAEEEALDELTVLKFELEGVIAAGDGPSALAPSPSEDGMEATTXXXXXXXXXXXXXXXXXXXAEATTWRRRVMLNLVNMFVARGNWRMALGLLEDLGEDQCGERSTPACSSSSHEDVTGAAREEGARAPVDDLRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAAVGS---------NPRILVNRGLLNFSRNEFVAAQENFRNAATEAA-MLAAKEEPPDDS-DDNWLWATLDQGAGLLDTALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDPSSFRMS 723
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: D8LLE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE2_ECTSI) HSP 1 Score: 322 bits (826), Expect = 4.480e-99 Identity = 204/411 (49.64%), Postives = 249/411 (60.58%), Query Frame = 3
Query: 981 APPPPEPTDQDSAMANPQGWVSALGRLAGRRAWNTLVDVASTMLVVHRGGGAPGLTAEQAMNVRLRRALGLLRLGRGVEAAEAAAEAREEGRQTKLAPVSVAARLAAAGAKATCDGAAELDAVDELTTLKLELEGLIATAAASSTPPSQHAPDGTSGRPLPLTIEQALIWRRRVISTLANVFVARGNWRLALGLLETMGEEAEESSAAGAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
APPPPEP ++ A+ +P GWV+ALG+LA RRAW LV++A TMLV HRGGGAPGLTA+QAM++RLRRA+G+L+LGR EAAEAA C+G AE +A+DELT LK+ TAAA+ GEE +S + RVE+LSRIGRVFLQFG+L+DAE+YFRRAE V G N RI+VNRGLL S+N+FV+AQENF AA AA L++K++ DD+W+ + +G LL +ALNNLSLAMVYSCDV+RGV+TLE LIRK+PRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDID +SFR+S
Sbjct: 3 APPPPEPVNETLALGDPDGWVAALGQLAWRRAWRKLVEIAGTMLVAHRGGGAPGLTADQAMDLRLRRAMGMLKLGRAAEAAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEGEAEEEALDELTALKV-------TAAAA-------------------------------------------------------GEEGARASV--------DNVRVELLSRIGRVFLQFGSLEDAEVYFRRAEAAAAVAGS---------NPRILVNRGLLDFSRNEFVAAQENFRNAATEAA-MLAAKEEPPDGS-DDNWLWATLDQGAGLLDAALNNLSLAMVYSCDVLRGVRTLEGLIRKDPRLYMLDVVIFNLCTLYDLSFDAVASAKKKRTLQAVAQRFRLEDIDASSFRMS 332
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A6H5KFR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR3_9PHAE) HSP 1 Score: 133 bits (335), Expect = 4.440e-33 Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 3
Query: 1914 DDDWVIS--GEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRIS 2207
DD W+ + +G LL SAL NLSLAM SCDV+RGV+TL+ LIRKNPRLYM DVV+FNLCTLYDLSFDAVASA KKRTLQAV QR+RLEDID +SFR+S
Sbjct: 13 DDIWLRATLDQGAGLLDSALTNLSLAMC-SCDVLRGVRTLKGLIRKNPRLYMLDVVIFNLCTLYDLSFDAVASA-KKRTLQAVTQRFRLEDIDTSSFRMS 110
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A024G727_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G727_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.460e-21 Identity = 65/191 (34.03%), Postives = 108/191 (56.54%), Query Frame = 3
Query: 1635 RVEVLSRIGRVFLQFGALQDAELYFRRAEEVI-LVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
++ VLSRIGR+++Q G ++ AE+ F+ + + D GH ++++N+GLLLLS+++ A F + + ++ + ++ I D + E L+ +A+NN ++ +YSCDV V LE +IR P ++ +VVVFNL +LYDL +D S +K L+ + Y LE ID A+FRI
Sbjct: 562 QIIVLSRIGRIYMQLGDIESAEILFKHVSVLSEKLSSDEKQPGH----PQVLMNKGLLLLSRDNIQEAIHTFRSILHLGLAEGKAQNDKWSNTILPDEDLMLEQGELICAAVNNYAICALYSCDVHGAVTMLERMIRLCPLRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADLYNLEHIDAAAFRI 748
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: F0WJF3_9STRA (Uncharacterized protein AlNc14C121G6682 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJF3_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.560e-21 Identity = 66/191 (34.55%), Postives = 113/191 (59.16%), Query Frame = 3
Query: 1635 RVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTH-CIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
++ VLSRIGR+++Q G ++ AE+ F+ + + + +A++++N+GLLLLS+++ A E F + + +K Q ++ + DD ++ E L+ +A+NN ++ +YSCDV V LE++IR +P ++ +VVVFNL +LYDL +D S +K L+ + Y LE ID A+FRI
Sbjct: 582 QIAVLSRIGRIYMQLGDIESAEMVFQHVRHL---SEKLPSHQNQTLHAQVLMNKGLLLLSRDNVQEAIEIFSSILHLELANGQTKNSQWSNEIVLDDLLLEQE--DLICAAVNNYAICALYSCDVHGAVAMLEKMIRLSPVRFLNEVVVFNLSSLYDLIYDNANSTNRKEMLKRIADAYDLEHIDAAAFRI 767
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A448ZA12_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA12_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.420e-21 Identity = 85/282 (30.14%), Postives = 134/282 (47.52%), Query Frame = 3
Query: 1488 WRRRVISTLANVFVARGNWRLALGLLE---------TMGEEAEESSAAGAGGKGAGSCRV----------------EVLSRIGRVFLQFGALQDAELYFRRAEEV-------------ILVEGDAGDKG--HVSDNARIMVNRGLLLLSKNDFVSAQENFEEAA----AVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFR 2201
W + S LANV++ RG WRLA+G L+ T E A A +G G + E+LSR GR+ LQ G +++A F++A + +L E +G V+ A + +NRGL+ S++ + +A E+F A A +SS + R H + L A+NN SL +Y+C++ V LE L+R++P L++ + + FNLCTLY+L D+ + K+ LQ + +R+ L D+ P SFR
Sbjct: 268 WLAHLDSALANVYIRRGAWRLAIGALDRVVDLVPEATKAEVAAMLEIARSGNDGGSAIETDAEERITAFLSKTYLSEILSRRGRILLQTGGIREASEVFKQARALWTEAESMPLPPVTLLSEPFSGRTKVLRVAMPALVDINRGLVGFSESRYDAAMESFSAAVRGLRAERGVVVSSGYRAR-HWTGPAVAGCQAPSVLYTEAVNNTSLCHLYTCNMREAVLALEGLVREDPTLFLTERIAFNLCTLYELGSDSPVATRNKKVLQLIAKRFFLHDVGPESFR 548
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A7S3DRH9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRH9_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 4.230e-18 Identity = 81/273 (29.67%), Postives = 123/273 (45.05%), Query Frame = 3
Query: 1512 LANVFVARGNWRLALGLLETMGEEAEESSAA----------------GAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDK-------GHV---SDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHC-----------IDDDWVISG-----EGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
L+N+F+A+G WR+AL LE M E ++ GA + + E+ SR GR+ LQ GAL+ A+ F +A+ + A K H ++ N GLL S + A E+F ++ A +Q Q + DW+ G +L NL++A +Y+C + + +E LIRK+P + + NLCTLY+LS DA + KKRTLQ + +R+ L DI P SFR+
Sbjct: 135 LSNLFLAQGEWRMALESLERMVEFLPPAARVLWSQHNNKNNNKPVPEGAIQALVHAAQCEIWSRQGRLLLQMGALEGAQTLFEQAQSLWEDVPHAESKLLRQIPPAHCLIQQVEPQLHANLGLLYFSYQKYNLALEHFRKSLETTTLAQKQQQVQEEETKHEAYALTNPYLASDWLGGGLIAPVARHTLHAEVTTNLAVAALYTCRLHEAIHVMEGLIRKSPSEALTERSALNLCTLYELSGDAATATRKKRTLQLIAKRFFLHDIGPESFRL 407
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A0P1AQI3_PLAHL (Uncharacterized conserved protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQI3_PLAHL) HSP 1 Score: 92.0 bits (227), Expect = 2.270e-15 Identity = 73/240 (30.42%), Postives = 110/240 (45.83%), Query Frame = 3
Query: 1458 LPLTIEQALIWRRRVISTLANVFVARGNWRLALGLLETMGEEAEESSAAGAGGKGAGSCRVEVLSRIGRVFLQFGALQDAELYFRRAEEVI----LVEGDA---GDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAV 2156
L + I A W R LAN V++ + LAL + + E +V +LSR+GR+ LQ G L+ + F A +I L GD+ + + AR++ + GLL ++N A FE + A DD G ++ SA+NN ++ +Y CDV V LE++IR NPR ++ V+VFNL +LYDL FD V S +K L+ +
Sbjct: 461 LNVEISTAARWLRIAQFALANHLVSQQKFTLALRICSVIDEHYVSDQE-----------KVIILSRVGRIRLQMGDLEATQKLFDAARHLIDRLKLRSGDSPTVAAEDMAALEARLLFDDGLLFFAQNKLQEALSAFESVMYLHVKA------------DDVEADLFLGEDIVCSAVNNYAICALYCCDVKAAVAALEQMIRSNPRRFLNGVLVFNLSSLYDLLFDNVTSKNRKEMLKKI 677
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: A0A7S1U3K9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3K9_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 9.480e-15 Identity = 57/163 (34.97%), Postives = 82/163 (50.31%), Query Frame = 3
Query: 1782 IMVNRGLLLLSKNDFVSAQ---------ENFEEAAAVAAS----ALSSKQKQRTHCIDDDWVISGEGTSLLG---------SALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
+ V RG + S+ +FV AQ E ++ A V AL ++ H W +G L G +A NN+++A +Y+C + R VQ LE+LIR++P Y+ FNLCTLYDLS + + KKR LQ V + LED++ SFRI
Sbjct: 40 LSVARGTVHFSRGEFVKAQMWYAKALEGERKQQEADVNLGGLNPALGLQEGGSQHLGMGGWRAAGVTPGLAGVGFDADLVIAAANNMAIAALYTCQLNRAVQILEDLIRQDPHRYLCKETAFNLCTLYDLSCEPSVAGRKKRVLQQVALLFYLEDLNAQSFRI 202
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Match: L8H1C1_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1C1_ACACA) HSP 1 Score: 87.8 bits (216), Expect = 3.920e-14 Identity = 57/189 (30.16%), Postives = 93/189 (49.21%), Query Frame = 3
Query: 1638 VEVLSRIGRVFLQFGALQDAELYFRRAEEVILVEGDAGDKGHVSDNARIMVNRGLLLLSKNDFVSAQENFEEAAAVAASALSSKQKQRTHCIDDDWVISGEGTSLLGSALNNLSLAMVYSCDVMRGVQTLEELIRKNPRLYMQDVVVFNLCTLYDLSFDAVASAAKKRTLQAVGQRYRLEDIDPASFRI 2204
V +LS +GR+ LQ+G L AE YFR E+++ +++ +M+NRG+ + ++ + A FE + D+ W A NN ++ +Y D+ R + +LE+LI NP + DVVVFNLCTLYDL D+ S KK+ L A+ ++ +D D + ++
Sbjct: 450 VVLLSAVGRLLLQWGNLTGAERYFRDVEQLVT---------EPTNSVVVMMNRGMEYIGRDRYSDAARAFERVLELEP--------------DNVW------------AANNRAVCWLYLRDLQRSITSLEQLIAANPEANLLDVVVFNLCTLYDLESDS--SGVKKKALLAIISQFASDDFDTSGIKV 601 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2140.5632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2140.5632.1 >prot_H-paniculata_contig2140.5632.1 ID=prot_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=728bp MDDDNDQKPPAMISQEGPLRRINPPQFAGPVAFRNSGSFAQNPATATEVSback to top mRNA from alignment at H-paniculata_contig2140:13894..22606+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2140.5632.1 ID=mRNA_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8713bp|location=Sequence derived from alignment at H-paniculata_contig2140:13894..22606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2140:13894..22606+ >mRNA_H-paniculata_contig2140.5632.1 ID=mRNA_H-paniculata_contig2140.5632.1|Name=mRNA_H-paniculata_contig2140.5632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4368bp|location=Sequence derived from alignment at H-paniculata_contig2140:13894..22606+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |