mRNA_H-paniculata_contig2140.5631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2140.5631.1
Unique NamemRNA_H-paniculata_contig2140.5631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2140.5631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2140contigH-paniculata_contig2140:2105..2801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size697
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2140.5631.1prot_H-paniculata_contig2140.5631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2140 2217..2630 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.5990329-UTR-H-paniculata_contig2140:2104..22161622929576.5990329-UTR-H-paniculata_contig2140:2104..2216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 2105..2216 +
1691480921.0074074-UTR-H-paniculata_contig2140:2104..22161691480921.0074074-UTR-H-paniculata_contig2140:2104..2216Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 2105..2216 +
1622929576.625074-UTR-H-paniculata_contig2140:2630..28011622929576.625074-UTR-H-paniculata_contig2140:2630..2801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 2631..2801 +
1691480921.0240738-UTR-H-paniculata_contig2140:2630..28011691480921.0240738-UTR-H-paniculata_contig2140:2630..2801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2140 2631..2801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929576.6149113-CDS-H-paniculata_contig2140:2216..26301622929576.6149113-CDS-H-paniculata_contig2140:2216..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 2217..2630 +
1691480921.0158548-CDS-H-paniculata_contig2140:2216..26301691480921.0158548-CDS-H-paniculata_contig2140:2216..2630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2140 2217..2630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2140.5631.1

>prot_H-paniculata_contig2140.5631.1 ID=prot_H-paniculata_contig2140.5631.1|Name=mRNA_H-paniculata_contig2140.5631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MSYMYGVVTRHDGVYADPNQTRQCPTLSRGQCSTVSNVLLCCGGANVDIC
FTRACSPLSMTNTQNIQLGLTVDVRNELRQSNRVTSSQLIQANSGNLHMP
GSRQSPQIILSQSCIAALQPSFCFGQRCVLQSAHHTI*
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mRNA from alignment at H-paniculata_contig2140:2105..2801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2140.5631.1 ID=mRNA_H-paniculata_contig2140.5631.1|Name=mRNA_H-paniculata_contig2140.5631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=697bp|location=Sequence derived from alignment at H-paniculata_contig2140:2105..2801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGTCTTCCTTCCAGTTTGAATTGCTAGGCTCGCAGTTGATTTGTTCGT
GCACACCCTGCGGTTAAAACAGTACCAGCGCGAGATAAGGATCAAAATGG
TTATTTTGCGTTATGAGCTACATGTATGGTGTTGTAACGCGACACGACGG
AGTGTATGCGGACCCAAATCAAACACGACAATGTCCTACACTGTCACGAG
GTCAATGCTCAACAGTGAGCAATGTACTGCTGTGTTGTGGTGGGGCCAAC
GTTGACATTTGTTTTACTCGTGCATGCTCTCCTCTTTCCATGACCAACAC
TCAGAATATACAGCTTGGTCTGACTGTGGATGTGCGGAATGAGCTACGCC
AATCAAACCGGGTGACATCGTCGCAGCTCATCCAAGCGAACAGCGGCAAC
CTCCATATGCCAGGCAGCCGTCAGTCACCTCAGATCATTTTGTCCCAGTC
TTGCATCGCAGCATTGCAGCCTTCCTTCTGTTTCGGTCAGCGGTGCGTAC
TACAATCTGCACATCATACTATTTGACAGAGTGAAAAGCCTTTTGGAACT
GGATATATATGAACCGGCGGTTTGAGACCAAAACAAAGGTGGTGACCACC
TTGGATACATCATAAAAGAAGGATGTAACCACCCAACGTTCGTCGAGGAG
AGTCACCCTCATTTTTACATTTGGTGACATCGATAGATAACTTGTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig2140:2105..2801+

>mRNA_H-paniculata_contig2140.5631.1 ID=mRNA_H-paniculata_contig2140.5631.1|Name=mRNA_H-paniculata_contig2140.5631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig2140:2105..2801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTACATGTATGGTGTTGTAACGCGACACGACGGAGTGTATGCGGA
CCCAAATCAAACACGACAATGTCCTACACTGTCACGAGGTCAATGCTCAA
CAGTGAGCAATGTACTGCTGTGTTGTGGTGGGGCCAACGTTGACATTTGT
TTTACTCGTGCATGCTCTCCTCTTTCCATGACCAACACTCAGAATATACA
GCTTGGTCTGACTGTGGATGTGCGGAATGAGCTACGCCAATCAAACCGGG
TGACATCGTCGCAGCTCATCCAAGCGAACAGCGGCAACCTCCATATGCCA
GGCAGCCGTCAGTCACCTCAGATCATTTTGTCCCAGTCTTGCATCGCAGC
ATTGCAGCCTTCCTTCTGTTTCGGTCAGCGGTGCGTACTACAATCTGCAC
ATCATACTATTTGAATGAGCTACATGTATGGTGTTGTAACGCGACACGAC
GGAGTGTATGCGGACCCAAATCAAACACGACAATGTCCTACACTGTCACG
AGGTCAATGCTCAACAGTGAGCAATGTACTGCTGTGTTGTGGTGGGGCCA
ACGTTGACATTTGTTTTACTCGTGCATGCTCTCCTCTTTCCATGACCAAC
ACTCAGAATATACAGCTTGGTCTGACTGTGGATGTGCGGAATGAGCTACG
CCAATCAAACCGGGTGACATCGTCGCAGCTCATCCAAGCGAACAGCGGCA
ACCTCCATATGCCAGGCAGCCGTCAGTCACCTCAGATCATTTTGTCCCAG
TCTTGCATCGCAGCATTGCAGCCTTCCTTCTGTTTCGGTCAGCGGTGCGT
ACTACAATCTGCACATCATACTATTTGA
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