mRNA_H-paniculata_contig21397.5625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21397.5625.1
Unique NamemRNA_H-paniculata_contig21397.5625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21397.5625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21397contigH-paniculata_contig21397:221..2634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size359
Cds size357
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.566108-CDS-H-paniculata_contig21397:220..4391622929575.566108-CDS-H-paniculata_contig21397:220..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21397 221..439 +
1691480920.4763613-CDS-H-paniculata_contig21397:220..4391691480920.4763613-CDS-H-paniculata_contig21397:220..439Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21397 221..439 +
1622929575.583045-CDS-H-paniculata_contig21397:2496..26341622929575.583045-CDS-H-paniculata_contig21397:2496..2634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21397 2497..2634 +
1691480920.486439-CDS-H-paniculata_contig21397:2496..26341691480920.486439-CDS-H-paniculata_contig21397:2496..2634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21397 2497..2634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21397.5625.1prot_H-paniculata_contig21397.5625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21397 221..2634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21397.5625.1

>prot_H-paniculata_contig21397.5625.1 ID=prot_H-paniculata_contig21397.5625.1|Name=mRNA_H-paniculata_contig21397.5625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MVCCFLSSTLLAWASRVGVSPMAYRPLVFAMLSSLARQSSAFSPTRSLGT
LWRGQQRALSPCVKRARASAAIAIWQHNGVGLLNGRLRMSTAAGGGGRGG
GGGDGKGRPYYVTTPIYYV
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mRNA from alignment at H-paniculata_contig21397:221..2634+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21397.5625.1 ID=mRNA_H-paniculata_contig21397.5625.1|Name=mRNA_H-paniculata_contig21397.5625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2414bp|location=Sequence derived from alignment at H-paniculata_contig21397:221..2634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCTGCTTCCTGTCCTCCACGTTGCTTGCCTGGGCAAGCCGTGT
CGGTGTCTCTCCGATGGCGTACCGACCGCTGGTGTTTGCAATGCTCTCGT
CCTTAGCGCGGCAGTCATCGGCATTTTCTCCTACTAGATCCCTAGGCACG
CTGTGGAGAGGGCAGCAACGAGCACTGTCCCCGTGCGTAAAACGCGCAAG
AGCATCAGCTGCTATCGCAGTGAGTACAATCTACGTCTAGCACAGGCGAT
ATGCACCGTATGAAACTGCGACACAGCATCCGTCGGTGCATCGATTATCA
AGCTCTATCATCACGCATAGTTGGGTGCAGAGAACTTTAGTTAGCCATTG
ACGTAGTGTATGGATGTGCTATCGAATACTGTAATGTGGTCATGCCGCAC
ACTCATGTGTGTCGTGTGTTGACGTTGTTGACATGTATAGTATGAACGAA
CGTATGAGAAGTAGTGTCCAAATTGTCTGTACTCCAGTCCGGCCACAGAT
CCTGTGGCAGCTGCCGATGTGTGTACCTTTGATCCTGGTAGGCGGTTTTT
GCTCCCAGCATTGCAAAATTGTAAATGATTTGAGAAGGTTTGATCAGCTA
CAAGATCAGCTCATCATGTTGATCATGACACTTTTTTTTTTTTCGCCGCG
AAATCAGTTCGCCTGTCGCAACCCCCAGTTCGTGGCCAATCTGAAGGAAA
TTGAGATATATGACTACTGGTACTGCATTAGGTGTGTCCACTGTTTTGTC
CGATACCAAGCGGGGGGTATCGATACATGTATTTTACGACTTTGTTCTCT
GCCCTTGAATTTGTACCACTCAGTGCAACTGAAACATCAAGAGAATATGG
CCCTTGTACCTTGCCTACCCTGTTATATTTAGAGGCAAAAGTATCACGGT
TATACCCCTATCGTGTGGGGAGCTCGCTACCCTGGCCGGCCTTGCGGCGA
GCAAAATTCAACCGGACCAACCAGCTACGGGCCAAATTCCCAGAAAGCCG
ATCAGTAACCACGATGGCTACTGACGTGTCCGTGGCCAACCGGCCGGTCA
ACATCGACAGTTGTGCCGGACAGGTTACTGGGCAGGTAGTCCTCGGCTTA
ATAAGTGACGTCGGAAGAATTCGTTCCGTTGGTGAAAAGGTTCCGTTTCA
GCAATGTTTTGCTACTATTGGGGCTACTTTTATTCGGTTTGGGTTAATTA
TGTTACTGTTGGGGAATGTTGTTGTTGGTTAGAGACGTTGAACTCTATGA
GGCAGTCCGGTGTCACTGGCCTGGCCAATTAGTCACCGGCAAAATTGCCA
CCGGCCCAAGCAGTCATCATGGCGAAGAATTCCTCGTTACAAACGTCCAG
TATTTTGGAGGGCTTGGACAAGATGAGGGGCCATTGCTTATTTCAGCTCC
ATCTGCAGCTTTGCACAGTGAAGTAAGATTTGATACTTCGCCCGAACCGA
GCGGAACAGAGCTCATCCCAGAAGTTGCAGTGATGATGGCACTCCTCGGA
CGTGCAAGCACGTGACACTCATTTTTTCATCCTTGTCGTGCGCAACAAGC
ACACCACATGCAGATGTTCCGCGTAAACACGGACAACAACAAAGCAGCTA
TACGAATAATCCATCAATTTCACAAAACGTACAAAGATGAGTTATTCCAA
TGCTATTTTCACGCTGGCGACACCGATTTATAAGTCATCTGCTTCTTCGC
CCGAACATCAAGAGCTCAAACCCGAGCAATTACTTGAAAAAAAAGTAAAG
CGTCCACCAAAAAGACGCAGCTGTATTTGGGGACGAAAGGAGAAAATTCA
CAACCCGTGTGAAGGAAGAGACTGCAATACCTCGCTGCGAGCCGATTGAT
TCTCGGCTACCGCTAAACTGCAGTTTTCCAAAAGGAAGACTCATCAAAAG
GAAGGGGTAATGTAGTGGCCACCTTAAAAATATGTTAAAATTGATAATGA
TCATCTAGTGTGGATCGAGGACAGTTATCATCATGCTCACAAAAGCTGGG
GGGGGGGGGGGAATTGTCATATAGTAAGGGCCAAAAATTCAACTTTATAC
GATCGACACGTTGACCTCGAACTGCCGCCACCGCCGCCTCGCACGCTTTA
GCTCATTTTCTTACTTGAATTCTGAGCTGTTCTTGCTGATCGCGGCTAGA
ACCTCGGCGAATTTCACGCCCCGAGTTTATATCTTTAGTTACGTATTTCC
CCCCCCCCCATCTTGTATTCAGTTTCAATGGCATCCACCCTATCACGCAT
GTGGTCGGTTGCCTGTGTGCGCACAGATATGGCAACACAACGGAGTCGGT
CTGCTTAACGGCAGGCTCCGTATGTCTACCGCCGCCGGGGGCGGGGGGAG
GGGAGGTGGTGGAGGGGACGGTAAGGGCCGGCCTTACTACGTCACGACTC
CTATTTACTACGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig21397:221..2634+

>mRNA_H-paniculata_contig21397.5625.1 ID=mRNA_H-paniculata_contig21397.5625.1|Name=mRNA_H-paniculata_contig21397.5625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig21397:221..2634+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTGCTGCTTCCTGTCCTCCACGTTGCTTGCCTGGGCAAGCCGTGT
CGGTGTCTCTCCGATGGCGTACCGACCGCTGGTGTTTGCAATGCTCTCGT
CCTTAGCGCGGCAGTCATCGGCATTTTCTCCTACTAGATCCCTAGGCACG
CTGTGGAGAGGGCAGCAACGAGCACTGTCCCCGTGCGTAAAACGCGCAAG
AGCATCAGCTGCTATCGCAATGGTGTGCTGCTTCCTGTCCTCCACGTTGC
TTGCCTGGGCAAGCCGTGTCGGTGTCTCTCCGATGGCGTACCGACCGCTG
GTGTTTGCAATGCTCTCGTCCTTAGCGCGGCAGTCATCGGCATTTTCTCC
TACTAGATCCCTAGGCACGCTGTGGAGAGGGCAGCAACGAGCACTGTCCC
CGTGCGTAAAACGCGCAAGAGCATCAGCTGCTATCGCAATATGGCAACAC
AACGGAGTCGGTCTGCTTAACGGCAGGCTCCGTATGTCTACCGCCGCCGG
GGGCGGGGGGAGGGGAGGTGGTGGAGGGGACGGTAAGGGCCGGCCTTACT
ACGTCACGACTCCTATTTACTACGTGATATGGCAACACAACGGAGTCGGT
CTGCTTAACGGCAGGCTCCGTATGTCTACCGCCGCCGGGGGCGGGGGGAG
GGGAGGTGGTGGAGGGGACGGTAAGGGCCGGCCTTACTACGTCACGACTC
CTATTTACTACGTG
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