mRNA_H-paniculata_contig21381.5622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21381.5622.1
Unique NamemRNA_H-paniculata_contig21381.5622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.560e-18
Identity = 88/290 (30.34%), Postives = 139/290 (47.93%), Query Frame = 3
Query:  138 GKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT-----ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            GKS +S  +L+  +ER FKR+R  G++ TRA       ++ R +R + R W++R+ ++ + F  + S        LTS   S         N   I  +  A+ E      +  LP +  +G+   A+ DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D    T     A ++   +V  +    + E+SL+R+     A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+ +++  ++ QKR+
Sbjct:  120 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGS---------NEQHIRRIEDAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQSKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDESYTTIPAVKAAEAKRFEVLIEASRRRHESSLLRIA----ARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRL 392          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: D8LIV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.390e-15
Identity = 95/332 (28.61%), Postives = 147/332 (44.28%), Query Frame = 3
Query:   18 RTSWEQGYKGTQVDLSPPSVQQRSSTSASTAGSAAAKLPEGKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASM-LVNDRGKRCLTRAWTRRQEEVAKKFAAQ--------KSLTSCCASPKRKR*ERGNMNLIFWLRKAIMED------VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT--ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVN---YKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            R SWE   +G     S   +   S    +T       LP GKS +S   L++SQ+  FKR+R  G++ TRA       +   R +R + R W+RR+ ++ K F  +        K LT            R N   +  L  A+ E+      +   P   +DG+    +A A   G VS           Q  +L    +   +V   E  RD     +L    +A + LA +   T +   + + K +    EASL+R   ++L + A   +     Y  ST L W+R FRK GG  + D RGVHE +WI+SEEDL+  +L  +++Q+R+
Sbjct:   66 RLSWEASQRGKPCHPSKEDIDSASVAVDTT-------LPAGKSPNSIGILNSSQQPRFKRQRLSGSHATRAQFATQQHMFTSRQERSMKRGWSRRETKLRKDFDKRGGYLRGRIKDLTEKT---------RTNTQHVQRLETALGENKLASLLIPVPPSPVEDGE----DAGAGLKGNVS---------EKQINRLWQQGYCTLKVLVAELARDT---KQLVLTVEANEVLAGSKGVTDAAVREGEAKRFELLNEASLVRYDASLLRIAANVVQTGSHPYAVSTILRWLRDFRKQGG-FRRDSRGVHEPDWIMSEEDLKGQLLTWMRTQQRL 364          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.290e-15
Identity = 84/283 (29.68%), Postives = 134/283 (47.35%), Query Frame = 3
Query:  162 RLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT------ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            +L+  +ER FKR+R  G++ TRA       ++ R +R + R W++RQ +  + F  + S        LTS   S         N   I  + +A+ E      +  LP +  +G+   A+ DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D    T      A    +E ++E     + E+SL+R+     A V  A    Y +ST L W+R FR  GG  K D R VHER+WI+S+EDL+ +++  +++QKR+
Sbjct:   13 KLNAVEERKFKRQRLAGSDATRAGFTQESTLSRRERRSVARGWSKRQGKFRRDFDKRGSYLGNRIYELTSQIES---------NEQHIRRIEEAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESYTTIPAVKAAEAKRFELLNEAS-RRRHESSLLRIA----ARVNSAGSRVYAASTVLGWLRDFRGHGG-FKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRL 277          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.460e-15
Identity = 81/277 (29.24%), Postives = 129/277 (46.57%), Query Frame = 3
Query:  141 KSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAI---NQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            KS +S  +L+  +ER FKR+R  G++ T A       ++ R +  + R W+ R+ ++ + F  + S                  N I+     I  +   + +      +EEA A+   A  ++P LPP  +   + E +   A+     NQ  E E  RD+  L     AK  +D   +  T    +  + K +    EAS  R   ++L   A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+  ++  +++QKR+
Sbjct:  119 KSRNSLGKLNAVEERKFKRQRLAGSDATSAGLTLDSTLSRRERYSVARGWSNREGKLRRDFDKRGSYLG---------------NRIYVQTSQIESNEQHIRR------IEEAMAEQDLASLLAP-LPPSPIE--RNEDVDARAYTEGEDNQYKEEERKRDLRQLELTQQAKSLSDE--SYMTIPAVKAAEAKRFELLIEASRPRHESSLLQIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDQLIKWMRTQKRL 368          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.290e-14
Identity = 78/273 (28.57%), Postives = 129/273 (47.25%), Query Frame = 3
Query:  165 LSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEAD--ARFAGEVSPPLPPPQV---TAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT-----ATQSTWEKVDEKVWNYKKEASLIRLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            L+  +ER FKR+R  G++ TRA       ++ R +R + R W++R+  + + F  + S                  N I+ L   I  +   + +      +EEA A+  +R    +SPP P  ++   T  +  + R    +   V + E  RD+  L     AK  +D    T     A ++   ++  +    + E+SL R+     A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+ +++  +++QKR+
Sbjct:   11 LNAVEERKFKRQRLAGSDATRAGFTLETTLSRRERRSVARGWSKRKGRLRRDFDKRGSYLG---------------NRIYELTSQIESNEHHIRR------IEEAMAEQTSRVFSPLSPPRPSKEMQTWTHGRVPRARTTRHSALTVLKVERKRDLRQLELAQQAKSLSDESYTTIPAVKAAEAKRLELLNEALRRRHESSLWRIA----ARVNSAGLRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRL 257          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 1.690e-13
Identity = 93/339 (27.43%), Postives = 148/339 (43.66%), Query Frame = 3
Query:  138 GKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAAT------ATQSTWEKVDEKVWNYKKEASLIRL--------------------------------RFTML----------AMVAEAAEVN------YKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            GKS +S  +L+  +ER FKR+R  G++ TRA       ++ R +R + R W++R+ ++ + F  + S        LTS   S         N   I  + +A+ E      +  LP +  +G+   AE DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D    T      A    +E ++E     + E+SL+R+                                RF +L          +++  AA VN      Y +ST L W+R FR  GG  K D RGVHER+WI+SEED + +++  +++QKR+
Sbjct:  110 GKSRNSLGKLNAVEERNFKRQRLAGSDATRAGFTLESTLSRRERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIES---------NEQHIRRIEEAMAEQDLASLLAPLPPSPIEGN---AEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKSLSDESYTTIPAVKAAEAKRFELLNEAS-RRRHESSLLRIAARVNSAGSRVYAASTILVXTTIPAVKAAEAKRFDLLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRL 434          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.370e-13
Identity = 84/281 (29.89%), Postives = 127/281 (45.20%), Query Frame = 3
Query:  126 KLPEGKSHHSFYRLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCL--TRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMEDVTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            KL + KS  S  +L+  +ER FKR+R  G++ TRA       ++ R +R +       RR E+      A++ L S  A                            LP +  +G+   AE DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D   +  T    +  + K +    EAS +R   ++L   A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+ +++  +++QKR+
Sbjct:   76 KLYKRKSRDSLGKLNAVEERNFKRQRLAGSDATRAGFTPESTLSRRERRSIESNEQHIRRIEDAM----AEQDLASLLAP---------------------------LPPSPIEGN---AEVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGS-KRDSRGVHERDWIMSEEDLKDELVMWMRTQKRL 319          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.490e-12
Identity = 78/272 (28.68%), Postives = 124/272 (45.59%), Query Frame = 3
Query:  162 RLSTSQERAFKRRRKEGANVTRAD*MASMLVNDRGKRCLTRAWTRRQEEVAKKFAAQKSLTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLI---RLRFTMLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            +L+  +ER FKR R  G++ TRA       ++ R +  + R W++R+ ++ + F  + S           R E  N   I  +  A+ E      +  LP +  +G+   A+ DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D    T      +  + K +    EAS       R  + A V  A    Y +ST L W+R  R  GG  K D RGVHE +WI+SEEDL+ +++  +++QKR+
Sbjct:  111 KLNAVEERKFKRLRLAGSDATRAGFTLKSTLSRRERCLVARVWSKREGKLRRDFDKRGSYLGNRIYELTSRSE-SNEQHIRRIEAAMAEQDLASLLAPLPPSPIEGN---ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLELTQQAKALSDEPYTTIPAV--KAAEAKRFELLNEASRRPHQSSRLRIAARVNSAGSRVYAASTILGWLRDLRGHGG-FKRDSRGVHEWDWIMSEEDLKDELIKWMRTQKRL 375          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.380e-10
Identity = 55/162 (33.95%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  477 AEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDMLGGLKSQKRV 953
            A+ DAR   E        +V+A Q  +L     +   V + E  RD+  L     AK  +D   +  T    +  + K +    EAS +R   ++L   A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+ +++  +++QKR+
Sbjct:  290 ADVDARACTEGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRL 448          
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Match: A0A6H5JTS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 6.240e-10
Identity = 70/238 (29.41%), Postives = 108/238 (45.38%), Query Frame = 3
Query:  261 RGKRCLTRAWTRRQEEVAKKFAAQKS--------LTSCCASPKRKR*ERGNMNLIFWLRKAIMED-----VTKLPQADDDGDVEEAEADARFAGEVSPPLPPPQVTAAQREQLRI*AFAINQVSEHEHDRDILSLSELGAAKQAADALAATATQSTWEKVDEKVWNYKKEASLIRLRFTML---AMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEEDLELDML 926
            R +R + R W++R+ ++ + F  + S        LTS   S         N   I  +  A+ E      +  LP +  +G+   AE DAR   +        +V+A Q  +L     +   V + E  RD+  L     AK  +D   +  T    +  + K +    EAS +R   ++L   A V  A    Y +ST L W+R FR  GG  K D RGVHER+WI+SEEDL+ +++
Sbjct:   17 RERRSVARGWSKREGKLRRDFDKRGSYLGNRIYELTSQIGS---------NEQHIRRIEDAMAEQDLASLLAPLPPSPIEGN---AEVDARACTDGEDNQYKEEVSATQANRLWYQGHSALTVLKEERKRDLRQLQLTQQAKSLSDE--SYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGG-FKRDSRGVHERDWIMSEEDLKDELI 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21381.5622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JUI4_9PHAE3.560e-1830.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV1_ECTSI1.390e-1528.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI16_9PHAE2.290e-1529.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN6_9PHAE9.460e-1529.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE3.290e-1428.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7P7_9PHAE1.690e-1327.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE3.370e-1329.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX8_9PHAE2.490e-1228.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE1.380e-1033.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTS6_9PHAE6.240e-1029.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21381contigH-paniculata_contig21381:1370..2897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1325
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21381.5622.1prot_H-paniculata_contig21381.5622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21381 2331..2528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.2140725-UTR-H-paniculata_contig21381:1369..15071622929575.2140725-UTR-H-paniculata_contig21381:1369..1507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 1370..1507 +
1691480920.2992449-UTR-H-paniculata_contig21381:1369..15071691480920.2992449-UTR-H-paniculata_contig21381:1369..1507Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 1370..1507 +
1622929575.2267287-UTR-H-paniculata_contig21381:1710..23301622929575.2267287-UTR-H-paniculata_contig21381:1710..2330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 1711..2330 +
1691480920.3099072-UTR-H-paniculata_contig21381:1710..23301691480920.3099072-UTR-H-paniculata_contig21381:1710..2330Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 1711..2330 +
1622929575.2675912-UTR-H-paniculata_contig21381:2528..28971622929575.2675912-UTR-H-paniculata_contig21381:2528..2897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 2529..2897 +
1691480920.3262775-UTR-H-paniculata_contig21381:2528..28971691480920.3262775-UTR-H-paniculata_contig21381:2528..2897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21381 2529..2897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929575.2417903-CDS-H-paniculata_contig21381:2330..25281622929575.2417903-CDS-H-paniculata_contig21381:2330..2528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21381 2331..2528 +
1691480920.3178747-CDS-H-paniculata_contig21381:2330..25281691480920.3178747-CDS-H-paniculata_contig21381:2330..2528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21381 2331..2528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21381.5622.1

>prot_H-paniculata_contig21381.5622.1 ID=prot_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MLAMVAEAAEVNYKSSTTLSWVRRFRKVGGCLKHDGRGVHEREWILSEED
LELDMLGGLKSQKRV*
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mRNA from alignment at H-paniculata_contig21381:1370..2897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21381.5622.1 ID=mRNA_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1528bp|location=Sequence derived from alignment at H-paniculata_contig21381:1370..2897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACCAAAGAGTGGTGGCGGACGAGTTGGGAGCAGGGGTACAAGGGTACG CAGGTTGACCTTTCCCCTCCTTCAGTTCAACAGCGCAGCTCGACCTCCGC GTCAACAGCAGGTTCGGCAGCTGCGAAGTTACCCGAAGGCGAGTTGCACC AGGTTCCACTGCTGTTGTCTTGCTGTTTTTGAGGCTGTCTGTTTTCATTT GTACTATTGGTTGTAGTGTTGCTTTGCACTGCTGTATCGTATGCACGTAC TTGCAGTGCTGCTACTTCGACACGAATGCTGTTTGTGTATGTCTTGACTG CTGTATACCCCGTCCTCCCTGTTGCTTCCTTTATCCAACAGGGAAGTCTC ACCACAGCTTTTATCGACTGAGCACCTCACAGGAGAGGGCGTTCAAAAGA CGCCGCAAGGAAGGGGCTAATGTGACACGTGCAGATTGAATGGCGTCGAT GCTCGTGAACGATCGAGGGAAGCGGTGCCTCACGCGTGCGTGGACGAGGC GCCAGGAGGAAGTGGCCAAGAAGTTCGCGGCACAGAAGTCTCTTACCTCG TGTTGCGCGTCGCCTAAAAGAAAAAGATAAGAGCGGGGGAACATGAACCT GATCTTCTGGCTTCGAAAGGCAATAATGGAAGACGTCACCAAGCTGCCAC AAGCCGATGATGACGGTGATGTCGAGGAAGCGGAGGCCGACGCACGCTTT GCGGGCGAGGTCTCGCCACCGCTGCCGCCCCCGCAGGTCACCGCGGCCCA GAGGGAACAGTTGCGCATTTAGGCATTCGCCATCAACCAGGTGTCGGAGC ATGAACACGATCGGGATATACTTTCTCTAAGCGAGCTCGGAGCTGCGAAG CAAGCCGCCGATGCCTTGGCGGCCACCGCGACACAGTCCACCTGGGAAAA GGTAGACGAAAAGGTGTGGAACTACAAGAAGGAAGCTTCGCTCATTCGTC TAAGGTTCACGATGCTGGCGATGGTCGCGGAAGCCGCGGAGGTGAATTAC AAGTCGAGTACGACTCTCTCGTGGGTACGTAGGTTTCGGAAAGTCGGCGG ATGTTTGAAGCACGACGGCCGAGGTGTACACGAGAGGGAGTGGATCCTGT CCGAGGAGGATCTTGAGCTCGATATGTTAGGGGGGCTCAAAAGCCAGAAG CGCGTATGATCGATAAGATGAAGAAGAAGTGCAAGGCTCACCACAACATC CTTGACAGGGAGCCTGGCTTCATCGACAAGCAATACGAGTAGGAGAATAA CCAGTACTAGTAGTCGCACGACTCGTATCGTGAGCACCAGTGATAGGGAG GGGCGGACAATGGATAGAAATGCATGGGCAGGCCTACCGAGTGTGGTGTT CTATATTATGTCACCGGATGAGTACGACGTACGAGTAGAGTGGCGGTTCG CTTCGGACGGTCAACTAGTAGTGGTGGCACTGGAAATTTAATGTTAATTG TCATTTGGCAGGGTGCCATACTGTACATGTTACATCTTCATTCGCTGGTT TACACGTACTTGTACTGCGGTAGCCTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21381:1370..2897+

>mRNA_H-paniculata_contig21381.5622.1 ID=mRNA_H-paniculata_contig21381.5622.1|Name=mRNA_H-paniculata_contig21381.5622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig21381:1370..2897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGCGATGGTCGCGGAAGCCGCGGAGGTGAATTACAAGTCGAGTAC
GACTCTCTCGTGGGTACGTAGGTTTCGGAAAGTCGGCGGATGTTTGAAGC
ACGACGGCCGAGGTGTACACGAGAGGGAGTGGATCCTGTCCGAGGAGGAT
CTTGAGCTCGATATGTTAGGGGGGCTCAAAAGCCAGAAGCGCGTATGAAT
GCTGGCGATGGTCGCGGAAGCCGCGGAGGTGAATTACAAGTCGAGTACGA
CTCTCTCGTGGGTACGTAGGTTTCGGAAAGTCGGCGGATGTTTGAAGCAC
GACGGCCGAGGTGTACACGAGAGGGAGTGGATCCTGTCCGAGGAGGATCT
TGAGCTCGATATGTTAGGGGGGCTCAAAAGCCAGAAGCGCGTATGA
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