mRNA_H-paniculata_contig21377.5618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21377.5618.1
Unique NamemRNA_H-paniculata_contig21377.5618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 8.110e-19
Identity = 43/71 (60.56%), Postives = 50/71 (70.42%), Query Frame = 2 
Query:  140 CVVILMQWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            C    +QW  L+ PSK P  SE+T +S+ LESVRKD ECFF  LKG FRILKL + YR K DIDN+F TCC
Sbjct:    5 CCTQQLQWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFDILKGRFRILKLRLGYRSKEDIDNIFSTCC 75
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.730e-18
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  158 QWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            +W  L+PPSK P+   +  +SK LESVRKD ECFFG +KG FRILKLSI Y ++ DIDNVFFTCC
Sbjct:   93 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGLFRILKLSIPYHKQEDIDNVFFTCC 157
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.220e-18
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:  143 VVILMQWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            + I ++W  L+ PSK P  SE+T +S+ LESVRKD ECFFG LKG FRILKL + YR K DIDN+F+TCC
Sbjct:  327 IPIELKWVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKKDIDNIFYTCC 396
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 7.170e-18
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 2 
Query:  161 WAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            W  L+ PSK P  SE+T +S+ LESVRKD ECFFG LKG FRILKL + YR K DIDN+F TCC
Sbjct:    2 WVTLIAPSKYPANSEDTAFSRTLESVRKDVECFFGILKGRFRILKLRLGYRSKEDIDNIFSTCC 65
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.000e-17
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  158 QWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            +W  L+PPSK P+   +  +SK LESVRKD ECFFG +KG FRILKLSI Y ++ DIDNVFFTCC
Sbjct:  334 KWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCC 398
[Close]
BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.730e-16
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 2 
Query:  107 KLSSTHFTD*KCVVIL----MQWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            K++ T  T   C +I+     +W  L+ PSK P  +++T +S+ LESVRKD ECFFG LKG FRILKL + Y ++  IDN+FFTCC
Sbjct:   72 KVNGTERTRRGCFLIMDNWYHEWVTLIAPSKYPQSNKDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCC 157
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BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JZL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZL5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.760e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 2 
Query:  161 WAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            W +L+ PSK PL   +  + K LESVRKD ECFFG LKG FRILKL++ Y+ +  IDNVFFTCC
Sbjct:   18 WQILIEPSKYPLSENDLLFLKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCC 81
[Close]
BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 1.870e-16
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 2 
Query:  158 QWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            +W +L+ PSK PL  ++  +SK LESVRKD ECFFG LKG FRILKL++ Y+ +  IDNVFFTCC
Sbjct:  181 KWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCC 245
[Close]
BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5JXJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXJ4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.690e-16
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:  173 MPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            M P+K PL   +  +SK LESVRKD ECFFG LKG FRILKL + Y E+  IDNVFFTCC
Sbjct:    1 MEPTKYPLSENDILFSKRLESVRKDVECFFGILKGRFRILKLVMAYHEQERIDNVFFTCC 60
[Close]
BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 7.290e-16
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 2 
Query:  149 ILMQWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSILYREKGDIDNVFFTCC 352
            +L+ W  L+ PSK P  +E+T +S+ LESVRKD ECFFG LKG FRILKL + Y ++  IDN+FFTCC
Sbjct:  411 VLIWWVTLIAPSKYPQSNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCC 478
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21377.5618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L135_9PHAE8.110e-1960.56Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE3.730e-1864.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K5C1_9PHAE6.220e-1861.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMK5_9PHAE7.170e-1865.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE2.000e-1764.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE1.730e-1650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZL5_9PHAE1.760e-1660.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX7_9PHAE1.870e-1661.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JXJ4_9PHAE5.690e-1665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE7.290e-1658.82DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21377contigH-paniculata_contig21377:2..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size982
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21377.5618.1prot_H-paniculata_contig21377.5618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21377 1003..1368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929574.5854292-UTR-H-paniculata_contig21377:1..1401622929574.5854292-UTR-H-paniculata_contig21377:1..140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 2..140 +
1691480920.0091524-UTR-H-paniculata_contig21377:1..1401691480920.0091524-UTR-H-paniculata_contig21377:1..140Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 2..140 +
1622929574.59784-UTR-H-paniculata_contig21377:987..10021622929574.59784-UTR-H-paniculata_contig21377:987..1002Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 988..1002 +
1691480920.020923-UTR-H-paniculata_contig21377:987..10021691480920.020923-UTR-H-paniculata_contig21377:987..1002Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 988..1002 +
1622929574.626821-UTR-H-paniculata_contig21377:1368..18301622929574.626821-UTR-H-paniculata_contig21377:1368..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 1369..1830 +
1691480920.0402422-UTR-H-paniculata_contig21377:1368..18301691480920.0402422-UTR-H-paniculata_contig21377:1368..1830Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21377 1369..1830 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929574.6151042-CDS-H-paniculata_contig21377:1002..13681622929574.6151042-CDS-H-paniculata_contig21377:1002..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21377 1003..1368 +
1691480920.0309339-CDS-H-paniculata_contig21377:1002..13681691480920.0309339-CDS-H-paniculata_contig21377:1002..1368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21377 1003..1368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21377.5618.1

>prot_H-paniculata_contig21377.5618.1 ID=prot_H-paniculata_contig21377.5618.1|Name=mRNA_H-paniculata_contig21377.5618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MQWAMLMPPSKRPLCSEETRWSKMLESVRKDAECFFGFLKGHFRILKLSI
LYREKGDIDNVFFTCCSSTKCCTLTMDWTYWRRTWTGRGWTVCTTPKLLN
LRRTTAGLYSGASSVTTMYKK*
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mRNA from alignment at H-paniculata_contig21377:2..1830+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21377.5618.1 ID=mRNA_H-paniculata_contig21377.5618.1|Name=mRNA_H-paniculata_contig21377.5618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1829bp|location=Sequence derived from alignment at H-paniculata_contig21377:2..1830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATGCATATAAATATCATGTAACTACAATGGACAACAACCAGGCTTCTT
TTATTTGCTACTCGGAGCCCTTCCTTTCCTCTCGTCACTACGTTCCACAC
TGTTATAAGCTCAGCTCTACCCACTTTACCGATTAGAAGGTACGTCGATG
AGTCTATGCTTGACATCTGTACAACGCTTATCGAGGCACTGGTTCCGTGG
TGGTCTTGTTGCTGTAGCGCGTGTATATTTTGGAGTGTAGCACGGCATCC
GTACGGTACCTGTGCCGCACATTACCACTCCGATGACAAACATTTGGTCT
GTCTGTACTATGAAGAAGATAATAATTGAAGGTAATTCAAATCGACCGAA
CACTTTCGATCACATCTTTGTATCTTCCTCATACTGTACTGCATTGTACT
GTCTTCAGTGCACTGCACCGTACTGGACTGACTGCACTTTTGCACTGTAC
AGTAGTACGTTGTATTCATGTCCGCTAACCTGTGCCTGGAGTTCGTGTCT
GTACGATGTAATGCAACTACACAACCTCACTGCACAACCCCTACTCCCCT
GCACAACATCGCTGACAGTCTACAGTATGGTGTGATATACTCACGAAAAA
TCTCTACCTGCGTTCCCCTCGAATACTATTAGTATATCACAGAGATTACT
CTGTAGTGTTAGCTCTTCAGACGATGGCCGTTATCATCTCCCTCCATAAC
ACTGTCACACTGTTCGGGGTTGTATGCTGCGACTATTCCCTGAACTGTAG
ACAGCCTATGACTTCGTGGAACATGGGTAGAATACGCCGTGAAGTATGTG
ATGTTACCCTTGCACCGTACGTGCATCACCTTGTGGAGATATGATTTTAA
CTGGAGTTTTTTTACATCATAAGATATAGCCTTGTTAGTGCGCCTGTCGA
ACGGGGTGATAACAGCCCCCGCGTGCGAACCCAACATGAATCAATGCCAA
ATCCATGCAAACATAACTTAGCGTCGCCCCCTCCAGTGCGTTGTCATACT
TATGCAGTGGGCTATGCTCATGCCCCCGTCGAAGCGCCCCTTATGCAGTG
AGGAGACCCGCTGGAGCAAGATGTTGGAGAGCGTGCGAAAGGATGCGGAG
TGCTTCTTCGGCTTCCTGAAGGGTCACTTTAGAATCCTCAAGCTTTCCAT
CCTCTACCGCGAAAAAGGTGACATCGACAACGTCTTCTTCACATGCTGCT
CCTCCACAAAATGCTGCACGCTCACGATGGATTGGACGTACTGGAGGAGG
ACGTGGACTGGAAGGGGGTGGACGGTCTGCACGACCCCAAAGTTGCTGAA
CCTGAGACGGACCACAGCCGGGTTGTACTCAGGCGCAAGTTCGGTAACTA
CGATGTACAAGAAGTAGAGTCGGAGCACCACGTGCTGAAGAAAAAATTGA
TCGCACACTACTCGTATCGCAGGAAGATAAACGACATTACATGGCTTAGC
AGGTAGGCGTTGTGGTGATATCCGTCCAGATAATGGTCCACACGCCCGTT
GGCATTGTCGAAAATGCAGGAGTGTTTGCTGTGGTCGGTTATACATTCAA
AAAGCGACTAGTGGCGTAGATTTAGCACACTGGAGAGGATATCCATGTCG
TCCTCCAAGTATGGTTGATACCGGCTGGGCTCGGCCGGTGAAGAATTTAC
TCCTAGTCCTTTTTCTTTCATGTTTAGCTGAGTTTCACGAGTTTGAAGTT
GAAATATTGACAGAGGCTTTCGAGTGCGTTCACAGCGCTGCAGAGAGGAT
GTATTTCTTGATTTTTTCTCCAATAGTTGAGGGCCAACATGTAGTCCACA
TCTTTCTGCAAAGAACCATAAAAGATTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig21377:2..1830+

>mRNA_H-paniculata_contig21377.5618.1 ID=mRNA_H-paniculata_contig21377.5618.1|Name=mRNA_H-paniculata_contig21377.5618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig21377:2..1830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGTGGGCTATGCTCATGCCCCCGTCGAAGCGCCCCTTATGCAGTGA
GGAGACCCGCTGGAGCAAGATGTTGGAGAGCGTGCGAAAGGATGCGGAGT
GCTTCTTCGGCTTCCTGAAGGGTCACTTTAGAATCCTCAAGCTTTCCATC
CTCTACCGCGAAAAAGGTGACATCGACAACGTCTTCTTCACATGCTGCTC
CTCCACAAAATGCTGCACGCTCACGATGGATTGGACGTACTGGAGGAGGA
CGTGGACTGGAAGGGGGTGGACGGTCTGCACGACCCCAAAGTTGCTGAAC
CTGAGACGGACCACAGCCGGGTTGTACTCAGGCGCAAGTTCGGTAACTAC
GATGTACAAGAAGTAGATGCAGTGGGCTATGCTCATGCCCCCGTCGAAGC
GCCCCTTATGCAGTGAGGAGACCCGCTGGAGCAAGATGTTGGAGAGCGTG
CGAAAGGATGCGGAGTGCTTCTTCGGCTTCCTGAAGGGTCACTTTAGAAT
CCTCAAGCTTTCCATCCTCTACCGCGAAAAAGGTGACATCGACAACGTCT
TCTTCACATGCTGCTCCTCCACAAAATGCTGCACGCTCACGATGGATTGG
ACGTACTGGAGGAGGACGTGGACTGGAAGGGGGTGGACGGTCTGCACGAC
CCCAAAGTTGCTGAACCTGAGACGGACCACAGCCGGGTTGTACTCAGGCG
CAAGTTCGGTAACTACGATGTACAAGAAGTAG
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