mRNA_H-paniculata_contig21317.5601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21317.5601.1
Unique NamemRNA_H-paniculata_contig21317.5601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21317.5601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21317contigH-paniculata_contig21317:3548..4226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21317.5601.1prot_H-paniculata_contig21317.5601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21317 3628..4027 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.106778-UTR-H-paniculata_contig21317:3547..36271622929572.106778-UTR-H-paniculata_contig21317:3547..3627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21317 3548..3627 +
1691480919.1560147-UTR-H-paniculata_contig21317:3547..36271691480919.1560147-UTR-H-paniculata_contig21317:3547..3627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21317 3548..3627 +
1622929572.1712675-UTR-H-paniculata_contig21317:4027..42261622929572.1712675-UTR-H-paniculata_contig21317:4027..4226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21317 4028..4226 +
1691480919.1850278-UTR-H-paniculata_contig21317:4027..42261691480919.1850278-UTR-H-paniculata_contig21317:4027..4226Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21317 4028..4226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.1306078-CDS-H-paniculata_contig21317:3627..38541622929572.1306078-CDS-H-paniculata_contig21317:3627..3854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21317 3628..3854 +
1691480919.1649597-CDS-H-paniculata_contig21317:3627..38541691480919.1649597-CDS-H-paniculata_contig21317:3627..3854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21317 3628..3854 +
1622929572.1510139-CDS-H-paniculata_contig21317:3969..40271622929572.1510139-CDS-H-paniculata_contig21317:3969..4027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21317 3970..4027 +
1691480919.1768963-CDS-H-paniculata_contig21317:3969..40271691480919.1768963-CDS-H-paniculata_contig21317:3969..4027Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21317 3970..4027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21317.5601.1

>prot_H-paniculata_contig21317.5601.1 ID=prot_H-paniculata_contig21317.5601.1|Name=mRNA_H-paniculata_contig21317.5601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MYRHIMWQRVTLVFRDDEPTRTHDLFEEATGETCLCLSVSVAIYCSREQC
CFFRDASTLFRKQLICRCVSLAVKRDTRQIHVPSLAPANKTENR*
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mRNA from alignment at H-paniculata_contig21317:3548..4226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21317.5601.1 ID=mRNA_H-paniculata_contig21317.5601.1|Name=mRNA_H-paniculata_contig21317.5601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=679bp|location=Sequence derived from alignment at H-paniculata_contig21317:3548..4226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGAGGAAACGGCGGGAGACAGGTGCTTATCTTCTTTTGTCTGTTCGT
GTGACTGTGAAGGTGTCTGTGTGTGTGCTCATGTATCGCCATATTATGTG
GCAAAGAGTAACGTTGGTTTTTCGGGATGACGAGCCGACGCGGACACACG
ATCTCTTCGAGGAAGCGACGGGAGAGACGTGCTTGTGTTTGTCTGTCAGT
GTCGCTATCTATTGTAGCAGAGAACAATGTTGTTTTTTTCGGGATGCCAG
CACACTATTTAGAAAACAGTTGATATGCAGATGTGTTAGTCTTGCTGTCA
AACGCGAGTTCACGCTGACTCCCCCCCCCCACCCCCTTCCGCCCCTCCTC
GTTAGAGGTGGGCACCGGCTCATGTTTATATCTTTCTAGCTATGATTGTA
AGCTAAAGCTACATAATCCCAGCACCCGACAAATCCATGTACCCAGTTTG
GCGCCAGCTAACAAAACCGAGAACAGGTAACCAATTTACCCCATTTTTTT
TTTTTTCCGGCGAATTCCTAGCTCTTCTACATTCCGGTTGAGAACCCGTT
TTGTCGATTTTGCCCACAACACCGGCTAAGAAAGTCATAAAACCGGTTAC
TGATTCACCCAAGCATCGGTTTGTTTAAAAAAGAAAAAAGAGTTCATCGT
TTGTTTTTCCAAACCAGTGCTCACCTCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig21317:3548..4226+

>mRNA_H-paniculata_contig21317.5601.1 ID=mRNA_H-paniculata_contig21317.5601.1|Name=mRNA_H-paniculata_contig21317.5601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig21317:3548..4226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATCGCCATATTATGTGGCAAAGAGTAACGTTGGTTTTTCGGGATGA
CGAGCCGACGCGGACACACGATCTCTTCGAGGAAGCGACGGGAGAGACGT
GCTTGTGTTTGTCTGTCAGTGTCGCTATCTATTGTAGCAGAGAACAATGT
TGTTTTTTTCGGGATGCCAGCACACTATTTAGAAAACAGTTGATATGCAG
ATGTGTTAGTCTTGCTGTCAAACGCGAATGTATCGCCATATTATGTGGCA
AAGAGTAACGTTGGTTTTTCGGGATGACGAGCCGACGCGGACACACGATC
TCTTCGAGGAAGCGACGGGAGAGACGTGCTTGTGTTTGTCTGTCAGTGTC
GCTATCTATTGTAGCAGAGAACAATGTTGTTTTTTTCGGGATGCCAGCAC
ACTATTTAGAAAACAGTTGATATGCAGATGTGTTAGTCTTGCTGTCAAAC
GCGACACCCGACAAATCCATGTACCCAGTTTGGCGCCAGCTAACAAAACC
GAGAACAGGTAACACCCGACAAATCCATGTACCCAGTTTGGCGCCAGCTA
ACAAAACCGAGAACAGGTAA
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