mRNA_H-paniculata_contig21316.5600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21316.5600.1
Unique NamemRNA_H-paniculata_contig21316.5600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A6H5L085_9PHAE (Palmitoyltransferase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L085_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 9.930e-16
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVRD 153
            YLM+H+GKLCGL+ L+ TMALV+TGFF YH+ L+ KG TTNESAKW E +D
Sbjct:  286 YLMHHYGKLCGLLALSATMALVLTGFFSYHVYLLLKGTTTNESAKWGEAKD 336
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: D8LSG7_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG7_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.250e-14
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVRDG 156
            YLM+H+GKLCGL+ L+ TMALV+TGF  YH+ L+ KG TTNESAKW E  +G
Sbjct:  286 YLMHHYGKLCGLLALSATMALVLTGFLSYHVYLLLKGTTTNESAKWGETGEG 337
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A835ZHT4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.180e-8
Identity = 24/47 (51.06%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   10 YHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVR 150
            +HH +LC L++LAG M  V++GF  YH  L ++G TTNE+AKW + R
Sbjct:  254 FHHAQLCALLLLAGAMGAVLSGFTAYHAWLAARGTTTNEAAKWGDAR 300
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A7S3LK32_9STRA (Palmitoyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LK32_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.510e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEV 147
            Y+ +H+  LCGL++L+  M +VM  F  YHL L+++G TTNE+AKW E+
Sbjct:  100 YMFFHYVDLCGLLLLSVVMGVVMFFFLGYHLYLIARGTTTNETAKWGEI 148
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A7S2PPS5_9STRA (Palmitoyltransferase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PPS5_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 1.060e-7
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVR 150
            YL+  H  L  L++L   MAL+++GF  +H+ L+S+GMTTNE  KWNE++
Sbjct:  257 YLIQEHNMLAALLLLMFVMALIVSGFLCFHIYLISRGMTTNEFYKWNEIQ 306
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A6U3A0T1_9STRA (Palmitoyltransferase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3A0T1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 6.720e-7
Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVR 150
            YL +      G+++L G MA+ + GFFMYH+ + SKG+TTNE+ KW+E++
Sbjct:  178 YLFHRFFMESGVLLLMGVMAVALGGFFMYHVWITSKGLTTNETFKWDEIK 227
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A7S0PM88_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PM88_MICPS)

HSP 1 Score: 47.8 bits (112), Expect = 3.760e-5
Identity = 21/50 (42.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:    1 YLMYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVR 150
            +L+YH+  L  L +    + + +  F +YHL L++KGMTTNE+ KW  VR
Sbjct:   29 FLVYHYAPLVMLDIFLVVLVIALGSFLVYHLHLINKGMTTNETFKWKYVR 78
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BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Match: A0A2R5G4C4_9STRA (Palmitoyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4C4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.120e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   34 LMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEV 147
            L+VL+  M +V+ GFFMYH+ L+ +G+TTNESAKW  +
Sbjct:  271 LLVLSAVMGVVVFGFFMYHVWLIFRGVTTNESAKWGGI 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21316.5600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L085_9PHAE9.930e-1668.63Palmitoyltransferase (Fragment) n=1 Tax=Ectocarpus... [more]
D8LSG7_ECTSI1.250e-1465.38Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A835ZHT4_9STRA1.180e-851.06Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
A0A7S3LK32_9STRA7.510e-848.98Palmitoyltransferase n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2PPS5_9STRA1.060e-748.00Palmitoyltransferase n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3A0T1_9STRA6.720e-746.00Palmitoyltransferase n=1 Tax=Amphiprora paludosa T... [more]
A0A7S0PM88_MICPS3.760e-542.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2R5G4C4_9STRA4.120e-555.26Palmitoyltransferase n=1 Tax=Hondaea fermentalgian... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21316contigH-paniculata_contig21316:4107..4265 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D8LSG7
Preferred nameZDHHC4
KEGG koko:K18932,ko:K20003
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1312@2759
EC2.3.1.225
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size159
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.037747-CDS-H-paniculata_contig21316:4106..42591622929572.037747-CDS-H-paniculata_contig21316:4106..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 4107..4259 -
1691480919.1332364-CDS-H-paniculata_contig21316:4106..42591691480919.1332364-CDS-H-paniculata_contig21316:4106..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 4107..4259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.0561984-UTR-H-paniculata_contig21316:4259..42651622929572.0561984-UTR-H-paniculata_contig21316:4259..4265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 4260..4265 -
1691480919.1454089-UTR-H-paniculata_contig21316:4259..42651691480919.1454089-UTR-H-paniculata_contig21316:4259..4265Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 4260..4265 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21316.5600.1prot_H-paniculata_contig21316.5600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21316 4107..4259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21316.5600.1

>prot_H-paniculata_contig21316.5600.1 ID=prot_H-paniculata_contig21316.5600.1|Name=mRNA_H-paniculata_contig21316.5600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MYHHGKLCGLMVLAGTMALVMTGFFMYHLSLVSKGMTTNESAKWNEVRDG
*
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mRNA from alignment at H-paniculata_contig21316:4107..4265-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21316.5600.1 ID=mRNA_H-paniculata_contig21316.5600.1|Name=mRNA_H-paniculata_contig21316.5600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig21316:4107..4265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACCTCATGTACCACCACGGGAAGTTGTGTGGTCTCATGGTGCTGGCGGG
CACGATGGCGCTGGTTATGACGGGGTTCTTCATGTATCACCTCTCCTTGG
TATCGAAGGGCATGACGACCAACGAGAGCGCTAAGTGGAATGAGGTGCGT
GATGGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21316:4107..4265-

>mRNA_H-paniculata_contig21316.5600.1 ID=mRNA_H-paniculata_contig21316.5600.1|Name=mRNA_H-paniculata_contig21316.5600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig21316:4107..4265- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCACCACGGGAAGTTGTGTGGTCTCATGGTGCTGGCGGGCACGAT
GGCGCTGGTTATGACGGGGTTCTTCATGTATCACCTCTCCTTGGTATCGA
AGGGCATGACGACCAACGAGAGCGCTAAGTGGAATGAGGTGCGTGATGGA
TGAATGTACCACCACGGGAAGTTGTGTGGTCTCATGGTGCTGGCGGGCAC
GATGGCGCTGGTTATGACGGGGTTCTTCATGTATCACCTCTCCTTGGTAT
CGAAGGGCATGACGACCAACGAGAGCGCTAAGTGGAATGAGGTGCGTGAT
GGATGA
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