mRNA_H-paniculata_contig21316.5599.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21316.5599.1
Unique NamemRNA_H-paniculata_contig21316.5599.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21316.5599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21316contigH-paniculata_contig21316:1046..2382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog2880.D8LSG7
Preferred nameZDHHC4
KEGG koko:K18932,ko:K20003
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1312@2759
EC2.3.1.225
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons2
Model size787
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21316.5599.1prot_H-paniculata_contig21316.5599.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21316 1574..2333 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.920032-UTR-H-paniculata_contig21316:1045..15731622929571.920032-UTR-H-paniculata_contig21316:1045..1573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 1046..1573 -
1691480919.0903234-UTR-H-paniculata_contig21316:1045..15731691480919.0903234-UTR-H-paniculata_contig21316:1045..1573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 1046..1573 -
1622929571.9873502-UTR-H-paniculata_contig21316:2333..23821622929571.9873502-UTR-H-paniculata_contig21316:2333..2382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 2334..2382 -
1691480919.122882-UTR-H-paniculata_contig21316:2333..23821691480919.122882-UTR-H-paniculata_contig21316:2333..2382Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21316 2334..2382 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.9404151-CDS-H-paniculata_contig21316:1573..16931622929571.9404151-CDS-H-paniculata_contig21316:1573..1693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 1574..1693 -
1691480919.101333-CDS-H-paniculata_contig21316:1573..16931691480919.101333-CDS-H-paniculata_contig21316:1573..1693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 1574..1693 -
1622929571.9677575-CDS-H-paniculata_contig21316:2243..23331622929571.9677575-CDS-H-paniculata_contig21316:2243..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 2244..2333 -
1691480919.1112478-CDS-H-paniculata_contig21316:2243..23331691480919.1112478-CDS-H-paniculata_contig21316:2243..2333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21316 2244..2333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21316.5599.1

>prot_H-paniculata_contig21316.5599.1 ID=prot_H-paniculata_contig21316.5599.1|Name=mRNA_H-paniculata_contig21316.5599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MAAGVSGGRLREAPHPGRFPENIYNNGVLRNMWEVVSPRCRRNPGTAGRE
LAYRDPFQHCYKPYWIPSV*
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mRNA from alignment at H-paniculata_contig21316:1046..2382-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21316.5599.1 ID=mRNA_H-paniculata_contig21316.5599.1|Name=mRNA_H-paniculata_contig21316.5599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1337bp|location=Sequence derived from alignment at H-paniculata_contig21316:1046..2382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGACGTGGGAACCCACTCTGAGGGGGGGAGCGGAGGGGGGCCAGCGA
TGGCGGCGGGTGTTAGTGGTGGTCGGCTCAGGGAGGCTCCGCACCCCGGT
CGATTCCCGGAGAACATCTATAACAACGGCGTGTTGCGGGTAAGGGCGGA
GTAGAGCCTGGGTGATGGCTGGAGAGAGGGGGGATTGATTTCGTCGTGGA
GGGGTGGAGAGTCAGGGTTGTGGTGGTGGTGACCTCGTATACAGCTGTCT
GATTTGTTTTGACTGTTTTCATGTATTATTTGATTAATGAAGCTTACCAA
GTACTCGAAAGCACGATACTGTATGGTTATACAGCTGGTGTGTCTCTCGT
CTCTAGCAGTCTTGTTGACCTTTTACGGTAGTCGGCCTACCTGGACTGAT
TATGCCTCCTTTCACTACTCATGAGTAAATAGTACATATTTTTTACTGTA
GCATATAGCCCTATTGCTGTCAGTGAGGGTTATATGAACTCAGAAATATG
TAAGGTGGTCGAGCGATACTGGCGATCGTGACATCCTGAGGTAAGTTATG
TGTATGGCTCGCTGGTGAACACTCGTGTATTTTGTCAGCGTTTATTGGTA
GGTGGTGCTATGCTATGTCAATACACGCTACCCCTTCCCCCCCTCCCTTG
TCACCCCCCCCCCCCATGCCTGCCCGCGCGCTGCATCAGAATATGTGGGA
AGTTGTATCCCCACGGTGCCGACGGAATCCAGGAACAGCAGGAAGGGAGC
TCGCCTATAGGGACCCTTTCCAGCATTGCTACAAACCTTACTGGATACCG
TCAGTTTGACTAATGATTCAAGTTTTTTATTACGGAGGCACATTGTTAAT
AGGATCAAATTGTTGCTCTACGGGGGGGGGAGGGGGCGAATGCTTGACCC
TGTTCCCCACCGAATCAACGTGCAGTATCGACATGTGTGGAACCGTCTAA
ATCATGCGGTGTGCACCCGCGTTTCGGTTTTCGATTTCACCTTGTGATTG
TAGAGATACATCGTGTTGAACGGGACCACATCATGCAAAAGAGCAACAGT
TCAGTCCAAGTAACAACGTGCCTCCGTAATAGGCATCGGCGGTGGGATGC
GATGCAAGGAAAGGGGGAGGAGCGCTCCAAATTAGCGTGGAGCGGTGCGT
GTGTATCCATGTTGTGTGTAAATATACAAAATGTGCTTGAAACCATGTTT
TAGTGAAGATATTACTCCCTCCGTTCCGTAAGTCTGCGGTATTAAGGGTG
TAATTTGTTGCAATGGCCTCCGAATCGAAAATGTTTTTTTTCGCCTCGGA
TTCCTTGTTGCTTTTCACGTTAATTTTTTTCTTAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig21316:1046..2382-

>mRNA_H-paniculata_contig21316.5599.1 ID=mRNA_H-paniculata_contig21316.5599.1|Name=mRNA_H-paniculata_contig21316.5599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig21316:1046..2382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGCGGGTGTTAGTGGTGGTCGGCTCAGGGAGGCTCCGCACCCCGG
TCGATTCCCGGAGAACATCTATAACAACGGCGTGTTGCGGATGGCGGCGG
GTGTTAGTGGTGGTCGGCTCAGGGAGGCTCCGCACCCCGGTCGATTCCCG
GAGAACATCTATAACAACGGCGTGTTGCGGAATATGTGGGAAGTTGTATC
CCCACGGTGCCGACGGAATCCAGGAACAGCAGGAAGGGAGCTCGCCTATA
GGGACCCTTTCCAGCATTGCTACAAACCTTACTGGATACCGTCAGTTTGA
AATATGTGGGAAGTTGTATCCCCACGGTGCCGACGGAATCCAGGAACAGC
AGGAAGGGAGCTCGCCTATAGGGACCCTTTCCAGCATTGCTACAAACCTT
ACTGGATACCGTCAGTTTGA
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