mRNA_H-paniculata_contig21309.5597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI) HSP 1 Score: 163 bits (413), Expect = 5.030e-51 Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
+DDHGEMRVDAQNWAAAAIE+KSDEKEISRAIK+KFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG
Sbjct: 14 MDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA) HSP 1 Score: 128 bits (322), Expect = 3.830e-37 Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
+DDH EMR DAQ WAAAAIE+ ++EK IS+ IK + + KYGPTWHCIVGTDFKA+VTHE+K F+FFYHGKMA CLYKAG
Sbjct: 14 MDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA) HSP 1 Score: 127 bits (318), Expect = 5.000e-36 Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
+D+HGEM+ DA+N AAAA+E +EK+ISR IKA F+ KYGPTWHCIVGTDF+AFVTHESKHF+FFY GK+A CLYKAG
Sbjct: 53 MDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA) HSP 1 Score: 116 bits (290), Expect = 5.860e-32 Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
+D+HGEM+ DA A AIE ++EK IS +IK+ F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKAG
Sbjct: 38 MDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN) HSP 1 Score: 110 bits (274), Expect = 5.340e-30 Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query: 4 DDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
D+HGEM+ + N AA AIE E E+S+ IKA F+ KYGPTWHCIVG+DF+A+VTHESK+F+FFY GK A CLYK G
Sbjct: 1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA) HSP 1 Score: 108 bits (270), Expect = 4.200e-29 Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 10 HGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
HGEM+ DA + A+ A+E +EK+ISR IK+ F+ KYGPTWHCIVG+DF+AFVT+ESKHF+FFY GK A CLYK
Sbjct: 27 HGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH) HSP 1 Score: 106 bits (265), Expect = 1.070e-28 Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query: 19 MRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
M+ DA AAA+ET ++EK+IS+ +K F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKA
Sbjct: 1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA) HSP 1 Score: 109 bits (272), Expect = 9.810e-27 Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
VD+HGEM+ +A N AA A+E E EIS+ IKA+F+ KYGPTWHCIVG+DFK THE+KHF+FFYHGK A LYK G
Sbjct: 300 VDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.970e-23 Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
+D+H EM+ DA + A AIE+ EK+ + IK F+ KYGPTWH IVG+DFKA+ THE+K F FFY GK A C+YKAG
Sbjct: 41 MDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A0R3UCN8_MESCO (Dynein light chain n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UCN8_MESCO) HSP 1 Score: 92.8 bits (229), Expect = 7.510e-23 Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 16 EMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
EM+ DA + A+ A++ ++ EK+I+ AIK KF+ KYGPTWHCIVG +F ++VTHESKHF++FY G++A L+K+G
Sbjct: 29 EMQHDAVDCASEAMQNQTIEKDIAAAIKKKFDSKYGPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKSG 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21309.5597.1 >prot_H-paniculata_contig21309.5597.1 ID=prot_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp MRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVback to top mRNA from alignment at H-paniculata_contig21309:1695..2699- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21309.5597.1 ID=mRNA_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig21309:1695..2699- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21309:1695..2699- >mRNA_H-paniculata_contig21309.5597.1 ID=mRNA_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig21309:1695..2699- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |