mRNA_H-paniculata_contig21309.5597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21309.5597.1
Unique NamemRNA_H-paniculata_contig21309.5597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: D7G4Z5_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4Z5_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 5.030e-51
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +DDHGEMRVDAQNWAAAAIE+KSDEKEISRAIK+KFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG
Sbjct:   14 MDDHGEMRVDAQNWAAAAIESKSDEKEISRAIKSKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 92          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A835YST4_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.830e-37
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +DDH EMR DAQ WAAAAIE+ ++EK IS+ IK + + KYGPTWHCIVGTDFKA+VTHE+K F+FFYHGKMA CLYKAG
Sbjct:   14 MDDHSEMRTDAQAWAAAAIESHAEEKAISKDIKGRMDDKYGPTWHCIVGTDFKAYVTHETKTFMFFYHGKMAICLYKAG 92          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S2V5R3_9STRA (Dynein light chain (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5R3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.000e-36
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+HGEM+ DA+N AAAA+E   +EK+ISR IKA F+ KYGPTWHCIVGTDF+AFVTHESKHF+FFY GK+A CLYKAG
Sbjct:   53 MDEHGEMKNDAKNVAAAAVEQHQEEKDISRHIKAHFDQKYGPTWHCIVGTDFRAFVTHESKHFIFFYIGKIAICLYKAG 131          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S2CIH5_9STRA (Dynein light chain n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIH5_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.860e-32
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+HGEM+ DA   A  AIE  ++EK IS +IK+ F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKAG
Sbjct:   38 MDEHGEMKADAHTVAGEAIEKFTEEKAISTSIKSFFDAKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKAG 116          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: F0XW00_AURAN (Dynein light chain (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW00_AURAN)

HSP 1 Score: 110 bits (274), Expect = 5.340e-30
Identity = 50/78 (64.10%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    4 DDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            D+HGEM+ +  N AA AIE    E E+S+ IKA F+ KYGPTWHCIVG+DF+A+VTHESK+F+FFY GK A CLYK G
Sbjct:    1 DEHGEMKQEVYNLAAYAIEQYVTEMEVSKHIKAHFDQKYGPTWHCIVGSDFRAYVTHESKNFIFFYQGKTAICLYKCG 78          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S0SUZ6_9STRA (Dynein light chain n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUZ6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.200e-29
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:   10 HGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
            HGEM+ DA + A+ A+E   +EK+ISR IK+ F+ KYGPTWHCIVG+DF+AFVT+ESKHF+FFY GK A CLYK 
Sbjct:   27 HGEMKNDALSVASTALEANQEEKDISRHIKSFFDQKYGPTWHCIVGSDFRAFVTYESKHFIFFYIGKTAICLYKT 101          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A482SJR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJR4_9ARCH)

HSP 1 Score: 106 bits (265), Expect = 1.070e-28
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   19 MRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKA 234
            M+ DA    AAA+ET ++EK+IS+ +K  F+ KYGPTWHCIVG+DF+AFVTHESKHF+FFY GK A CLYKA
Sbjct:    1 MKHDAFTVVAAALETNTEEKDISKHVKTYFDQKYGPTWHCIVGSDFRAFVTHESKHFIFFYIGKTAICLYKA 72          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A8J2SHI5_9STRA ([Phosphatase 2A protein]-leucine-carboxy methyltransferase n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHI5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 9.810e-27
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            VD+HGEM+ +A N AA A+E    E EIS+ IKA+F+ KYGPTWHCIVG+DFK   THE+KHF+FFYHGK A  LYK G
Sbjct:  300 VDEHGEMKQEAYNLAAYAVEQFVTEMEISKHIKAQFDEKYGPTWHCIVGSDFKLQCTHEAKHFIFFYHGKTAVALYKCG 378          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A7S1YV50_9STRA (Dynein light chain n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YV50_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.970e-23
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 VDDHGEMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            +D+H EM+ DA + A  AIE+   EK+ +  IK  F+ KYGPTWH IVG+DFKA+ THE+K F FFY GK A C+YKAG
Sbjct:   41 MDEHSEMKSDAISVATNAIESHIQEKDQANHIKRAFDAKYGPTWHVIVGSDFKAYGTHEAKTFFFFYVGKAAICMYKAG 119          
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Match: A0A0R3UCN8_MESCO (Dynein light chain n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UCN8_MESCO)

HSP 1 Score: 92.8 bits (229), Expect = 7.510e-23
Identity = 41/74 (55.41%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   16 EMRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFVTHESKHFVFFYHGKMAFCLYKAG 237
            EM+ DA + A+ A++ ++ EK+I+ AIK KF+ KYGPTWHCIVG +F ++VTHESKHF++FY G++A  L+K+G
Sbjct:   29 EMQHDAVDCASEAMQNQTIEKDIAAAIKKKFDSKYGPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKSG 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21309.5597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Z5_ECTSI5.030e-5196.20Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835YST4_9STRA3.830e-3773.42Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2V5R3_9STRA5.000e-3673.42Dynein light chain (Fragment) n=1 Tax=Fibrocapsa j... [more]
A0A7S2CIH5_9STRA5.860e-3267.09Dynein light chain n=1 Tax=Florenciella parvula Ta... [more]
F0XW00_AURAN5.340e-3064.10Dynein light chain (Fragment) n=1 Tax=Aureococcus ... [more]
A0A7S0SUZ6_9STRA4.200e-2965.33Dynein light chain n=1 Tax=Chromulina nebulosa Tax... [more]
A0A482SJR4_9ARCH1.070e-2866.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2SHI5_9STRA9.810e-2764.56[Phosphatase 2A protein]-leucine-carboxy methyltra... [more]
A0A7S1YV50_9STRA2.970e-2356.96Dynein light chain n=1 Tax=Ditylum brightwellii Ta... [more]
A0A0R3UCN8_MESCO7.510e-2355.41Dynein light chain n=1 Tax=Mesocestoides corti Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21309contigH-paniculata_contig21309:1695..2699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue7.6e-35
Seed eggNOG ortholog2880.D7G4Z5
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-19_003050.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size240
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21309.5597.1prot_H-paniculata_contig21309.5597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21309 1695..2681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.7429962-CDS-H-paniculata_contig21309:1694..18351622929571.7429962-CDS-H-paniculata_contig21309:1694..1835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21309 1695..1835 -
1691480919.001445-CDS-H-paniculata_contig21309:1694..18351691480919.001445-CDS-H-paniculata_contig21309:1694..1835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21309 1695..1835 -
1622929571.7596056-CDS-H-paniculata_contig21309:2600..26811622929571.7596056-CDS-H-paniculata_contig21309:2600..2681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21309 2601..2681 -
1691480919.0136921-CDS-H-paniculata_contig21309:2600..26811691480919.0136921-CDS-H-paniculata_contig21309:2600..2681Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21309 2601..2681 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.7813485-UTR-H-paniculata_contig21309:2681..26991622929571.7813485-UTR-H-paniculata_contig21309:2681..2699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21309 2682..2699 -
1691480919.0259063-UTR-H-paniculata_contig21309:2681..26991691480919.0259063-UTR-H-paniculata_contig21309:2681..2699Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21309 2682..2699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21309.5597.1

>prot_H-paniculata_contig21309.5597.1 ID=prot_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MRVDAQNWAAAAIETKSDEKEISRAIKAKFEVKYGPTWHCIVGTDFKAFV
THESKHFVFFYHGKMAFCLYKAG*
back to top

mRNA from alignment at H-paniculata_contig21309:1695..2699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21309.5597.1 ID=mRNA_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig21309:1695..2699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGATGATCATGGCGAGATGAGAGTAGACGCGCAAAACTGGGCGGCTGC TGCTATTGAGACCAAGAGCGACGAAAAGGAAATATCCAGGGCCATCAAGG TGAAAGATTTGGTCGCCAAGCTATACGTAGTGCTTCTCGGCCAGTTCGAT GTTGTTGCAGTGAACGACCCAGCTAGCCGTTGATCGCTGTGTGTCAGGGT GTTAAATGGCGAAATGGGCGTATACTATACAACTTGGCGGTTGAGGCTTG TGTGCGTCCCCTCGCCACTGTGTTATCCGAAGATAGGACGATCCGAGATC ACCCCACCCCGCAAATGGGTATGCTTTATTTAGTTTTCACACATCTGTTT CGTTCCCTCTGTAACTCGCGAATTGTGTCAATGAAACCTGCGTGACAGGG AGTTACTCTACGCGCTCTTCCTTTTTCCTGATGTTGCACATACCACTATT TGGTAACCTCTATCTGATACGCCTGGTCGTGGATTGATTATTCATCAGTT ACATTTTTTTCCGAGTTATGGCTAAATAATAGAAGGATATTTTCCCGCGT GGGCGAGCGACGGACAGTCGTTATTATGTTAATCTGAAAACGTACGAGTA AAGGCGCGTCCGAGTTATAGGAATCTCGTGGAGCCGGGTAGACATCATGA AAGGTGACACCCTTTACCCTCGCAGTAAAAAAGATACTGGGAGAGAGTTG CCATAGTTTTGAACCGTTTTCAGGGTCGTGTTTCGCTCCCCTGAATATGC ACGTCTTAATCGAGTGATCGCTTTGAACTACTGTATCTCGAACAGGACCT AAAATCATTATTCTCTCAATGTCTCGGCCACTGAAAGCCTCCACCACCCC TTGCTTTTTCACAGGCAAAATTCGAGGTGAAGTACGGACCGACATGGCAT TGCATTGTGGGGACCGACTTCAAAGCTTTCGTGACACACGAGAGCAAGCA TTTCGTCTTCTTTTACCATGGAAAGATGGCGTTTTGTCTCTACAAGGCTG GTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig21309:1695..2699-

>mRNA_H-paniculata_contig21309.5597.1 ID=mRNA_H-paniculata_contig21309.5597.1|Name=mRNA_H-paniculata_contig21309.5597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig21309:1695..2699- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGTAGACGCGCAAAACTGGGCGGCTGCTGCTATTGAGACCAAGAG
CGACGAAAAGGAAATATCCAGGGCCATCAAGATGAGAGTAGACGCGCAAA
ACTGGGCGGCTGCTGCTATTGAGACCAAGAGCGACGAAAAGGAAATATCC
AGGGCCATCAAGGCAAAATTCGAGGTGAAGTACGGACCGACATGGCATTG
CATTGTGGGGACCGACTTCAAAGCTTTCGTGACACACGAGAGCAAGCATT
TCGTCTTCTTTTACCATGGAAAGATGGCGTTTTGTCTCTACAAGGCTGGT
TGAGCAAAATTCGAGGTGAAGTACGGACCGACATGGCATTGCATTGTGGG
GACCGACTTCAAAGCTTTCGTGACACACGAGAGCAAGCATTTCGTCTTCT
TTTACCATGGAAAGATGGCGTTTTGTCTCTACAAGGCTGGTTGA
back to top