mRNA_H-paniculata_contig21303.5595.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21303.5595.1
Unique NamemRNA_H-paniculata_contig21303.5595.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: D7FYP9_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP9_ECTSI)

HSP 1 Score: 398 bits (1023), Expect = 1.200e-125
Identity = 322/588 (54.76%), Postives = 361/588 (61.39%), Query Frame = 1 
Query:  136 SKKRGLAAITPRAPPPLPDSLSMLPEFEKAKKFVGAKPGYMFTSGKTGVGYYIDRVQIGEMGDKAKARLAASVAAASAGGNASLARPT--------------------EKSSAIDGAAGMPIAKTDSAGQKRIMCKKELT-----TNEKKERSQVAVVPQQPAKVDTAVAAAATPV----------------------AKRKEARGAKGNGVLTQKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATSTEKPNGVAAEKHVDVGARKREINEKGGNXXXXXXXXXXXXXXXEDDGDGMEASKRAAVGLENDGGEGSVASEXXXXXXXXXXXXXXXXXXXXXXGNTQQE------------KASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARVRMWRHLQTQKS 1722
            S   G  A  PR PPPLP++LS LP+F K   F G K GY F+ GK GVGYY+DRVQIG MGDK +ARLAA++   +A G     +P                     +K S +D  AG   + +  A +K  +   +L        E K  +    V    A  D A++  A+                          R    G  G+GV   K   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AA   +    V AE+ V    R          XXXXXXXXXXXXXXX D+   ME                     XXXX                  G  + +            KASF+SLGVTGPLCEAA QLGWTHATEIQ+QALPLAF+GKDVIGLAETGSGKTGAFA+PILQALL NPQRLFAV++APTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALA KPHVVIATPGRLVDHLENTKGFSLRTAK+LVLDEADRMLGMDFEEEINK+L+VLPRERRTFLFSATMTSKVAKLQRASLK+PARV +     T K+
Sbjct:   35 SPAAGRVAFKPRPPPPLPEALSSLPKFVKKNNFSGRKLGYFFSRGKAGVGYYVDRVQIGAMGDKLRARLAATLKPPAAAGGGEATKPAGTKTAAGPGAVNVKSPTASRDKKSPVD--AGNSSSSSSKAVEKSSVAVPKLRGDGIRAGESKRTTPAVAVKDGGAGSDEALSDGASXXXXXXXXXXXXXXXXXXXXGXGEVARSVPNGQGGSGVKAAKEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERVSNGAAAAKADAGAKVVAERAVG-NTRGAHEXXXXXXXXXXXXXXXXXXXXXXDEXXEMEGEAXXXXXXXXXXXXXXXXXXXXXXDRGTRVRGLEKNEDNSSSGEKRPKGPEADEPPPEDIKASFESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQALLENPQRLFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKPHVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRTFLFSATMTSKVAKLQRASLKNPARVEVANKFSTPKT 619
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: A0A835YP34_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP34_9STRA)

HSP 1 Score: 332 bits (851), Expect = 3.070e-100
Identity = 169/216 (78.24%), Postives = 189/216 (87.50%), Query Frame = 1 
Query: 1075 EKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARVRMWRHLQTQKS 1722
            E+ +F SLGV  PLC+A  +LGWTHATEIQ+Q+LPLA  G+DVIGLAETGSGKT AFA+PILQALLA PQRLFA VLAPTRELAFQINEVMEALG  IGL+T C+VGGIDM  Q+VALAK+PHVVIATPGRLVDHLENTKGF+LR  KFLVLDEADRML MDFEEEINK+LAV+PRER T+LFSATMTSKVAKLQRASL+DPA+V +     T K+
Sbjct:  403 ERVTFASLGVVAPLCDAIARLGWTHATEIQRQSLPLALAGRDVIGLAETGSGKTAAFALPILQALLAAPQRLFAAVLAPTRELAFQINEVMEALGSTIGLRTACVVGGIDMVSQAVALAKRPHVVIATPGRLVDHLENTKGFNLRAIKFLVLDEADRMLSMDFEEEINKLLAVIPRERNTYLFSATMTSKVAKLQRASLRDPAKVEVAHRFTTPKT 618
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: W7TSS5_9STRA (Dead deah box rna n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSS5_9STRA)

HSP 1 Score: 311 bits (798), Expect = 2.200e-96
Identity = 156/209 (74.64%), Postives = 180/209 (86.12%), Query Frame = 1 
Query: 1069 QQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLP--RERRTFLFSATMTSKVAKLQRASLKDPARV 1689
            + +  +F++LGV  PLCEA   +GWT  T IQQQA+P A QG+DVIGLAETGSGKTGAFA+P+LQALLA PQRLFAVVLAPTRELAFQI+EV EALG  IGLK+ C+VGG+DM  Q++ALA+KPHVV+ATPGRLVDHLENTKGF +R A+FLVLDEADRML MDFEEEINKILA++P  + RRT LFSATMTSKVAKLQRASL DP +V
Sbjct:   30 EDDVQTFEALGVVKPLCEACAAIGWTKPTGIQQQAIPAALQGRDVIGLAETGSGKTGAFALPVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKSCCVVGGVDMMTQAIALARKPHVVVATPGRLVDHLENTKGFHIREARFLVLDEADRMLSMDFEEEINKILAIMPTGKHRRTLLFSATMTSKVAKLQRASLTDPVKV 238
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: A0A812RT96_SYMMI (DDX47 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RT96_SYMMI)

HSP 1 Score: 310 bits (793), Expect = 8.590e-96
Identity = 154/218 (70.64%), Postives = 185/218 (84.86%), Query Frame = 1 
Query: 1069 QQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARVRMWRHLQTQKS 1722
            ++ + +F+SLGV   LC+A   +GWT  TEIQQ A+P A +G+D+IGLAETGSGKTGAFAIPILQALL  PQRLFAV+LAPTRELAFQINEV EALG  I L++VC+VGGIDM  Q++ALAK+PH+V+ATPGRLVDHL++TKGFSLRT KFLV+DEADRML MDFEEE+N+ILAV+PRER T+LFSATMT KVAKLQ+ASL DP +V +    QT K+
Sbjct:   31 ERTEVTFKSLGVLDSLCDAINGIGWTKPTEIQQNAIPEALKGRDIIGLAETGSGKTGAFAIPILQALLQRPQRLFAVILAPTRELAFQINEVFEALGSAIALRSVCVVGGIDMMTQAIALAKQPHIVVATPGRLVDHLQHTKGFSLRTLKFLVMDEADRMLSMDFEEELNQILAVIPRERATYLFSATMTQKVAKLQKASLTDPVKVEVSNKFQTPKT 248
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: A0A024UX28_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UX28_9STRA)

HSP 1 Score: 306 bits (783), Expect = 2.420e-94
Identity = 157/207 (75.85%), Postives = 174/207 (84.06%), Query Frame = 1 
Query: 1069 QQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARV 1689
            Q E  SF  LGV   LCE+   LGWT  ++IQQ++LP A  GKD+IGLAETGSGKTGAF IPILQ LLA+PQRLFA+VLAPTRELAFQI+E  EALG  IGLK  C+VGGIDM  Q VALAKKPHVVIATPGRLVDHLENTKGFSLRT K+LVLDEADRML MDFEEEIN+I+ ++P ERRT+LFSATMTSKVAKLQRASLK P +V
Sbjct:   25 QIEDKSFSELGVNPALCESIAALGWTRPSKIQQKSLPPALAGKDIIGLAETGSGKTGAFVIPILQDLLASPQRLFALVLAPTRELAFQISEQFEALGSSIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMPNERRTYLFSATMTSKVAKLQRASLKSPVKV 231
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: A0A7S0SXP7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXP7_9STRA)

HSP 1 Score: 302 bits (774), Expect = 3.290e-93
Identity = 154/220 (70.00%), Postives = 178/220 (80.91%), Query Frame = 1 
Query: 1063 NTQQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARVRMWRHLQTQKS 1722
            +   E  +F+ LGV   LCEA   +GW   T IQ  +LP A  G+D+IGLAETGSGKTGAFAIPILQALLANPQR FAVVLAPTRELAFQI+EV EALG  I L++VCIVGGIDM  Q++ LAK+PHV++ATPGRL DHL+NTKGFSLR  K+LVLDEADRML MDFEEEINKILAV+PRER T+LFSATMTSKVAKLQ+ASL +P +V +    QT K+
Sbjct:   13 SNDNENKTFKDLGVVDTLCEAIESVGWKFPTPIQLNSLPEALAGRDIIGLAETGSGKTGAFAIPILQALLANPQRFFAVVLAPTRELAFQIHEVFEALGSSIALQSVCIVGGIDMMTQAIVLAKRPHVIVATPGRLADHLQNTKGFSLRNLKYLVLDEADRMLSMDFEEEINKILAVIPRERNTYLFSATMTSKVAKLQKASLNNPVKVEVSNKFQTPKT 232
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: G4YJE0_PHYSP (Uncharacterized protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=G4YJE0_PHYSP)

HSP 1 Score: 302 bits (774), Expect = 6.080e-93
Identity = 152/202 (75.25%), Postives = 171/202 (84.65%), Query Frame = 1 
Query: 1084 SFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARV 1689
            SFQ LGV   +CEA   +GW+  ++IQQQA+P    GKD+IGLAETGSGKTGAF IPILQ+LL NPQRL+A+VLAPTRELA+QI E  EALG  IGLK  C+VGGIDM QQ VALA+KPHVVIATPGRLVDHLENTKGFSLRT KFLVLDEADRML MDFEEEIN+I+ ++P ER T+LFSATMTSKV KLQRASLKDP +V
Sbjct:   32 SFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPILQSLLRNPQRLYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAERNTYLFSATMTSKVRKLQRASLKDPVKV 233
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: A0A485KZC3_9STRA (Aste57867_13094 protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KZC3_9STRA)

HSP 1 Score: 302 bits (774), Expect = 6.440e-93
Identity = 156/207 (75.36%), Postives = 173/207 (83.57%), Query Frame = 1 
Query: 1069 QQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARV 1689
            Q E+ SF  LGV   LCE+   LGWT  ++IQQ++LP A  GKD+IGLAETGSGKTGAF IPILQ LL  PQRLFA+VLAPTRELAFQI+E  EALG  IGLK  C+VGGIDM  Q VALAKKPHVVIATPGRLVDHLENTKGFSLRT K+LVLDEADRML MDFEEEIN+I+ ++P ERRT+LFSATMTSKVAKLQRASLK P +V
Sbjct:   16 QLEEKSFLELGVDPALCESIAALGWTRPSKIQQKSLPPALAGKDLIGLAETGSGKTGAFVIPILQDLLQAPQRLFALVLAPTRELAFQISEQFEALGAAIGLKCACVVGGIDMMNQQVALAKKPHVVIATPGRLVDHLENTKGFSLRTMKYLVLDEADRMLSMDFEEEINQIIQLMPSERRTYLFSATMTSKVAKLQRASLKSPVKV 222
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BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: UPI000719B3C4 (probable ATP-dependent RNA helicase DDX47 n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719B3C4)

HSP 1 Score: 301 bits (772), Expect = 8.260e-93
Identity = 153/213 (71.83%), Postives = 178/213 (83.57%), Query Frame = 1 
Query: 1075 EKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPARVRMWRHLQT 1713
            EK +F+SLGVT  LCEA  QLGW   ++IQQ++LPLA QGKDVIGLAETGSGKTGAFAIPI+QALL NPQRLF ++L PTRELAFQI+E  EALG  IG+K   IVGGIDM  Q++ LAKKPHVVIATPGRLVDHLENTKGF+LR  K+LV+DEADR+L MDFE E++KIL V+PR+R T+LFSATMT KVAKLQRASL+DP +V +    QT
Sbjct:   21 EKVTFRSLGVTDVLCEACDQLGWKTPSKIQQESLPLALQGKDVIGLAETGSGKTGAFAIPIIQALLENPQRLFGLILTPTRELAFQISEQFEALGSSIGIKCAVIVGGIDMMTQAIHLAKKPHVVIATPGRLVDHLENTKGFNLRALKYLVMDEADRILNMDFEAEVDKILKVIPRDRHTYLFSATMTKKVAKLQRASLQDPVKVEVSTKYQT 233
[Close]
BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Match: Q6NTW0_XENLA (RNA helicase n=1 Tax=Xenopus laevis TaxID=8355 RepID=Q6NTW0_XENLA)

HSP 1 Score: 295 bits (756), Expect = 1.800e-92
Identity = 144/208 (69.23%), Postives = 177/208 (85.10%), Query Frame = 1 
Query: 1063 NTQQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKDVIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGFSLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVAKLQRASLKDPAR 1686
            N ++E+ +F+ LGVT  LCEA  QLGW   T+IQ +A+P+A QG+D+IGLAETGSGKTGAFA+PILQ LL +PQRL+A+VL PTRELAFQI+E  EA+G  IG+K+  IVGGIDM  QS+ALAKKPHVVIATPGRL+DHLENTKGF+LR  K+LV+DEADR+L MDFE E++KIL V+PR+R+TFLFSATMT KV KL+RA+LKDP +
Sbjct:   13 NAEEEQKTFRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQTLLESPQRLYALVLTPTRELAFQISEQFEAIGSSIGVKSAVIVGGIDMMSQSLALAKKPHVVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLERAALKDPVK 220
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21303.5595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP9_ECTSI1.200e-12554.76DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A835YP34_9STRA3.070e-10078.24P-loop containing nucleoside triphosphate hydrolas... [more]
W7TSS5_9STRA2.200e-9674.64Dead deah box rna n=3 Tax=Monodopsidaceae TaxID=42... [more]
A0A812RT96_SYMMI8.590e-9670.64DDX47 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A024UX28_9STRA2.420e-9475.85Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A7S0SXP7_9STRA3.290e-9370.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
G4YJE0_PHYSP6.080e-9375.25Uncharacterized protein n=21 Tax=Peronosporaceae T... [more]
A0A485KZC3_9STRA6.440e-9375.36Aste57867_13094 protein n=2 Tax=Aphanomyces TaxID=... [more]
UPI000719B3C48.260e-9371.83probable ATP-dependent RNA helicase DDX47 n=1 Tax=... [more]
Q6NTW0_XENLA1.800e-9269.23RNA helicase n=1 Tax=Xenopus laevis TaxID=8355 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21303contigH-paniculata_contig21303:424..4203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.1
Seed ortholog evalue1.1e-109
Seed eggNOG ortholog2880.D7FYP9
Preferred nameDDX47
KEGG koko:K10352,ko:K14777
KEGG Pathwayko04530,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006413,GO:0006518,GO:0006725,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008026,GO:0008135,GO:0008150,GO:0008152,GO:0008186,GO:0008219,GO:0008380,GO:0008625,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010468,GO:0010501,GO:0012501,GO:0016070,GO:0016072,GO:0016281,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019538,GO:0022613,GO:0023052,GO:0030490,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0042623,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097190,GO:0097191,GO:0140098,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0330@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko04147,ko04812
Exons6
Model size1722
Cds size1722
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21303.5595.1prot_H-paniculata_contig21303.5595.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21303 424..4203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.5056634-CDS-H-paniculata_contig21303:423..5881622929571.5056634-CDS-H-paniculata_contig21303:423..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 424..588 -
1691480918.8865373-CDS-H-paniculata_contig21303:423..5881691480918.8865373-CDS-H-paniculata_contig21303:423..588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 424..588 -
1622929571.523718-CDS-H-paniculata_contig21303:1314..14551622929571.523718-CDS-H-paniculata_contig21303:1314..1455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 1315..1455 -
1691480918.9045532-CDS-H-paniculata_contig21303:1314..14551691480918.9045532-CDS-H-paniculata_contig21303:1314..1455Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 1315..1455 -
1622929571.5366857-CDS-H-paniculata_contig21303:1901..19761622929571.5366857-CDS-H-paniculata_contig21303:1901..1976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 1902..1976 -
1691480918.9152792-CDS-H-paniculata_contig21303:1901..19761691480918.9152792-CDS-H-paniculata_contig21303:1901..1976Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 1902..1976 -
1622929571.5531995-CDS-H-paniculata_contig21303:2380..25301622929571.5531995-CDS-H-paniculata_contig21303:2380..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 2381..2530 -
1691480918.9265244-CDS-H-paniculata_contig21303:2380..25301691480918.9265244-CDS-H-paniculata_contig21303:2380..2530Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 2381..2530 -
1622929571.5686808-CDS-H-paniculata_contig21303:2883..30061622929571.5686808-CDS-H-paniculata_contig21303:2883..3006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 2884..3006 -
1691480918.9346714-CDS-H-paniculata_contig21303:2883..30061691480918.9346714-CDS-H-paniculata_contig21303:2883..3006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 2884..3006 -
1622929571.5856998-CDS-H-paniculata_contig21303:3135..42031622929571.5856998-CDS-H-paniculata_contig21303:3135..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 3136..4203 -
1691480918.9424272-CDS-H-paniculata_contig21303:3135..42031691480918.9424272-CDS-H-paniculata_contig21303:3135..4203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21303 3136..4203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21303.5595.1

>prot_H-paniculata_contig21303.5595.1 ID=prot_H-paniculata_contig21303.5595.1|Name=mRNA_H-paniculata_contig21303.5595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=574bp
MGRGSKSKSPRSSRRTSGGGGGYGGNHSKNGRGQQQRGRSFEPPSSKKRG
LAAITPRAPPPLPDSLSMLPEFEKAKKFVGAKPGYMFTSGKTGVGYYIDR
VQIGEMGDKAKARLAASVAAASAGGNASLARPTEKSSAIDGAAGMPIAKT
DSAGQKRIMCKKELTTNEKKERSQVAVVPQQPAKVDTAVAAAATPVAKRK
EARGAKGNGVLTQKREDGSSSDQEHQEEGGAATSESDASSEMVDEEEEEH
IGGEAAATSTEKPNGVAAEKHVDVGARKREINEKGGNEEGRREEKQDEQK
TEEDDGDGMEASKRAAVGLENDGGEGSVASESDESDGEEEENESQEEQEE
ADEGNTQQEKASFQSLGVTGPLCEAAGQLGWTHATEIQQQALPLAFQGKD
VIGLAETGSGKTGAFAIPILQALLANPQRLFAVVLAPTRELAFQINEVME
ALGVGIGLKTVCIVGGIDMFQQSVALAKKPHVVIATPGRLVDHLENTKGF
SLRTAKFLVLDEADRMLGMDFEEEINKILAVLPRERRTFLFSATMTSKVA
KLQRASLKDPARVRMWRHLQTQKS
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mRNA from alignment at H-paniculata_contig21303:424..4203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21303.5595.1 ID=mRNA_H-paniculata_contig21303.5595.1|Name=mRNA_H-paniculata_contig21303.5595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3780bp|location=Sequence derived from alignment at H-paniculata_contig21303:424..4203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGGGGCTCTAAGTCTAAGTCTCCACGCAGCAGCCGCCGCACAAG
CGGCGGCGGAGGAGGGTACGGCGGCAATCACAGCAAAAATGGTCGAGGGC
AACAGCAGCGGGGGAGATCGTTCGAGCCGCCGTCGTCCAAGAAAAGGGGA
CTTGCGGCCATCACGCCCAGGGCCCCACCACCGCTACCAGACTCTCTCTC
CATGCTGCCAGAGTTCGAAAAGGCGAAGAAGTTCGTTGGCGCCAAACCCG
GTTACATGTTTACCAGTGGCAAGACCGGCGTGGGCTACTACATCGATCGC
GTTCAGATTGGTGAGATGGGCGATAAGGCGAAGGCTCGTCTAGCCGCGTC
GGTCGCTGCTGCCAGCGCGGGCGGCAATGCGTCTCTCGCAAGGCCTACAG
AGAAGAGTTCAGCAATCGATGGCGCGGCTGGGATGCCCATTGCAAAAACT
GATTCCGCTGGGCAGAAAAGGATCATGTGCAAGAAAGAGCTGACCACGAA
TGAGAAGAAGGAGAGGTCTCAGGTAGCGGTCGTACCCCAACAACCGGCGA
AAGTGGATACGGCGGTGGCTGCTGCTGCTACACCCGTGGCGAAGAGAAAA
GAGGCAAGAGGGGCTAAGGGGAATGGTGTGCTTACACAAAAGCGAGAGGA
CGGCAGCTCATCCGACCAGGAGCACCAGGAGGAGGGGGGGGCTGCAACAA
GCGAGAGCGATGCGAGCTCGGAAATGGTCGATGAAGAAGAGGAGGAGCAT
ATTGGGGGCGAGGCGGCGGCGACGAGCACCGAGAAGCCAAATGGAGTAGC
TGCTGAGAAGCACGTGGATGTCGGAGCAAGAAAGAGGGAAATCAATGAAA
AAGGCGGGAACGAGGAAGGTAGACGCGAGGAGAAACAGGATGAGCAAAAA
ACAGAGGAAGATGATGGTGATGGAATGGAAGCCTCAAAACGGGCGGCTGT
AGGCTTGGAGAATGACGGGGGGGAGGGGAGCGTGGCAAGTGAGAGCGACG
AGAGTGATGGCGAAGAAGAAGAAAACGAAAGCCAAGAGGAGCAAGAGGAG
GCCGATGAAGGCAACACTGTACCGGGCAACAAACCCGACGGGAAGCGAAA
AGAAGACCAAACCCATACAAGCTCCCCTAGCAAAGAAGCAGGCCAGATGG
AGGTTGAAGAGGAGACGTTAGATGGAGGGCACGAGGGGGGGGGGCAGCAA
CAGGAGAAAGCCTCGTTCCAGTCGCTCGGCGTTACAGGGCCCCTGTGCGA
GGCTGCGGGTCAGCTGGGCTGGACCCACGCGACGGAGATTCAGCAGCAAG
CTCTCCCTTTGGCTTTCCAGGTGGCAGTTGTAGAAAAGAGTAGATCAACG
TCCATATAGAAATACCTCACAACTAGTAGATAGATACCGAGACAGCTGAT
GATGCGCGATTGAGCAGTTTTGGAAGGATTGCACAACGCATTGTTTCGCC
TAGCTAGCTGTGTGTATTTCTTGTTTAAGAGCAGGGCGCATGAATTTGTG
GTTAACGACCACACGGCAAGTTCCCAATATATGGTTTTCAGGTTTTGGGC
GCTTGTGTATCAACCTCGTGACCTGTTTCTTGTACGCAGCGGTTAGCTTG
TGCTTTAAGCTTCAGTTGCATGGTCTGAACAAGACTGCCTCGACCCTTCC
CCCTCAACGGGTCAATTTATCAGGGTAAGGATGTCATCGGTCTCGCGGAG
ACCGGGTCGGGCAAGACGGGCGCGTTCGCGATTCCCATCCTCCAGGCGCT
GTTGGCAAACCCGCAGAGGCTTTTTGCTGTGGTACTGGCCCCGACCCGGG
AGCTAGCTTTTCAAATCAACGAGGTAAAGCCCAGGGCGACGCACGTGGCA
TAGGGTTGGGGAGCATATTCCGTCATGTACTTTATACTCATGCCTCCAGT
ACCTCTTTTCTATTTCGTACTTTTTCTCCACCTCTAATGGTGGGCGCCCG
CTTTGTCTACAGGCTACCTGGTCCAGTACCCTCAAGGATGTCGTTTCTTA
GTGATGGCGTAAGAGGTCGTTGTCTACAAGACTAGAAGAGCCCTTTCGAT
CCATTATTCGGTGCAGGTGAAACGAATACCAGAAGCCCACCGTGCTGGTG
CGGCCGCTGTTGTTTGTTTCGCGGGGGGTTGACATTGATGAGCCGATCCT
GTGCTCTCGGACTGTCCGTTTTCGCTCAATGTGTCCCATCACATCGCTCC
AACCTGTGTCCATTGTGGTGGTGGCAGGTCATGGAAGCTCTTGGAGTGGG
CATTGGCCTGAAGACTGTGTGCATCGTGGGTGGCATCGATATGTTCCAGC
AGGTGATAATCAGAAGCTTGTATCATTCACACGAAGCGATAGACGGTGAC
GTCAGCGGCAAGGCACCAATAGAGACAGCGGAAAGCGGGGTTGCGAGCGA
CAGGCGGGCAGGCAGTACCGTACATCCCGTCACATGAAGTAAAAACGCTT
TCTGTGCGTATATCAGCTTAACTTCCAACCACCGCAGTTGCACTGTAGAT
CTTGTGTGGCGATGAGTCGTGTACAGTCCGTGACAAAACGGATTAAGTGT
GGTGTCTGGACGCAGGTCAGTTCATTGTTGGATGCGATACCTGTACCTGT
ACAGTAGATTTTTTTCTCGCTGCCTAACTCTCGTTCCGGCCAAGCGTGGA
GGATGAGCTCAATTTTGCTCACCCTTCTTCGGCACTCCCCTCACACAGCT
ACCGTCGGGCCTGTTCTATTGCCCACATGTCTTCATGTACTGTCTCAGTC
CGTGGCACTTGCCAAGAAACCTCACGTGGTGATTGCTACTCCTGGCCGCC
TGGTTGACCACCTGGAGAACACGAAAGGCTTCAGCTTGCGGACGGCCAAG
TTTTTGGTGCTTGATGAGGCTGACCGCATGCTCGGCATGGTGAGTTGTGT
ATGCAAATAATGCCGGGGTCGTAGTGACGGGATGTGAGGTTCCATTGTGT
CTCATCAACTCGAACCTGGGAGGGGGGGAGGGGGGTCCCAACGCTCATGT
GTGCTTCTACTTTGCTCGACTACACACTTCAGCATATTTGTACAATTGGT
GCCATGTGCACTGTGCTGGGTCTCCCTCCGCTTTGCCACAGTCATTTATT
TGGTTATTTGCAAAGGGCGTGCGATTTATGCACTCTATGAAACCGAAGGT
TTACAGGGTGTAAGGTGAAAATAGCCACAGCGAAGAATCGGTCACAGCTC
GGTGCGGTAAAATCGTGAGATGAATATGGAGAGAAATAAATGGAGAATTA
TCAAGAATAGGCGCAAGAAAGAACAGAAAATCACCTTCTTGCCACTGTGC
TCGATTAGGGAACCAGAGAAGCCTTTTTTTGCCCAGCAGTACAGGCATTT
TTTGCACTGGCGCACACGTTATATATGCTACAGGAAGGGGAGGGCATACT
CATGTTCCGCAGGCCTTTTTATAGTAGTTGGACCATTGGCCACGCTCGAG
GGCGATGCGAAGTGTGCAAACCACCGTTCTCGAGGGTTTCCGACCTCTGC
CTCTGCCGCTGTCCATGAGCCCCGCACGCCGGTTCTCGTCACGTGTCTCT
ACTCCCTTTGATAAACGCTGTCGTCTTGGGGTCGTTTTCGTTGCTCGGGT
ACAAATACTATTCAGGACTTCGAAGAAGAGATCAACAAAATTCTGGCGGT
GCTGCCCAGGGAACGCCGCACGTTCCTTTTCAGCGCCACAATGACCTCCA
AGGTGGCCAAGTTGCAGCGTGCTTCTCTCAAGGACCCTGCCAGGGTAAGG
ATGTGGCGTCACCTACAAACGCAGAAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig21303:424..4203-

>mRNA_H-paniculata_contig21303.5595.1 ID=mRNA_H-paniculata_contig21303.5595.1|Name=mRNA_H-paniculata_contig21303.5595.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3444bp|location=Sequence derived from alignment at H-paniculata_contig21303:424..4203- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGGGGCTCTAAGTCTAAGTCTCCACGCAGCAGCCGCCGCACAAG
CGGCGGCGGAGGAGGGTACGGCGGCAATCACAGCAAAAATGGTCGAGGGC
AACAGCAGCGGGGGAGATCGTTCGAGCCGCCGTCGTCCAAGAAAAGGGGA
CTTGCGGCCATCACGCCCAGGGCCCCACCACCGCTACCAGACTCTCTCTC
CATGCTGCCAGAGTTCGAAAAGGCGAAGAAGTTCGTTGGCGCCAAACCCG
GTTACATGTTTACCAGTGGCAAGACCGGCGTGGGCTACTACATCGATCGC
GTTCAGATTGGTGAGATGGGCGATAAGGCGAAGGCTCGTCTAGCCGCGTC
GGTCGCTGCTGCCAGCGCGGGCGGCAATGCGTCTCTCGCAAGGCCTACAG
AGAAGAGTTCAGCAATCGATGGCGCGGCTGGGATGCCCATTGCAAAAACT
GATTCCGCTGGGCAGAAAAGGATCATGTGCAAGAAAGAGCTGACCACGAA
TGAGAAGAAGGAGAGGTCTCAGGTAGCGGTCGTACCCCAACAACCGGCGA
AAGTGGATACGGCGGTGGCTGCTGCTGCTACACCCGTGGCGAAGAGAAAA
GAGGCAAGAGGGGCTAAGGGGAATGGTGTGCTTACACAAAAGCGAGAGGA
CGGCAGCTCATCCGACCAGGAGCACCAGGAGGAGGGGGGGGCTGCAACAA
GCGAGAGCGATGCGAGCTCGGAAATGGTCGATGAAGAAGAGGAGGAGCAT
ATTGGGGGCGAGGCGGCGGCGACGAGCACCGAGAAGCCAAATGGAGTAGC
TGCTGAGAAGCACGTGGATGTCGGAGCAAGAAAGAGGGAAATCAATGAAA
AAGGCGGGAACGAGGAAGGTAGACGCGAGGAGAAACAGGATGAGCAAAAA
ACAGAGGAAGATGATGGTGATGGAATGGAAGCCTCAAAACGGGCGGCTGT
AGGCTTGGAGAATGACGGGGGGGAGGGGAGCGTGGCAAGTGAGAGCGACG
AGAGTGATGGCGAAGAAGAAGAAAACGAAAGCCAAGAGGAGCAAGAGGAG
GCCGATGAAGGCAACACTATGGGTCGGGGCTCTAAGTCTAAGTCTCCACG
CAGCAGCCGCCGCACAAGCGGCGGCGGAGGAGGGTACGGCGGCAATCACA
GCAAAAATGGTCGAGGGCAACAGCAGCGGGGGAGATCGTTCGAGCCGCCG
TCGTCCAAGAAAAGGGGACTTGCGGCCATCACGCCCAGGGCCCCACCACC
GCTACCAGACTCTCTCTCCATGCTGCCAGAGTTCGAAAAGGCGAAGAAGT
TCGTTGGCGCCAAACCCGGTTACATGTTTACCAGTGGCAAGACCGGCGTG
GGCTACTACATCGATCGCGTTCAGATTGGTGAGATGGGCGATAAGGCGAA
GGCTCGTCTAGCCGCGTCGGTCGCTGCTGCCAGCGCGGGCGGCAATGCGT
CTCTCGCAAGGCCTACAGAGAAGAGTTCAGCAATCGATGGCGCGGCTGGG
ATGCCCATTGCAAAAACTGATTCCGCTGGGCAGAAAAGGATCATGTGCAA
GAAAGAGCTGACCACGAATGAGAAGAAGGAGAGGTCTCAGGTAGCGGTCG
TACCCCAACAACCGGCGAAAGTGGATACGGCGGTGGCTGCTGCTGCTACA
CCCGTGGCGAAGAGAAAAGAGGCAAGAGGGGCTAAGGGGAATGGTGTGCT
TACACAAAAGCGAGAGGACGGCAGCTCATCCGACCAGGAGCACCAGGAGG
AGGGGGGGGCTGCAACAAGCGAGAGCGATGCGAGCTCGGAAATGGTCGAT
GAAGAAGAGGAGGAGCATATTGGGGGCGAGGCGGCGGCGACGAGCACCGA
GAAGCCAAATGGAGTAGCTGCTGAGAAGCACGTGGATGTCGGAGCAAGAA
AGAGGGAAATCAATGAAAAAGGCGGGAACGAGGAAGGTAGACGCGAGGAG
AAACAGGATGAGCAAAAAACAGAGGAAGATGATGGTGATGGAATGGAAGC
CTCAAAACGGGCGGCTGTAGGCTTGGAGAATGACGGGGGGGAGGGGAGCG
TGGCAAGTGAGAGCGACGAGAGTGATGGCGAAGAAGAAGAAAACGAAAGC
CAAGAGGAGCAAGAGGAGGCCGATGAAGGCAACACTCAACAGGAGAAAGC
CTCGTTCCAGTCGCTCGGCGTTACAGGGCCCCTGTGCGAGGCTGCGGGTC
AGCTGGGCTGGACCCACGCGACGGAGATTCAGCAGCAAGCTCTCCCTTTG
GCTTTCCAGCAACAGGAGAAAGCCTCGTTCCAGTCGCTCGGCGTTACAGG
GCCCCTGTGCGAGGCTGCGGGTCAGCTGGGCTGGACCCACGCGACGGAGA
TTCAGCAGCAAGCTCTCCCTTTGGCTTTCCAGGGTAAGGATGTCATCGGT
CTCGCGGAGACCGGGTCGGGCAAGACGGGCGCGTTCGCGATTCCCATCCT
CCAGGCGCTGTTGGCAAACCCGCAGAGGCTTTTTGCTGTGGTACTGGCCC
CGACCCGGGAGCTAGCTTTTCAAATCAACGAGGGTAAGGATGTCATCGGT
CTCGCGGAGACCGGGTCGGGCAAGACGGGCGCGTTCGCGATTCCCATCCT
CCAGGCGCTGTTGGCAAACCCGCAGAGGCTTTTTGCTGTGGTACTGGCCC
CGACCCGGGAGCTAGCTTTTCAAATCAACGAGGTCATGGAAGCTCTTGGA
GTGGGCATTGGCCTGAAGACTGTGTGCATCGTGGGTGGCATCGATATGTT
CCAGCAGGTCATGGAAGCTCTTGGAGTGGGCATTGGCCTGAAGACTGTGT
GCATCGTGGGTGGCATCGATATGTTCCAGCAGTCCGTGGCACTTGCCAAG
AAACCTCACGTGGTGATTGCTACTCCTGGCCGCCTGGTTGACCACCTGGA
GAACACGAAAGGCTTCAGCTTGCGGACGGCCAAGTTTTTGGTGCTTGATG
AGGCTGACCGCATGCTCGGCATGTCCGTGGCACTTGCCAAGAAACCTCAC
GTGGTGATTGCTACTCCTGGCCGCCTGGTTGACCACCTGGAGAACACGAA
AGGCTTCAGCTTGCGGACGGCCAAGTTTTTGGTGCTTGATGAGGCTGACC
GCATGCTCGGCATGGACTTCGAAGAAGAGATCAACAAAATTCTGGCGGTG
CTGCCCAGGGAACGCCGCACGTTCCTTTTCAGCGCCACAATGACCTCCAA
GGTGGCCAAGTTGCAGCGTGCTTCTCTCAAGGACCCTGCCAGGGTAAGGA
TGTGGCGTCACCTACAAACGCAGAAGAGCGACTTCGAAGAAGAGATCAAC
AAAATTCTGGCGGTGCTGCCCAGGGAACGCCGCACGTTCCTTTTCAGCGC
CACAATGACCTCCAAGGTGGCCAAGTTGCAGCGTGCTTCTCTCAAGGACC
CTGCCAGGGTAAGGATGTGGCGTCACCTACAAACGCAGAAGAGC
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