mRNA_H-paniculata_contig2130.5594.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2130.5594.1
Unique NamemRNA_H-paniculata_contig2130.5594.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2130.5594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2130contigH-paniculata_contig2130:18470..18867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.293267-CDS-H-paniculata_contig2130:18469..188141622929571.293267-CDS-H-paniculata_contig2130:18469..18814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2130 18470..18814 +
1691480918.7990932-CDS-H-paniculata_contig2130:18469..188141691480918.7990932-CDS-H-paniculata_contig2130:18469..18814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2130 18470..18814 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929571.3117676-UTR-H-paniculata_contig2130:18814..188671622929571.3117676-UTR-H-paniculata_contig2130:18814..18867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2130 18815..18867 +
1691480918.8070202-UTR-H-paniculata_contig2130:18814..188671691480918.8070202-UTR-H-paniculata_contig2130:18814..18867Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2130 18815..18867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2130.5594.1prot_H-paniculata_contig2130.5594.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2130 18470..18814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2130.5594.1

>prot_H-paniculata_contig2130.5594.1 ID=prot_H-paniculata_contig2130.5594.1|Name=mRNA_H-paniculata_contig2130.5594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
RDGDRDRASGGIEDTEGTGDGGGTSSGGESRGEGGTGQNEDHGSSSRGSV
SCPAKQGGSRRRVGGPTAVRKGGKGGYGGRGGGVNGVRGYPGPGSSGRGV
GGRLRQTSPLARVA*
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mRNA from alignment at H-paniculata_contig2130:18470..18867+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2130.5594.1 ID=mRNA_H-paniculata_contig2130.5594.1|Name=mRNA_H-paniculata_contig2130.5594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=398bp|location=Sequence derived from alignment at H-paniculata_contig2130:18470..18867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGATGGAGATAGAGACAGAGCCAGCGGCGGCATCGAGGACACAGAAGG
AACAGGCGACGGGGGCGGAACTAGCAGCGGGGGAGAAAGCCGCGGTGAAG
GTGGTACAGGACAGAACGAGGACCATGGTTCGAGCAGTCGAGGCTCGGTA
AGCTGCCCGGCGAAGCAGGGCGGCAGTCGACGGAGGGTTGGAGGCCCCAC
GGCTGTGAGAAAGGGAGGGAAAGGCGGTTACGGTGGTCGAGGGGGAGGCG
TTAATGGTGTGCGAGGTTATCCAGGACCTGGTTCCTCGGGTAGGGGCGTC
GGAGGACGCCTTCGACAGACCTCGCCCCTGGCGCGCGTAGCTTGACAGGG
GAGAAGGGCAGGACACCAAGACGGACGGGGGCGAGGGCACGGTGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2130:18470..18867+

>mRNA_H-paniculata_contig2130.5594.1 ID=mRNA_H-paniculata_contig2130.5594.1|Name=mRNA_H-paniculata_contig2130.5594.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig2130:18470..18867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGATGGAGATAGAGACAGAGCCAGCGGCGGCATCGAGGACACAGAAGG
AACAGGCGACGGGGGCGGAACTAGCAGCGGGGGAGAAAGCCGCGGTGAAG
GTGGTACAGGACAGAACGAGGACCATGGTTCGAGCAGTCGAGGCTCGGTA
AGCTGCCCGGCGAAGCAGGGCGGCAGTCGACGGAGGGTTGGAGGCCCCAC
GGCTGTGAGAAAGGGAGGGAAAGGCGGTTACGGTGGTCGAGGGGGAGGCG
TTAATGGTGTGCGAGGTTATCCAGGACCTGGTTCCTCGGGTAGGGGCGTC
GGAGGACGCCTTCGACAGACCTCGCCCCTGGCGCGCGTAGCTTGAAGAGA
TGGAGATAGAGACAGAGCCAGCGGCGGCATCGAGGACACAGAAGGAACAG
GCGACGGGGGCGGAACTAGCAGCGGGGGAGAAAGCCGCGGTGAAGGTGGT
ACAGGACAGAACGAGGACCATGGTTCGAGCAGTCGAGGCTCGGTAAGCTG
CCCGGCGAAGCAGGGCGGCAGTCGACGGAGGGTTGGAGGCCCCACGGCTG
TGAGAAAGGGAGGGAAAGGCGGTTACGGTGGTCGAGGGGGAGGCGTTAAT
GGTGTGCGAGGTTATCCAGGACCTGGTTCCTCGGGTAGGGGCGTCGGAGG
ACGCCTTCGACAGACCTCGCCCCTGGCGCGCGTAGCTTGA
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