mRNA_H-paniculata_contig213.5589.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig213.5589.1
Unique NamemRNA_H-paniculata_contig213.5589.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: D8LMW1_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW1_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.580e-52
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 VTPEDLALREDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVVQDRSGK 276
            VT EDLALREDICYQIFGDVG LIRDFSCAWDHKV+MHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARC+KGNS IFIPNV+VVQD+SGK
Sbjct:   54 VTAEDLALREDICYQIFGDVGPLIRDFSCAWDHKVVMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCSKGNSAIFIPNVVVVQDKSGK 145
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A6H5KHE3_9PHAE (VASt domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE3_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.780e-52
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 VTPEDLALREDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVVQDRSGK 276
            VT EDLALREDICYQIFGDVG LIRDFSCAWDHKV+MHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARC+KGNS IFIPNV+VVQD+SGK
Sbjct:   32 VTAEDLALREDICYQIFGDVGPLIRDFSCAWDHKVVMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCSKGNSAIFIPNVVVVQDKSGK 123
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.240e-21
Identity = 43/80 (53.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   19 ALREDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            A R++I   IFGDVGA+ RDFSCA + K+L+HGR+YVTER +CFY+N FG E K+ + +  V    K N+ +FIPN I V
Sbjct:   44 AWRDEIVRTIFGDVGAIRRDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHVTCVTKENTAVFIPNAIAV 123
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.710e-20
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 1 
Query:   25 REDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            R++I   IFGDVGA+ RDFSCA + K+L+HGR+YVTER +CFY+N FG E K+ + +  +    K  + +FIPN I V
Sbjct:  150 RDEIVRTIFGDVGAIRRDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSYITCITKEYTAVFIPNAIAV 227
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.500e-19
Identity = 40/87 (45.98%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:    4 TPEDLALREDICYQIFGD-VGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVVQ 261
            TPED + R++I  QIFG+ +G +  D SCA + K+L+HGR+Y+T++ +CFY+NFFG E K+ +    V   +KGN+ + IPN I++Q
Sbjct:   95 TPED-SFRDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQVRTLSKGNTALLIPNCIIIQ 180
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.830e-19
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:   25 REDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            R +I   IFGDVG + +DFSCA + K+L+HGRMYVT++ +CFY+N FG E K+ + +  +A   K  + +FIPN I V
Sbjct:   27 RNEIVRTIFGDVGTIKKDFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPYSHIACVTKEYTAVFIPNAIAV 104
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN)

HSP 1 Score: 75.1 bits (183), Expect = 7.190e-16
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   73 RDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            RDFSCA + K+L+HGR+YVTER +CFY+N FG E K+ + +  +    K  + +FIPN I V
Sbjct:    1 RDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPYSHITCITKEYTAVFIPNAIAV 62
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BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.870e-15
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   25 REDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            REDI   IFG+VG  + DFSCA + ++L+HGRMYVT   +CFY+N FG E  + +    +    K  + +FIPN I +
Sbjct:   19 REDIVRSIFGEVGKPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAI 96
[Close]
BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 3.880e-15
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:   25 REDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            REDI   IFG+VG  + DFSCA + ++L+HGRMYVT   +CFY+N FG E  + +    +    K  + +FIPN I +
Sbjct:   58 REDIVRSIFGEVGKPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPFCHMRCITKEKTALFIPNAIAI 135
[Close]
BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.310e-13
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   76 DFSCAWDHKVLMHGRMYVTERRLCFYANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVV 258
            DFSCA +  VL+HGRMY++ R +CFY+N FGLE K+ + +  +    K N+ + IPN I +
Sbjct:    6 DFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPYSHIKNITKENTAMVIPNAIAI 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig213.5589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMW1_ECTSI2.580e-5292.39VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KHE3_9PHAE2.780e-5292.39VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A8J2ST97_9STRA1.240e-2153.75Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3NLX8_9STRA9.710e-2051.28Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W7TDU9_9STRA4.500e-1945.98Gram domain-containing protein 1a n=1 Tax=Nannochl... [more]
A0A7S2STC3_9STRA5.830e-1948.72Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y4G3_AURAN7.190e-1650.00GRAM domain-containing protein (Fragment) n=1 Tax=... [more]
D7FKF6_ECTSI3.870e-1544.87VASt domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L0Q2_9PHAE3.880e-1544.87VASt domain-containing protein (Fragment) n=1 Tax=... [more]
A0A482S830_9ARCH1.310e-1345.90GRAM domain-containing protein n=1 Tax=archaeon Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig213contigH-paniculata_contig213:124..2246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score187.2
Seed ortholog evalue3.5e-45
Seed eggNOG ortholog2880.D8LMW1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular sterol transport
EggNOG OGsKOG1032@1,KOG1032@2759
Ec32 ortholog descriptionGRAM domain
Ec32 orthologEc-02_003850.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size276
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig213.5589.1prot_H-paniculata_contig213.5589.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig213 124..2246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.2298143-CDS-H-paniculata_contig213:123..2081622929570.2298143-CDS-H-paniculata_contig213:123..208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 124..208 -
1691480918.2442582-CDS-H-paniculata_contig213:123..2081691480918.2442582-CDS-H-paniculata_contig213:123..208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 124..208 -
1622929570.2445269-CDS-H-paniculata_contig213:969..10841622929570.2445269-CDS-H-paniculata_contig213:969..1084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 970..1084 -
1691480918.261344-CDS-H-paniculata_contig213:969..10841691480918.261344-CDS-H-paniculata_contig213:969..1084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 970..1084 -
1622929570.2822444-CDS-H-paniculata_contig213:2170..22461622929570.2822444-CDS-H-paniculata_contig213:2170..2246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 2171..2246 -
1691480918.2708213-CDS-H-paniculata_contig213:2170..22461691480918.2708213-CDS-H-paniculata_contig213:2170..2246Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig213 2171..2246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig213.5589.1

>prot_H-paniculata_contig213.5589.1 ID=prot_H-paniculata_contig213.5589.1|Name=mRNA_H-paniculata_contig213.5589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
VTPEDLALREDICYQIFGDVGALIRDFSCAWDHKVLMHGRMYVTERRLCF
YANFFGLEAKMSLRHEDVARCNKGNSVIFIPNVIVVQDRSGK
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mRNA from alignment at H-paniculata_contig213:124..2246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig213.5589.1 ID=mRNA_H-paniculata_contig213.5589.1|Name=mRNA_H-paniculata_contig213.5589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2123bp|location=Sequence derived from alignment at H-paniculata_contig213:124..2246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTCCTGAAGATCTGGCGTTGAGAGAAGACATTTGCTACCAGATCTT
CGGTGACGTCGGGGCTTTAATCAGAGGTTCGTCGTTTCCGCTTGTTTGCT
TTTCACGTGTTCAAACCGCACTGGTTTGCTGTGCGTTTCAGGCGCCCTCT
CCAATTTTGTCGTCGTGTCTTTTTTCAAGATGTCAGCCGAGTGATGGGAA
TCATTTTTATCATCTCTCCATTTTTTTATTCGGACTGTCGTCATGACCAG
CACGCGTTTGTCCATACTGTCTGTGTGGCACTCGGCTATTGTAGCGCGTA
CTAAATACCGAGACAACGCTCTCCGACTTTCTCGTTTTCGAGCGCTGCAG
CACTATGAGGTCTTCGCTGGTCTAAAGCTCTGCCGTGGGTTAACAATCTA
GACCAGGGAGTATTGGCACATGAAGGTTGCCATCCCTAAGTTCTTCCCCT
TACCGTACGATGGTAACCTAAATGACACAAAAAACGCTTCCCCCGCGTGC
GGTATGTCCTCGTACTTTGCACTGCTTTATTTTAGCCCATGGCTTTGGAG
CTATAGGCACCACCCTTTGCTTAGTGTGGAACACCGCCTTTGACACACCC
GAAGTATGTCCGATACCCCCCACGGTTTGACTGTAATTGGTCTGGAAATG
GGCTGAACGGAGAATATGTATACTGGAGAATATTTGGTGCGAACGGCAAA
GCGTAAGGCTGCCTGTCGATTGATTGGGACGACTGTTTTTCATGTTAGTT
GGCACGAAGAGGTTAATTCAAATTTATATGAAAATGGGGAGGGGGGCGAG
GAGGGAGATATCTTGGGGAGTGAACAGCAAATTGTGAGACCTTGGATCAA
TTGGAACTGCTGTTTTTCATGTTACTTAACAAAAAGAAATCAATTTGAAA
TTGGTCTACAGAATGGGATGAAATTTGCCCGGTACAACACGACCGAAATA
TGTCCAGAATGGAGATGATCCCATAGTCATGATCCATCTGTAATTTTTCG
GTCCTGCTTGCTCGTTGTACGTTGTAGGGATGTTTGTGGTGCGGTCTACT
CTGTGCCCAATGGGATATGACTGAGTGATGATCTAATATGATCATGATCC
CCCTCCCTTCCCCTCCCTGTCCCCGACCGTCCCGTACCAATCTACGAACG
GTGGTGGGTCAGACTTCTCGTGTGCTTGGGACCATAAGGTGTTGATGCAC
GGGAGGATGTATGTGACAGAACGTCGTCTTTGTTTTTACGCCAACTTCTT
CGGCCTCGAGGCAAAAATGTCCTTGAGGTGAGAATGGGATGGCGTCGGCG
ATGGTGGTGGTGACCGGGGGGGTGAGGGGGAAACATTGAGGGTATGCAGC
AGTTGAAATCAACTCTGTGTACCCTTGTCAGCGAAGTTAGACCCCAATAG
GGGGGGGGGTCGTACTGGATAACTACATGAAAGCAACGCACGTTAGGATG
TACGTTGTGTACAGCATTGATGCCTGTTGTTTAGGTGATGTCGGGTCTGT
CGCGTGATTGCTTGCTTTTGCTGTGTGAGTGCATGTGCTGATCATGTATG
CCGTTTGTGGGTAAGTAGGTTTCTTCTTGCAACTTACTTTGCAGCTGTCA
CGGTGGTATCGTAGCAACTGCAATAAACATGCTGGGTGTGGGTCTATGTC
TTTGGGAGTGACCTCATGCTGTTTACTCCCTTTGGCACGGGAATTGTCGC
CAGGCGAGCTTTCTGGAGCTATGTTTTCGACAACCTCAAGGGGTCCCTAA
AATGCCTCCCCTGCTGTTGCGTCATTACCTTTGGTGTCGGTGTTTTTTGC
GGCTGACCTCGACGGTCTAAGCAAGTTGTTGGCTGTAGCGTTACTGTCTG
GCTTCGATTTCTGCCCACATTGTCTACACGTCAGGTGAACACCGTCTTAC
GTATATGTATATGTATATGCCCGTGTTGCACCAGACATGGCCGAAAACAG
TCTAAACGAAACGTTCACGTAACGCATACACACGTTGGTGACATGCTGTT
TGCCTGGCCATTTCGACTGAAAAAAACGAAAACAACAGACACGAGGACGT
CGCTCGATGTAACAAGGGAAACTCGGTCATCTTCATCCCCAATGTGATCG
TCGTCCAGGACAGGTCTGGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig213:124..2246-

>mRNA_H-paniculata_contig213.5589.1 ID=mRNA_H-paniculata_contig213.5589.1|Name=mRNA_H-paniculata_contig213.5589.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig213:124..2246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTCCTGAAGATCTGGCGTTGAGAGAAGACATTTGCTACCAGATCTT
CGGTGACGTCGGGGCTTTAATCAGAGGTTACTCCTGAAGATCTGGCGTTG
AGAGAAGACATTTGCTACCAGATCTTCGGTGACGTCGGGGCTTTAATCAG
AGACTTCTCGTGTGCTTGGGACCATAAGGTGTTGATGCACGGGAGGATGT
ATGTGACAGAACGTCGTCTTTGTTTTTACGCCAACTTCTTCGGCCTCGAG
GCAAAAATGTCCTTGAGACTTCTCGTGTGCTTGGGACCATAAGGTGTTGA
TGCACGGGAGGATGTATGTGACAGAACGTCGTCTTTGTTTTTACGCCAAC
TTCTTCGGCCTCGAGGCAAAAATGTCCTTGAGACACGAGGACGTCGCTCG
ATGTAACAAGGGAAACTCGGTCATCTTCATCCCCAATGTGATCGTCGTCC
AGGACAGGTCTGGAAAGACACGAGGACGTCGCTCGATGTAACAAGGGAAA
CTCGGTCATCTTCATCCCCAATGTGATCGTCGTCCAGGACAGGTCTGGAA
AG
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