mRNA_H-paniculata_contig21295.5588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21295.5588.1
Unique NamemRNA_H-paniculata_contig21295.5588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A836CAV3_9STRA (Leo1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.950e-19
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:    1 EADEFKYTTNIVR----------WRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDIGEHSIDR 198
            E + FK+TTNI+R          WRH++D  G LE    G PIRE+N R+VKWSDGS+QL+VG+E FD+ EH++D+
Sbjct:  129 EDETFKFTTNIIRQAYFNSLTLEWRHRKDASGALEYDEHGEPIRETNTRLVKWSDGSLQLMVGEEVFDVSEHALDK 204
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: D7FUQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ9_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 8.250e-13
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 EADEFKYTTNIVRWRHKRDNRGRLELGHDGRPIRESNARVVK 126
            EADEFK+TTNI+RWRHKR N GR ELG DGR +RESN R+VK
Sbjct:   97 EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVK 138
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A7S1FRB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRB7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.690e-12
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 EADEFKYTTNIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEA 168
            E   FK+  NI+RW   RDNRG +     GRP+R SNAR+VKWSDGS  L+VG EA
Sbjct:   70 EERRFKFPHNIIRWGFVRDNRGGIARDPSGRPLRRSNARMVKWSDGSWTLVVGAEA 125
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A3S1HL45_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1HL45_ELYCH)

HSP 1 Score: 68.9 bits (167), Expect = 5.530e-12
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   28 NIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            N VRWR K D  G   L  +G+P+RESNAR+VKWSDGSM L +GDE FD+
Sbjct:  507 NTVRWRKKLDADGNEMLDEEGKPLRESNARIVKWSDGSMSLHLGDEIFDV 556
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A2R5G957_9STRA (RNA polymerase-associated protein LEO1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G957_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 9.000e-11
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   28 NIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            NI+RWR+K ++R  +E   DG+P+ ESN+R V+WSDGS+QL +GDE FD+
Sbjct:  155 NIIRWRYKMNDRREIEK-KDGKPVIESNSRFVEWSDGSVQLYIGDEVFDV 203
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A8J1XS43_OWEFU (Ofus.G061499 protein (Fragment) n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XS43_OWEFU)

HSP 1 Score: 65.1 bits (157), Expect = 1.230e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   28 NIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            N +RWR K+D  G   L  +G P+RESNAR+++WSDGSM L +G E FD+
Sbjct:  193 NTIRWRDKKDAEGNQILDEEGNPVRESNARMIRWSDGSMSLHLGVEVFDV 242
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A2R2MJW2_LINUN (RNA polymerase-associated protein LEO1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MJW2_LINUN)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-10
Identity = 25/50 (50.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   28 NIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            N +RWR K+D  G + +  +G+ +RESNAR+++WSDGSM L +G+E FD+
Sbjct:  370 NTIRWRPKKDEFGNIMMDENGKQLRESNARIIRWSDGSMSLHLGNEVFDV 419
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: UPI0007113C22 (RNA polymerase-associated protein leo1 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007113C22)

HSP 1 Score: 63.5 bits (153), Expect = 3.140e-10
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   31 IVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDE 165
            ++RWR K+D+ G +     G+PIRESNAR+VKWSDGS QLL+GD+
Sbjct:  112 LIRWRWKKDSNGIVIRDARGKPIRESNARIVKWSDGSYQLLIGDD 156
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A0B7ALU3_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7ALU3_9EUPU)

HSP 1 Score: 63.9 bits (154), Expect = 3.160e-10
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   28 NIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            N +RWR K D  G      + +P+RESNARVVKW+DGSM L +GDE FD+
Sbjct:  253 NTIRWRRKFDEEGNEMKDENDQPVRESNARVVKWTDGSMSLHLGDEIFDV 302
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BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Match: A0A663ECI3_AQUCH (RNA polymerase-associated protein LEO1 n=10 Tax=Aves TaxID=8782 RepID=A0A663ECI3_AQUCH)

HSP 1 Score: 63.2 bits (152), Expect = 5.950e-10
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 ADEFKYTTNIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQLLVGDEAFDI 177
            ++  KY  N +RWR +RD         +G  IRESNAR+VKWSDGSM L +G+E FD+
Sbjct:  385 SNTIKYVENTIRWRMRRD--------EEGNEIRESNARIVKWSDGSMSLHLGNEVFDV 434
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21295.5588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAV3_9STRA7.950e-1951.32Leo1-like protein-domain-containing protein n=1 Ta... [more]
D7FUQ9_ECTSI8.250e-1376.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1FRB7_9STRA1.690e-1257.14Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A3S1HL45_ELYCH5.530e-1262.00Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A2R5G957_9STRA9.000e-1156.00RNA polymerase-associated protein LEO1 n=1 Tax=Hon... [more]
A0A8J1XS43_OWEFU1.230e-1054.00Ofus.G061499 protein (Fragment) n=1 Tax=Owenia fus... [more]
A0A2R2MJW2_LINUN1.700e-1050.00RNA polymerase-associated protein LEO1 n=1 Tax=Lin... [more]
UPI0007113C223.140e-1060.00RNA polymerase-associated protein leo1 n=1 Tax=Bla... [more]
A0A0B7ALU3_9EUPU3.160e-1056.00Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A663ECI3_AQUCH5.950e-1050.00RNA polymerase-associated protein LEO1 n=10 Tax=Av... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21295contigH-paniculata_contig21295:384..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog36331.EPrPI00000016648
Preferred nameLEO1
KEGG koko:K15177
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001501,GO:0001650,GO:0001672,GO:0001704,GO:0001706,GO:0001711,GO:0002682,GO:0002683,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006282,GO:0006325,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006356,GO:0006357,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006996,GO:0007275,GO:0007369,GO:0007399,GO:0007417,GO:0007492,GO:0007507,GO:0008023,GO:0008150,GO:0008152,GO:0008213,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009910,GO:0009987,GO:0010001,GO:0010048,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010847,GO:0014031,GO:0014032,GO:0014033,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016569,GO:0016570,GO:0016571,GO:0016574,GO:0016591,GO:0016593,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0021510,GO:0021515,GO:0021529,GO:0021782,GO:0022008,GO:0022607,GO:0030154,GO:0030318,GO:0030880,GO:0031056,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031399,GO:0031440,GO:0031442,GO:0031445,GO:0031452,GO:0031454,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033043,GO:0033044,GO:0033182,GO:0033523,GO:0033696,GO:0034243,GO:0034641,GO:0034645,GO:0034654,GO:0034968,GO:0035206,GO:0035987,GO:0036211,GO:0042063,GO:0042127,GO:0043009,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043473,GO:0043631,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044877,GO:0045165,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045798,GO:0045893,GO:0045935,GO:0045943,GO:0045944,GO:0046483,GO:0048066,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048580,GO:0048581,GO:0048583,GO:0048598,GO:0048646,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048709,GO:0048731,GO:0048762,GO:0048831,GO:0048856,GO:0048863,GO:0048864,GO:0048869,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0050931,GO:0050936,GO:0051052,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051219,GO:0051239,GO:0051241,GO:0051246,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0055029,GO:0060255,GO:0060485,GO:0060795,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0070647,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080134,GO:0080135,GO:0080182,GO:0090262,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0099122,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902275,GO:1902494,GO:1902680,GO:1903311,GO:1903313,GO:1903320,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1904837,GO:1904888,GO:1905268,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2000819,GO:2001020,GO:2001141,GO:2001166,GO:2001173,GO:2001207,GO:2001209,GO:2001251
EggNOG free text desc.leo1. Source PGD
EggNOG OGs1MCPE@121069,KOG2428@1,KOG2428@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929570.1799345-CDS-H-paniculata_contig21295:383..5961622929570.1799345-CDS-H-paniculata_contig21295:383..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21295 384..596 +
1691480918.2337368-CDS-H-paniculata_contig21295:383..5961691480918.2337368-CDS-H-paniculata_contig21295:383..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21295 384..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21295.5588.1prot_H-paniculata_contig21295.5588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21295 384..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21295.5588.1

>prot_H-paniculata_contig21295.5588.1 ID=prot_H-paniculata_contig21295.5588.1|Name=mRNA_H-paniculata_contig21295.5588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
EADEFKYTTNIVRWRHKRDNRGRLELGHDGRPIRESNARVVKWSDGSMQL
LVGDEAFDIGEHSIDRWGVL*
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mRNA from alignment at H-paniculata_contig21295:384..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21295.5588.1 ID=mRNA_H-paniculata_contig21295.5588.1|Name=mRNA_H-paniculata_contig21295.5588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig21295:384..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCTGACGAGTTCAAGTATACAACCAACATCGTTCGGTGGCGGCACAA
GCGGGACAACCGCGGACGGTTGGAGCTTGGACATGACGGCCGACCAATCA
GGGAGTCCAACGCCCGCGTGGTGAAGTGGAGCGACGGGTCGATGCAGCTT
TTGGTCGGGGACGAGGCGTTCGATATCGGGGAACATTCCATAGACAGGTG
GGGTGTATTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig21295:384..596+

>mRNA_H-paniculata_contig21295.5588.1 ID=mRNA_H-paniculata_contig21295.5588.1|Name=mRNA_H-paniculata_contig21295.5588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig21295:384..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCTGACGAGTTCAAGTATACAACCAACATCGTTCGGTGGCGGCACAA
GCGGGACAACCGCGGACGGTTGGAGCTTGGACATGACGGCCGACCAATCA
GGGAGTCCAACGCCCGCGTGGTGAAGTGGAGCGACGGGTCGATGCAGCTT
TTGGTCGGGGACGAGGCGTTCGATATCGGGGAACATTCCATAGACAGGTG
GGGTGTATTGTAAGAAGCTGACGAGTTCAAGTATACAACCAACATCGTTC
GGTGGCGGCACAAGCGGGACAACCGCGGACGGTTGGAGCTTGGACATGAC
GGCCGACCAATCAGGGAGTCCAACGCCCGCGTGGTGAAGTGGAGCGACGG
GTCGATGCAGCTTTTGGTCGGGGACGAGGCGTTCGATATCGGGGAACATT
CCATAGACAGGTGGGGTGTATTGTAA
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