mRNA_H-paniculata_contig21293.5587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A6H5JBB4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB4_9PHAE) HSP 1 Score: 359 bits (921), Expect = 3.700e-115 Identity = 177/250 (70.80%), Postives = 205/250 (82.00%), Query Frame = 1
Query: 1 YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLDLGGSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTGCSISSPAIGKNCLAVGSSMSGAIRLSPPSGDMDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQGSCELQLNSGTSMSCPLTAGAAALVRQYFVDGFHSADAEARG-LCSASEKTTAASDGVEFACEAFVPTGALIKV 747
YDCD YW CLSDDR ETL++A GVA GA +AVLDLG S+ L Q LGG MWE +AGTGAR+HS SWGF D+PC VDD+SVSFD WAYENPEHLL+FAAGNLGDD+TGCSI+SPA+ KNCLAVGSSMSG +RLSP GDMD+VSDFSS+GPTTD RIKPD++APGHY+FSA+NGG GSC+L NSGTSMSCP+ AGAAALVRQY VDGF++ D ARG LC+A +AC+AF P+GAL+KV
Sbjct: 618 YDCDVYWEAACLSDDRSETLEDAKGVAPGAKLAVLDLGSSDSLEQALGGTMWEVSAGTGARIHSASWGFIDEPCTVDDSSVSFDQWAYENPEHLLVFAAGNLGDDMTGCSIASPAVSKNCLAVGSSMSGELRLSP--GDMDEVSDFSSMGPTTDDRIKPDILAPGHYIFSASNGGDGSCQLDRNSGTSMSCPIAAGAAALVRQYLVDGFYAEDVGARGSLCAAGTDPA-------WACDAFSPSGALVKV 858
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: D8LK25_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK25_ECTSI) HSP 1 Score: 353 bits (907), Expect = 1.770e-110 Identity = 173/249 (69.48%), Postives = 205/249 (82.33%), Query Frame = 1
Query: 1 YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLDLGGSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTGCSISSPAIGKNCLAVGSSMSGAIRLSPPSGDMDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQGSCELQLNSGTSMSCPLTAGAAALVRQYFVDGFHSADAEARG-LCSASEKTTAASDGVEFACEAFVPTGALIK 744
YDCD YW CLSDDR ETL++A GVA GA +AVLDLG S+ L Q LGG MWE +AGTGAR+HS SWGF D+PC VDD++VSFD WAYENPEHLL+FAAGNLGDD+ GCSI+SPA+ KNCLAVGSSMSG +RLSP GD+D+VSDFSS+GPTTD RIKPD++APGHY+FSA+NGG+GSC+L NSGTSMSCP+ AGAAALVRQY VDGF++ D ARG LC+A+ +AC+AF P+GAL+K
Sbjct: 529 YDCDVYWETACLSDDRSETLEDAKGVAPGAKLAVLDLGSSDSLEQALGGTMWEVSAGTGARIHSASWGFIDEPCTVDDSAVSFDEWAYENPEHLLVFAAGNLGDDMEGCSIASPALSKNCLAVGSSMSGELRLSP--GDLDEVSDFSSLGPTTDDRIKPDILAPGHYIFSASNGGEGSCQLDRNSGTSMSCPIAAGAAALVRQYLVDGFYADDVAARGSLCAAATDPA-------WACDAFSPSGALVK 768
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: D8LBZ2_ECTSI (Subtilisin (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ2_ECTSI) HSP 1 Score: 192 bits (488), Expect = 1.030e-53 Identity = 122/265 (46.04%), Postives = 158/265 (59.62%), Query Frame = 1
Query: 4 DCDTYWPVHCLSDDREETLKEASGVARGATIAVLD-LGGSEGLH-QVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTGCSISSPAIGKNCLAVGSSMSGAIRLS-------PPSGD-----MDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQGS--CELQLNSGTSMSCPLTAGAAALVRQYFV-DGFHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIKV 747
DCD +CL DD ETL++ GVARGA +A+ D L G+ ++ G MWE A G++L S SWG CE V +D + Y N + LL+FAAGN G++ +GC++ SPA+ KN LAVG+S SG RLS P GD +D ++ FSS GPT DGRIKP+VVAPG ++SAA GG G+ C L +GTSMS P+ AGAAALVRQYF + F++ D E RG C + F CE F P+ A +KV
Sbjct: 369 DCDDRPEEYCLGDDEAETLQQHGGVARGAQLAIFDILDDYTGIGIEMAGNGMWEPAMEAGSKLSSNSWGIYA-YCEYLSYDVLYDDFMYRNQDQLLLFAAGNDGEEWSGCTMGSPAVAKNVLAVGASTSGPGRLSFTDEDGDPTDGDSRVQDIDAMAYFSSFGPTLDGRIKPEVVAPGDMIYSAAGGGDGNYTCRLWQYAGTSMSTPVVAGAAALVRQYFKNETFYTHDVEERGFCDS------------FGCEPFAPSAATVKV 620
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A6H5K229_9PHAE (Subtilisin n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K229_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.620e-52 Identity = 122/245 (49.80%), Postives = 160/245 (65.31%), Query Frame = 1
Query: 31 CLSDDREETLKEASGVARGATIAVLDLGGSE-GLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGD-DVTGCSISSPAIGKNCLAVGSSMSGAIRLSPPSGD--MDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQGS--CELQLNSGTSMSCPLTAGAAALVRQYFVDG-FHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
CLSD+ +ETL + G+A+GA +++ D+ GL +VLG +WE G ++HS S G D C ++ + +D + YENPE+LLIFAAGN G+ + + C+++SPAIGKN LAVG+S SG R+ G +D V+DFSS G TTDGRIKP+VVAPG V+SAA+ G S C L GTSMSCP+ AGAAA+VRQYFVD F++AD ARG CS DG F CE F P+ A +K
Sbjct: 548 CLSDEVDETLTKNGGMAQGAKLSIFDVFFEVFGLIEVLGNGVWEPCLEAGCKVHSLSLG-GDTLCTPGESEILYDDFMYENPENLLIFAAGNDGETERSVCTMASPAIGKNVLAVGASTSGDTRVISTEGGAGIDMVADFSSYGFTTDGRIKPEVVAPGDMVYSAASDGTDSHSCRLWAYQGTSMSCPIVAGAAAMVRQYFVDETFYTADVTARGFCS---------DG--FICEGFSPSAATVK 780
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: D8LNG6_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG6_ECTSI) HSP 1 Score: 187 bits (475), Expect = 1.220e-50 Identity = 120/256 (46.88%), Postives = 155/256 (60.55%), Query Frame = 1
Query: 1 YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLDL--GGSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGD-DVTGCSISSPAIGKNCLAVGSSMSGAIRLSPPSG--DMDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQG--SCELQLNSGTSMSCPLTAGAAALVRQYFVDG-FHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
Y CD CLSDD ETL G+A+GA +A+ D+ GG + + G ++WE G +LHS S G D C + + D + YEN E+LLIFAAGN G + + C+I++P IGKN LA+G+S SG R+ G +D V++FSS G TTD RIKP+VVAPG V+SAA+ G SC L GTSMSCP+ AGAAA++RQYFVD F++AD ARG CS DG F CE F P+ A +K
Sbjct: 502 YGCDNSTDTTCLSDDVPETLSNNGGMAQGAKLAIFDVFYGGYDASSSI-GNNLWEVCTEAGCKLHSNSLG-ADFECSIASWDILNDQFMYENAENLLIFAAGNEGGIERSTCTINTPGIGKNSLAIGASTSGDTRVISTVGATGIDTVAEFSSWGFTTDDRIKPEVVAPGDSVYSAASDGTDTHSCRLWAYEGTSMSCPIVAGAAAMIRQYFVDETFYTADVTARGFCS---------DG--FICEGFSPSAATVK 744
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A6H5JKA8_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKA8_9PHAE) HSP 1 Score: 187 bits (475), Expect = 1.540e-50 Identity = 119/264 (45.08%), Postives = 154/264 (58.33%), Query Frame = 1
Query: 4 DCDTYWPVHCLSDDREETLKEASGVARGATIAVLDL-GGSEGLH-QVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTGCSISSPAIGKNCLAVGSSMSGAIRLS-------PPSGD-----MDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQGS--CELQLNSGTSMSCPLTAGAAALVRQYFV-DGFHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
DCD +CL DD ETL++ GVARGA +A+ D+ G+ + G MWE A G++L S SWG C+ V FD + Y N + LL+FAAGN GDD +GC++ +PA+ KN LAVG+S SG RLS P GD +D ++ FSS GPT D RIKP+VVAPG ++SAA G G+ C L +GTSMS P+ AGAAALVRQYF + F++ D E RG C + F CE F P+ A +K
Sbjct: 652 DCDDLPEEYCLGDDEAETLQQHGGVARGAQLAIFDIINDYTGVGIDMAGNGMWEPAMEAGSKLSSNSWGIYA-YCDYLSLDVLFDDFMYRNQDQLLLFAAGNDGDDWSGCTMGTPALAKNVLAVGASTSGPGRLSFTDEDGDPTDGDSRVQDIDAMAYFSSFGPTLDNRIKPEVVAPGDMIYSAAGSGDGNYTCRLWQYAGTSMSTPIVAGAAALVRQYFKNETFYAHDVEERGFCDS------------FGCEPFAPSAATVK 902
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A6H5K365_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K365_9PHAE) HSP 1 Score: 185 bits (469), Expect = 2.030e-50 Identity = 116/255 (45.49%), Postives = 151/255 (59.22%), Query Frame = 1
Query: 1 YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLDLG-GSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLG-DDVTGCSISSPAIGKNCLAVGSSMSGAIRLSPPSG--DMDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQG--SCELQLNSGTSMSCPLTAGAAALVRQYFVDG-FHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
Y CD CLSDD ETL G+A+GA +A+ D+ G +G ++WE G +LHS S G D C + + D + YEN EHLLIFAAGN G ++ + C+I++P IGKN LA+G+S SG R+ G ++ V++FSS G TTD RIKP+VVAPG V+SAA+ G SC L GTSMSCP+ AGAAA++RQYF+D F+ AD ARG CS F CE F P+ A +K
Sbjct: 263 YGCDNSTDTTCLSDDVPETLSNNGGMAQGAKLAIFDVFYGDYDASSSIGNNLWEVCTEAGCKLHSNSLG-ADFECSIASWDILNDQFMYENAEHLLIFAAGNEGGEERSTCTINTPGIGKNSLAIGASTSGDTRVISTVGATGINTVAEFSSWGFTTDDRIKPEVVAPGDSVYSAASDGTDTHSCRLWAYEGTSMSCPIVAGAAAMIRQYFMDETFYMADVTARGFCSDV-----------FICEGFSPSAATVK 505
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A2I6U1R2_SACJA (Subtilisin (Fragment) n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1R2_SACJA) HSP 1 Score: 185 bits (469), Expect = 5.840e-50 Identity = 119/267 (44.57%), Postives = 155/267 (58.05%), Query Frame = 1
Query: 4 DCDTYWPVHCLSDDREETLKEASGVARGATIAVLDL--GGSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTG---CSISSPAIGKNCLAVGSSMSGAIRLSPPSGD------------MDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQG--SCELQLNSGTSMSCPLTAGAAALVRQYFVD-GFHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
DCD CLSDD +TL + G+A+GA +A D+ GS G H V G +WE G ++HS S G D C V + V +D + Y NPE+L++ AAGN GD G C++ SPAIGKN LAVG++ SG R++ S D +D V+ FSS GPT DGRIKP+VVAPG ++SA + G SC L SGTSM+CP+ AGA+A+VRQYF+D F+ AD ARG SD CE+F P+ A +K
Sbjct: 488 DCDDATDPRCLSDDVGQTLADHGGMAQGAKLAFFDVFADGSSGTHFV-GNGLWEPCLEAGCKIHSMSIG-ADFECSVCEKDVLYDDFMYNNPENLVVVAAGNAGDTEDGRTVCTMYSPAIGKNALAVGATSSGETRITKTSADGDLIDGTNGYADVDTVAQFSSYGPTQDGRIKPEVVAPGDAIYSARSDGSDNHSCRLSAKSGTSMACPIVAGASAMVRQYFMDESFYVADQAARGW----------SDDSGRRCESFSPSSATVK 742
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: D8LU20_ECTSI (Subtilisin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU20_ECTSI) HSP 1 Score: 183 bits (464), Expect = 3.880e-49 Identity = 129/299 (43.14%), Postives = 162/299 (54.18%), Query Frame = 1
Query: 1 YDCDTYWPV---HCLSDDREETLKEASGVARGATIAVLDLG--GSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLG--DDVT---GCSISSPAIGKNCLAVGSSMSGAIR-----------------------------LSP----PSGDM-----DDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQG--SCELQLNSGTSMSCPLTAGAAALVRQYFVD-GFHSADAEARGLCSASEKTTAASDGVEFACEAFVPTGALIK 744
Y+CD + CLSDD E L + GVA GA I++LD GS+ G +W +A TGA++HS SWG+ D C++ + +D++ YENPEHLLIFAAGN G +D+ GC+I SPA+GKN LAVG++ SG R LSP PS M D V+ FSS GPT DGRIKPDVVAPG V SA++ G SC L N GTS SCPL AGAAALVRQYF D F + D +RG C+ ++ C F P+ A +K
Sbjct: 528 YNCDGNTDIPSSECLSDDPVENLHQHGGVAPGAQISMLDASYTGSDSFALFAGNMLWYSAMETGAKIHSNSWGY-DMLCQLTENEYLYDSFMYENPEHLLIFAAGNHGGNEDIPNHEGCTIGSPALGKNILAVGATSSGPSRGTRTGEDGNLVYEEFGMTDYSPEGYPWICLSPSLGTPSASMEPAGVDTVAFFSSQGPTLDGRIKPDVVAPGDQVASASSDGTDGHSCRLLANMGTSASCPLVAGAAALVRQYFKDPSFFAKDVTSRGGCAEHSSSSQ--------CSEFAPSAATVK 817
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Match: A0A6H5JQT4_9PHAE (Subtilisin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT4_9PHAE) HSP 1 Score: 182 bits (463), Expect = 6.030e-49 Identity = 117/256 (45.70%), Postives = 153/256 (59.77%), Query Frame = 1
Query: 1 YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLD-LGGSEGLHQVLGGHMWEAAAGTGARLHSGSWGFPDDPCEVDDASVSFDAWAYENPEHLLIFAAGNLGDDVTG-CSISSPAIGKNCLAVGSSMSGAIRLSPPSG-DMDDVSDFSSVGPTTDGRIKPDVVAPGHYVFSAANGGQ---GSCELQLNSGTSMSCPLTAGAAALVRQYFV-DGFHSADAEARGLCSASEKTTAASDGVEFA-CEAFVPTGALIK 744
YDCD CLSDD ETL G+A+GA +A+ D + GL +G +WE A ++HS S+G D C + V +D W NPE+LLIFAAGN G+ C++SSPAI KN LAVG+S SG RLS G +D V+ FSS GPT+D RIKP+V+APG ++SAA+ G SC L +GTSMS P+ AGA+A++RQYF+ + F + D ARG C E+A CEAF P+ A +K
Sbjct: 565 YDCDVLETEKCLSDDVAETLTNNGGMAQGAKLAIFDAFYDNFGLSPFVGNGLWEPCAEADCKIHSNSYG-GDFECSLGPNDVLYDGWMVSNPENLLIFAAGNDGERRRSTCTMSSPAIAKNVLAVGASTSGDTRLSATPGLGIDTVAVFSSYGPTSDSRIKPEVLAPGDAIYSAASDGSMDSHSCRLWAYAGTSMSTPIVAGASAMIRQYFMNETFFATDMTARGFCD------------EWAGCEAFSPSSATLK 807 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21293.5587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21293.5587.1 >prot_H-paniculata_contig21293.5587.1 ID=prot_H-paniculata_contig21293.5587.1|Name=mRNA_H-paniculata_contig21293.5587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=253bp YDCDTYWPVHCLSDDREETLKEASGVARGATIAVLDLGGSEGLHQVLGGHback to top mRNA from alignment at H-paniculata_contig21293:214..2516- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21293.5587.1 ID=mRNA_H-paniculata_contig21293.5587.1|Name=mRNA_H-paniculata_contig21293.5587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2303bp|location=Sequence derived from alignment at H-paniculata_contig21293:214..2516- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21293:214..2516- >mRNA_H-paniculata_contig21293.5587.1 ID=mRNA_H-paniculata_contig21293.5587.1|Name=mRNA_H-paniculata_contig21293.5587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig21293:214..2516- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |