mRNA_H-paniculata_contig21285.5584.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21285.5584.1
Unique NamemRNA_H-paniculata_contig21285.5584.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21285.5584.1 vs. uniprot
Match: D7G2L9_ECTSI (Peptidase S16 lon domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L9_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 5.430e-63
Identity = 134/281 (47.69%), Postives = 170/281 (60.50%), Query Frame = 1 
Query:    1 RAPRIVTVLGLGFEG-----------RVQVAPALANYGTFPDLGGGGETVRKVFSLPEEQQAHFLVLSKKSA---AFGLERSLERIANLLPGGTRLAAVSSGGHSSVVSSFPAGESPLVGVCLWGDISVKEQAELACKTLGAFGLGGVRVAGNAADELFVPRTPLLTQAQEGQQHSSLDHELINLVQPPPRSASSWSPVSGTSDTSRAALASQLCVFKVDDFVFPGMRRRFYIFEPRYRALVKRCLRDGQPMLLLPSVSAGNAVGTAAWVTGLYNVQEDGR 801
            R+P+IVTVLGLGF G           RV+  P  A  G FP++ G    VR +F LP+E+Q  F +LSK      A  L+ + +R+ NLLP  TRL A+SSG  SSVVSSFPAG++P+VGVCL GDI ++EQA LA KTLGAFG   +  +G   DELFVP  P    A    + SS+  + +  VQ   R+    S               QL VFKVD+ VFPGM +RF IFEPRYRALVK+CL + +P+ +LP    GN V T A V+GL+NV+ DGR
Sbjct:  162 RSPKIVTVLGLGFHGEELAGGGGGRGRVEALPVYAEGGCFPNILGKDSVVR-IFELPKEKQPLFFMLSKDDQSVPASDLQDTNQRLGNLLPNSTRLCALSSGNPSSVVSSFPAGDAPMVGVCLTGDIPLQEQAGLARKTLGAFGFNAISASGAVCDELFVPSQP--RAAWLDPRPSSIKMDTLERVQEQVRALEQQS--RXXXXXXXXXXXXQLGVFKVDEVVFPGMTKRFRIFEPRYRALVKQCLAEDEPLAILPLSRGGNTVATTARVSGLHNVEADGR 437
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BLAST of mRNA_H-paniculata_contig21285.5584.1 vs. uniprot
Match: A0A6H5JQN4_9PHAE (Lon N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN4_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.380e-19
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:  595 QLCVFKVDDFVFPGMRRRFYIFEPRYRALVKRCLRDGQPMLLLPSVSAGNAVGTAAWVTGLYNVQEDGR 801
            QL VFKVD+ VFPGM +RF IFEPRYRALVK+CL + +P+ +LP    GN V T A V+GLYNV+ DGR
Sbjct:   34 QLGVFKVDEVVFPGMTKRFRIFEPRYRALVKQCLAEDEPLAILPLSRGGNTVATTARVSGLYNVEADGR 102
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21285.5584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2L9_ECTSI5.430e-6347.69Peptidase S16 lon domain protein n=1 Tax=Ectocarpu... [more]
A0A6H5JQN4_9PHAE6.380e-1963.77Lon N-terminal domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21285contigH-paniculata_contig21285:1773..3837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size825
Cds size825
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21285.5584.1prot_H-paniculata_contig21285.5584.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21285 1773..3837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.7685144-CDS-H-paniculata_contig21285:1772..20201622929569.7685144-CDS-H-paniculata_contig21285:1772..2020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 1773..2020 -
1691480918.0042815-CDS-H-paniculata_contig21285:1772..20201691480918.0042815-CDS-H-paniculata_contig21285:1772..2020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 1773..2020 -
1622929569.7799802-CDS-H-paniculata_contig21285:2122..23691622929569.7799802-CDS-H-paniculata_contig21285:2122..2369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 2123..2369 -
1691480918.0148144-CDS-H-paniculata_contig21285:2122..23691691480918.0148144-CDS-H-paniculata_contig21285:2122..2369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 2123..2369 -
1622929569.794021-CDS-H-paniculata_contig21285:3065..31531622929569.794021-CDS-H-paniculata_contig21285:3065..3153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 3066..3153 -
1691480918.024524-CDS-H-paniculata_contig21285:3065..31531691480918.024524-CDS-H-paniculata_contig21285:3065..3153Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 3066..3153 -
1622929569.8125675-CDS-H-paniculata_contig21285:3595..38371622929569.8125675-CDS-H-paniculata_contig21285:3595..3837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 3596..3837 -
1691480918.034702-CDS-H-paniculata_contig21285:3595..38371691480918.034702-CDS-H-paniculata_contig21285:3595..3837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21285 3596..3837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21285.5584.1

>prot_H-paniculata_contig21285.5584.1 ID=prot_H-paniculata_contig21285.5584.1|Name=mRNA_H-paniculata_contig21285.5584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=275bp
RAPRIVTVLGLGFEGRVQVAPALANYGTFPDLGGGGETVRKVFSLPEEQQ
AHFLVLSKKSAAFGLERSLERIANLLPGGTRLAAVSSGGHSSVVSSFPAG
ESPLVGVCLWGDISVKEQAELACKTLGAFGLGGVRVAGNAADELFVPRTP
LLTQAQEGQQHSSLDHELINLVQPPPRSASSWSPVSGTSDTSRAALASQL
CVFKVDDFVFPGMRRRFYIFEPRYRALVKRCLRDGQPMLLLPSVSAGNAV
GTAAWVTGLYNVQEDGRYVLVQCI*
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mRNA from alignment at H-paniculata_contig21285:1773..3837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21285.5584.1 ID=mRNA_H-paniculata_contig21285.5584.1|Name=mRNA_H-paniculata_contig21285.5584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2065bp|location=Sequence derived from alignment at H-paniculata_contig21285:1773..3837- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTCCACGAATCGTAACCGTACTAGGTCTTGGATTCGAGGGGCGCGT
CCAGGTCGCCCCGGCGCTCGCGAACTATGGCACCTTTCCGGACCTGGGGG
GAGGGGGCGAGACTGTGCGAAAGGTTTTCTCACTGCCCGAGGAGCAGCAG
GCTCATTTTTTGGTTCTGTCCAAAAAGAGCGCGGCGTTCGGGCTGGAACG
TTCCTTGGAACGGATCGCGAATCTGCTGCCCGGAGGCACGAGGTATAGTA
GTGGTGGTGATGCATGGATAATAATGAACGGATGGTGTGGCTATTGTGTG
TACACACACGAGAGAGCGGGGGTGGTGGTTGGTCTTGGGGTAGGGCGCGT
TTAATGTCAAAGCTGAAGATAGACCGTCTCAATCTGTAGTCGTTTTTGCT
TTTTTCAAAGGTGTCATTCTCTCGTTCAAAACACGATGACGGCAAGGTAT
CTTTTGGGAAAGCAACATAGAAAAAACACTTTTGTAAAAACAGGGAATGT
ATATTTATATATACATATAAATATATATACATATATATATATATATATAT
ATATATATATATATCTTGAGGTGTATTGCCATGATTAAAAACTAATATCG
CAACTGTTTGTTTTCTCAATATATCGTGCACTTGTTTGTGTTCTGTATGT
CATCGTTTTATTTTTTTATTTTTTTATTCATCAGACTTGCCGCCGTAAGC
TCCGGCGGACATAGTTCCGTTGTTTCCAGTTTCCCTGCTGGAGAGTCCCC
ATTGGTAGGGGTCTGCCTCTGGGTGAGCGGCGGAAGTAAGAAGGGTTGGA
CGTACACGTACATAGTCTCTCCTTTTCCCCCATCGTCAGTCCTAAAGAAA
CAAAACCGGGTAAAAGCAAATATATACGTGCCGATTTATGTAATTATATA
TATATATATATATATATATATATCGCAATCGTGTGTTGTTTGAATAATGC
CGATTGATGCATAGAAACATCTGGAAAATGAGGCTGAGGAGATGTGGATC
TTGAATATTGTTTCATCTCGAGAGAGATGCTTGGACCGATAGTCAGTTGG
GTTTGTACCGGTATTTATGCGAGAGGGCGGGGGGTAGTGTTGAAAGCTCT
GTGATTTGTTGCTCTGTTGTTTTTTCCCGTTAGGATATGGGTTGTTATGT
GGATTTTAGTGCGGTGTAAATGTGAAGTGCGTGTGTGTATGTATAACAGT
CAACATGTGTACAGGGGTATAAGAGAGCGTAGGTAAAGTGTCTTGACAAT
ATATATATGTGTGTGTGTGTGTATTGGATGTATTTTTATGCATTGGGATG
TTTCATTTTTTTTTTTTTTTTTCAGTAGTATGGAGAACTTTGGAACATAT
TTTTGGTTCTATTTCGCGTCTGCTTGAATGAATAAAAACGATTGCCCTTT
CCCCCCCCCCCTTCTTCCTTCGTCCCCCTTAAAAAAAAAAATGTCATTTC
GCCCACCACGTATCAAAGGGTGACATCTCCGTCAAGGAGCAAGCGGAGTT
GGCGTGCAAGACTCTGGGAGCGTTCGGGTTGGGCGGCGTGCGGGTGGCGG
GCAATGCGGCCGATGAGCTCTTCGTGCCTCGTACCCCACTGCTGACTCAG
GCACAAGAAGGACAGCAACACTCATCTCTGGATCATGAACTGATAAACCT
TGTGCAGCCACCACCTCGATCAGCATCTTCATGGAGCCCCGTCTCCGGCA
CCTCTGACACATCTAGTAGTAATAGTATTAGTAATGGTACAAGTGATAGT
AGCAATAGTAGTAGCAGTAGTAATGCTGGTTGTACGGGATCGGTGGGAGG
TGGTCATTCTCCAGAAGGGGCGGCGCTGGCATCGCAGCTGTGCGTGTTCA
AGGTGGACGACTTCGTGTTTCCCGGGATGCGAAGGAGATTCTACATATTC
GAGCCGCGGTACCGTGCGCTCGTGAAGCGGTGTTTGAGGGATGGACAGCC
GATGCTGCTGCTGCCAAGCGTGTCGGCGGGAAACGCGGTTGGCACTGCGG
CGTGGGTGACGGGACTGTACAACGTCCAGGAGGACGGCAGGTACGTACTA
GTACAGTGCATATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21285:1773..3837-

>mRNA_H-paniculata_contig21285.5584.1 ID=mRNA_H-paniculata_contig21285.5584.1|Name=mRNA_H-paniculata_contig21285.5584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at H-paniculata_contig21285:1773..3837- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCTCCACGAATCGTAACCGTACTAGGTCTTGGATTCGAGGGGCGCGT
CCAGGTCGCCCCGGCGCTCGCGAACTATGGCACCTTTCCGGACCTGGGGG
GAGGGGGCGAGACTGTGCGAAAGGTTTTCTCACTGCCCGAGGAGCAGCAG
GCTCATTTTTTGGTTCTGTCCAAAAAGAGCGCGGCGTTCGGGCTGGAACG
TTCCTTGGAACGGATCGCGAATCTGCTGCCCGGAGGCACGAGAGGGCTCC
ACGAATCGTAACCGTACTAGGTCTTGGATTCGAGGGGCGCGTCCAGGTCG
CCCCGGCGCTCGCGAACTATGGCACCTTTCCGGACCTGGGGGGAGGGGGC
GAGACTGTGCGAAAGGTTTTCTCACTGCCCGAGGAGCAGCAGGCTCATTT
TTTGGTTCTGTCCAAAAAGAGCGCGGCGTTCGGGCTGGAACGTTCCTTGG
AACGGATCGCGAATCTGCTGCCCGGAGGCACGAGACTTGCCGCCGTAAGC
TCCGGCGGACATAGTTCCGTTGTTTCCAGTTTCCCTGCTGGAGAGTCCCC
ATTGGTAGGGGTCTGCCTCTGGACTTGCCGCCGTAAGCTCCGGCGGACAT
AGTTCCGTTGTTTCCAGTTTCCCTGCTGGAGAGTCCCCATTGGTAGGGGT
CTGCCTCTGGGGTGACATCTCCGTCAAGGAGCAAGCGGAGTTGGCGTGCA
AGACTCTGGGAGCGTTCGGGTTGGGCGGCGTGCGGGTGGCGGGCAATGCG
GCCGATGAGCTCTTCGTGCCTCGTACCCCACTGCTGACTCAGGCACAAGA
AGGACAGCAACACTCATCTCTGGATCATGAACTGATAAACCTTGTGCAGC
CACCACCTCGATCAGCATCTTCATGGAGCCCCGTCTCCGGCACCTCTGAC
ACATCTAGGTGACATCTCCGTCAAGGAGCAAGCGGAGTTGGCGTGCAAGA
CTCTGGGAGCGTTCGGGTTGGGCGGCGTGCGGGTGGCGGGCAATGCGGCC
GATGAGCTCTTCGTGCCTCGTACCCCACTGCTGACTCAGGCACAAGAAGG
ACAGCAACACTCATCTCTGGATCATGAACTGATAAACCTTGTGCAGCCAC
CACCTCGATCAGCATCTTCATGGAGCCCCGTCTCCGGCACCTCTGACACA
TCTAGGGCGGCGCTGGCATCGCAGCTGTGCGTGTTCAAGGTGGACGACTT
CGTGTTTCCCGGGATGCGAAGGAGATTCTACATATTCGAGCCGCGGTACC
GTGCGCTCGTGAAGCGGTGTTTGAGGGATGGACAGCCGATGCTGCTGCTG
CCAAGCGTGTCGGCGGGAAACGCGGTTGGCACTGCGGCGTGGGTGACGGG
ACTGTACAACGTCCAGGAGGACGGCAGGTACGTACTAGTACAGTGCATAT
AGGGGCGGCGCTGGCATCGCAGCTGTGCGTGTTCAAGGTGGACGACTTCG
TGTTTCCCGGGATGCGAAGGAGATTCTACATATTCGAGCCGCGGTACCGT
GCGCTCGTGAAGCGGTGTTTGAGGGATGGACAGCCGATGCTGCTGCTGCC
AAGCGTGTCGGCGGGAAACGCGGTTGGCACTGCGGCGTGGGTGACGGGAC
TGTACAACGTCCAGGAGGACGGCAGGTACGTACTAGTACAGTGCATATAG
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