mRNA_H-paniculata_contig2128.5581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: D7FGX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX5_ECTSI) HSP 1 Score: 225 bits (573), Expect = 4.990e-67 Identity = 100/149 (67.11%), Postives = 120/149 (80.54%), Query Frame = 1
Query: 193 ADDPHPLRMKDWELEMRVTPWKKQVQQVKFDRNGTVWTSEGNTGEWWFDVGGLYWDVNATSGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVGAGVGDDTSDTSYRHRQTTGNVETAPIRVPQQTDRY 639
+ + HPLR +DW L++R +PW ++ Q+V F RNGT+ +++GN GEWWFDVGGLYWDVN T A TVLHHKAELHWNVFGS+PRMFRGT+TRDR S LPPWLFRPVV SF+G+GVGDDT+DTSYRHRQT G E A P++TDRY
Sbjct: 61 SQESHPLRTQDWTLQIRSSPWTRREQEVTFHRNGTMSSNDGNKGEWWFDVGGLYWDVNTTIRAAPTVLHHKAELHWNVFGSQPRMFRGTITRDRLPNSPLPPWLFRPVVGSFIGSGVGDDTADTSYRHRQT-GTSEQAGAPPPRRTDRY 208
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: A0A835YRW5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRW5_9STRA) HSP 1 Score: 163 bits (413), Expect = 1.520e-44 Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 1
Query: 184 KQTADDPHPLRMKDWELEMR-VTPWKKQVQQVKFDRNGTVWTSEGNTGEWWFDVGGLYWDVNATSGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVGAGVGDDTSDTSYRHRQTTGNV 597
++ D PHPLR +W + R + +K++ + F ++GTV + G WWFDVGGL+W++ S +T H++AELHWN+FG++PRMFRGTVTRDR+ SF+PPWL RPV+S+F G G+GDDT+DT+Y+HRQ+ V
Sbjct: 2 EEDEDAPHPLRTAEWRMSTRKLLGFKREDEYFTFHKDGTVESPGKADGRWWFDVGGLHWELKEPS---ATATHYRAELHWNIFGTQPRMFRGTVTRDRSPSSFMPPWLLRPVISTFTGYGIGDDTADTTYKHRQSESFV 137
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: A0A7S1BFC3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFC3_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.140e-30 Identity = 66/142 (46.48%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 181 GKQTADD---PHPLRMKDWELEMRVTPWKKQVQ-QVKFDRNGTVWTSEGN--TGEWWFDVGGLYWDVNAT---SGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVGAGVGDDTSDTSYRHR 579
GK+ DD HPLRM W++ +R+ + Q F+R+G V +G+ TGEWWFD GG+ WD++ T + A T H+ A++H N FG PRM++G VTRDR SFLPP LFRPV+++F GVG DT DT+Y++R
Sbjct: 131 GKEFEDDFTEEHPLRMALWKVNLRLGMARSADSIQFYFNRSGKVSMHDGSGVTGEWWFDQGGISWDMDITDVDNNAKKTTYHYHADIHMNKFGERPRMYKGVVTRDRYKNSFLPPSLFRPVIATFSAQGVGKDTRDTTYKNR 272
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: A0A0G4EMR7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMR7_VITBC) HSP 1 Score: 119 bits (298), Expect = 1.230e-27 Identity = 61/135 (45.19%), Postives = 91/135 (67.41%), Query Frame = 1
Query: 184 KQT-ADD-PHPLRMKDWELEMRVTPWKKQVQ-QVKFDRNGTVWTSEGNTGEWWFDVGGLYWDVNATSGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVGAGVGDDTSDTSYRHR 579
KQT ADD PHPLRM++W+L +R ++++ + ++ F R+G++ TS+G+ GEW D G+ W+ + T + AE+HWNVFGS+PRM++G +TRDR + + LFRPV+ +F G G G DT+D SYR R
Sbjct: 52 KQTEADDSPHPLRMEEWKLRVRRGLFRRRSEMRINFRRDGSLQTSDGHKGEWRLDKFGVMWEFLVDN----TTHRYMAEVHWNVFGSQPRMYKGVITRDRRAP--IRADLFRPVIGTFTGIGCGTDTADVSYRDR 180
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: A0A7S2V1B7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1B7_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.320e-22 Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 208 PLRMKDWELEMRVTPWKKQVQQVKF------DRNGTVWTSEGNTGEWWFDVGGLYWDVNATSGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVGAGVGDDT 555
PLRM+ WE+ R +++ ++F D G + T EG TG+W + GL W + A + + A +H N FG+ P+MFRG V RDR + SFLPPWLFRPVV++F G GVG+DT
Sbjct: 78 PLRMEKWEIIFRTGLSERKQSSIQFYHTGGEDDKGDLRTDEGETGDWAMEKLGLQWQIRRNGVAYT----YYALVHHNTFGAAPKMFRGVVVRDRFASSFLPPWLFRPVVATFHGHGVGEDT 195
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Match: A0A0Y9ZRL9_PLABE (Uncharacterized protein n=2 Tax=Plasmodium berghei TaxID=5821 RepID=A0A0Y9ZRL9_PLABE) HSP 1 Score: 58.9 bits (141), Expect = 3.530e-6 Identity = 33/111 (29.73%), Postives = 55/111 (49.55%), Query Frame = 1
Query: 205 HPLRMKDWELEMRVTPW-KKQVQQVKFDRNGTVWTSEGNTGEWWFDVGGLYWDVNATSGATSTVLHHKAELHWNVFGSEPRMFRGTVTRDRTSKSFLPPWLFRPVVSSFVG 534
HPL+ W++ + KK+ + NGTV TS+G TG W++D + W + ++H +EL WN E +M +G + + F P ++FR ++ SF G
Sbjct: 114 HPLKNTLWKINTYNCLFQKKKTFYIYIYENGTVKTSDGLTGYWFYDKYHITWCIEYPD----RKVYHTSELVWN--NEESKMMKGIIYEEMKKTRFFPSYMFRKILCSFDG 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2128.5581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2128.5581.1 >prot_H-paniculata_contig2128.5581.1 ID=prot_H-paniculata_contig2128.5581.1|Name=mRNA_H-paniculata_contig2128.5581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp MLGNVVSKYTKSAKVDTLGRLKHTELLGEMENWEDGGKQTADDPHPLRMKback to top mRNA from alignment at H-paniculata_contig2128:7096..12236- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2128.5581.1 ID=mRNA_H-paniculata_contig2128.5581.1|Name=mRNA_H-paniculata_contig2128.5581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5141bp|location=Sequence derived from alignment at H-paniculata_contig2128:7096..12236- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2128:7096..12236- >mRNA_H-paniculata_contig2128.5581.1 ID=mRNA_H-paniculata_contig2128.5581.1|Name=mRNA_H-paniculata_contig2128.5581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig2128:7096..12236- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |