mRNA_H-paniculata_contig2128.5580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2128.5580.1
Unique NamemRNA_H-paniculata_contig2128.5580.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: K3WYT4_GLOUD (ADP-ribosylation factor n=30 Tax=Stramenopiles TaxID=33634 RepID=K3WYT4_GLOUD)

HSP 1 Score: 358 bits (920), Expect = 1.960e-115
Identity = 173/181 (95.58%), Postives = 181/181 (100.00%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            MG+AFSR+++R+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+SILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQW+IQACCATTGDGLYEGLDWLSATLQK+K
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKKK 181
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: A0A0P1B1D9_PLAHL (Adp-ribosylation factor n=17 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1B1D9_PLAHL)

HSP 1 Score: 358 bits (919), Expect = 6.010e-115
Identity = 173/183 (94.54%), Postives = 182/183 (99.45%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKRK*R 1494
            MG+AFSR+++R+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+S+LLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQW+IQACCATTGDGLYEGLDWLSATLQK+K R
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKQKSR 183
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: M4BN95_HYAAE (ADP-ribosylation factor n=8 Tax=Oomycota TaxID=4762 RepID=M4BN95_HYAAE)

HSP 1 Score: 357 bits (915), Expect = 1.080e-114
Identity = 171/181 (94.48%), Postives = 181/181 (100.00%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            MG+AFSR+++R+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+S+LLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQW+IQACCATTGDGLYEGLDWLSATLQK++
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSVLLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGDGLYEGLDWLSATLQKKQ 181
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: A0A7S2W572_9STRA (ADP-ribosylation factor n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W572_9STRA)

HSP 1 Score: 351 bits (900), Expect = 3.050e-112
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            MGL FSR+WDRMFG++EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEY+NISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDR+DAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMT+KLGLH LR R WYIQACCATTGDGLYEGLDWLSATL K K
Sbjct:   15 MGLTFSRIWDRMFGRREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRIDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTEKLGLHNLRGRSWYIQACCATTGDGLYEGLDWLSATLTKNK 195
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: B8BS84_THAPS (ADP-ribosylation factor n=39 Tax=Eukaryota TaxID=2759 RepID=B8BS84_THAPS)

HSP 1 Score: 348 bits (892), Expect = 2.950e-111
Identity = 170/183 (92.90%), Postives = 178/183 (97.27%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLR--HRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            MGL FSRL++RMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSND DR+DAARDE+HRMLNEDELR+++LLVFANKQDLPNAMSAAEMTDKLGLHGLR  +RQWYIQACCATTGDGLYEGLDWLSATL KRK
Sbjct:    1 MGLTFSRLFERMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDSDRIDAARDEMHRMLNEDELRDAVLLVFANKQDLPNAMSAAEMTDKLGLHGLRPSYRQWYIQACCATTGDGLYEGLDWLSATLVKRK 183
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: A0A7S1TNC0_9STRA (ADP-ribosylation factor n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNC0_9STRA)

HSP 1 Score: 337 bits (864), Expect = 3.910e-107
Identity = 161/180 (89.44%), Postives = 170/180 (94.44%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKR 1485
            MGL+FS +W R  G +EMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQG+IFVVDSNDRDRVDAARDELHRM+ EDELRE+ LLVFANKQDLPNAM+AAE+T KLGLH +RHRQWYIQACCATTGDGLYEGLDWLSATL KR
Sbjct:    1 MGLSFSAIWARFMGNREMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVDAARDELHRMMGEDELREATLLVFANKQDLPNAMNAAELTQKLGLHDMRHRQWYIQACCATTGDGLYEGLDWLSATLNKR 180
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: A0A7S0J417_9EUKA (ADP-ribosylation factor n=2 Tax=Prymnesiophyceae TaxID=2608131 RepID=A0A7S0J417_9EUKA)

HSP 1 Score: 330 bits (845), Expect = 4.340e-104
Identity = 158/183 (86.34%), Postives = 171/183 (93.44%), Query Frame = 1 
Query:  940 GTMGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            GTMGL FS+++ ++FGKK++RILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQG+IFVVDSNDRDRV  ARDELHRMLNEDELRE+ILLVFANKQDLPNAM+AAE+TDKLGLH LR R WYIQ+ CATTGDGLYEGLDWLS  L K K
Sbjct:   16 GTMGLTFSKVFGKLFGKKDVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGVIFVVDSNDRDRVGEARDELHRMLNEDELREAILLVFANKQDLPNAMNAAEITDKLGLHSLRQRNWYIQSTCATTGDGLYEGLDWLSTALSKAK 198
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: K0RB38_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB38_THAOC)

HSP 1 Score: 330 bits (846), Expect = 4.190e-103
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 1 
Query:  982 FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLR--HRQWYIQACCATTGDGLYEGLDWLSATLQKRK 1488
            FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSND DR+DAARDE+HRMLNEDELR+++LLVFANKQDLPNAMSAAEMTDKLGLHGLR  +RQWYIQACCATTGDGLYEGLDWLSATL KRK
Sbjct:  103 FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDSDRIDAARDEMHRMLNEDELRDAVLLVFANKQDLPNAMSAAEMTDKLGLHGLRPSYRQWYIQACCATTGDGLYEGLDWLSATLVKRK 273
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: B9FW81_ORYSJ (Uncharacterized protein n=4 Tax=Poaceae TaxID=4479 RepID=B9FW81_ORYSJ)

HSP 1 Score: 327 bits (839), Expect = 1.490e-102
Identity = 156/184 (84.78%), Postives = 171/184 (92.93%), Query Frame = 1 
Query:  934 EGGTMGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGDGLYEGLDWLSATLQKR 1485
            EGG MGLAF +L+ R+F KKEMRILMVGLDAAGKTTILYKLKLGE+VTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY+QNTQGLIFVVDSNDRDRV  ARDELHRMLNEDELR+++LLVFANKQDLPNAM+AAE+TDKLGLH LR R WYIQ+ CATTG+GLYEGLDWLS+ +  +
Sbjct:   57 EGGKMGLAFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIASK 240
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BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Match: A0A5D6YTC8_9STRA (ADP-ribosylation factor n=3 Tax=Stramenopiles TaxID=33634 RepID=A0A5D6YTC8_9STRA)

HSP 1 Score: 324 bits (830), Expect = 2.300e-102
Identity = 157/164 (95.73%), Postives = 164/164 (100.00%), Query Frame = 1 
Query:  946 MGLAFSRLWDRMFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTGD 1437
            MG+AFSR+++R+FGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELR+SILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQW+IQACCATTGD
Sbjct:    1 MGMAFSRVFERLFGKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNEDELRDSILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWFIQACCATTGD 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2128.5580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K3WYT4_GLOUD1.960e-11595.58ADP-ribosylation factor n=30 Tax=Stramenopiles Tax... [more]
A0A0P1B1D9_PLAHL6.010e-11594.54Adp-ribosylation factor n=17 Tax=Peronosporaceae T... [more]
M4BN95_HYAAE1.080e-11494.48ADP-ribosylation factor n=8 Tax=Oomycota TaxID=476... [more]
A0A7S2W572_9STRA3.050e-11293.37ADP-ribosylation factor n=2 Tax=Rhizochromulina ma... [more]
B8BS84_THAPS2.950e-11192.90ADP-ribosylation factor n=39 Tax=Eukaryota TaxID=2... [more]
A0A7S1TNC0_9STRA3.910e-10789.44ADP-ribosylation factor n=2 Tax=Phaeomonas parva T... [more]
A0A7S0J417_9EUKA4.340e-10486.34ADP-ribosylation factor n=2 Tax=Prymnesiophyceae T... [more]
K0RB38_THAOC4.190e-10394.15Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
B9FW81_ORYSJ1.490e-10284.78Uncharacterized protein n=4 Tax=Poaceae TaxID=4479... [more]
A0A5D6YTC8_9STRA2.300e-10295.73ADP-ribosylation factor n=3 Tax=Stramenopiles TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2128contigH-paniculata_contig2128:212..5242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.0
Seed ortholog evalue1.5e-99
Seed eggNOG ortholog2880.D7FGX4
Preferred nameArf1
KEGG koko:K07937,ko:K07977
KEGG Pathwayko04072,ko04144,ko05110,ko05134,map04072,map04144,map05110,map05134
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0070@2759
Ec32 ortholog descriptionArf1, ARF family GTPase
Ec32 orthologEc-11_000980.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons4
Model size2679
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2128.5580.1prot_H-paniculata_contig2128.5580.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2128 1400..4408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.1890845-UTR-H-paniculata_contig2128:211..13991622929569.1890845-UTR-H-paniculata_contig2128:211..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2128 212..1399 -
1691480917.7331357-UTR-H-paniculata_contig2128:211..13991691480917.7331357-UTR-H-paniculata_contig2128:211..1399Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2128 212..1399 -
1622929569.3298662-UTR-H-paniculata_contig2128:4408..52421622929569.3298662-UTR-H-paniculata_contig2128:4408..5242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2128 4409..5242 -
1691480917.7835295-UTR-H-paniculata_contig2128:4408..52421691480917.7835295-UTR-H-paniculata_contig2128:4408..5242Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2128 4409..5242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.2045832-CDS-H-paniculata_contig2128:1399..15611622929569.2045832-CDS-H-paniculata_contig2128:1399..1561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 1400..1561 -
1691480917.7456577-CDS-H-paniculata_contig2128:1399..15611691480917.7456577-CDS-H-paniculata_contig2128:1399..1561Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 1400..1561 -
1622929569.2227938-CDS-H-paniculata_contig2128:2053..22441622929569.2227938-CDS-H-paniculata_contig2128:2053..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 2054..2244 -
1691480917.7552464-CDS-H-paniculata_contig2128:2053..22441691480917.7552464-CDS-H-paniculata_contig2128:2053..2244Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 2054..2244 -
1622929569.2398112-CDS-H-paniculata_contig2128:3255..33821622929569.2398112-CDS-H-paniculata_contig2128:3255..3382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 3256..3382 -
1691480917.7639575-CDS-H-paniculata_contig2128:3255..33821691480917.7639575-CDS-H-paniculata_contig2128:3255..3382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 3256..3382 -
1622929569.2963448-CDS-H-paniculata_contig2128:4231..44081622929569.2963448-CDS-H-paniculata_contig2128:4231..4408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 4232..4408 -
1691480917.7732613-CDS-H-paniculata_contig2128:4231..44081691480917.7732613-CDS-H-paniculata_contig2128:4231..4408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2128 4232..4408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2128.5580.1

>prot_H-paniculata_contig2128.5580.1 ID=prot_H-paniculata_contig2128.5580.1|Name=mRNA_H-paniculata_contig2128.5580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MPFLVSILCGLILITLFASCLIACAVFLLLWCFEGGTMGLAFSRLWDRMF
GKKEMRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNISF
TVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSNDRDRVDAARDELHRMLNE
DELRESILLVFANKQDLPNAMSAAEMTDKLGLHGLRHRQWYIQACCATTG
DGLYEGLDWLSATLQKRK*
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mRNA from alignment at H-paniculata_contig2128:212..5242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2128.5580.1 ID=mRNA_H-paniculata_contig2128.5580.1|Name=mRNA_H-paniculata_contig2128.5580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5031bp|location=Sequence derived from alignment at H-paniculata_contig2128:212..5242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACAGGCACACTTGTCTGTGACGCACATAGGGGGGTTCATATCTGTGTC
TGGCGGGGGCAAGGTGAGGAGATGGGTCGATTTTGGAATGTGTTCTCGTT
CGTAAGAACCCTGAATTTTCGACCTCTCTTTTCTTTGAGGTGTCGTAATT
TTTGGCTGAGGGGGATGAGGGAATGCAGGTAAAAGGATGTGATGTGTTCG
GAAAACACCGCGCTCACTGTCCACGAACCGAGGAATCAAAGGCCTAGAAT
GTTGTTTGTGATTTGTCGTGTGGCCAGTGTTTCCCGTTACTCCTCTGTTC
ACACAGTGTGGTGCACCGTGATTTTTCACCATTATTCTACGGCTAGAGCC
ACTATCCATGTTTTTCTGTGGACCCTCTGCTGCTGCCGCGCCGAAGGCAG
CGTGGCATATTTGGCGATCTTCGGAATATTGAGCGGAGCATCAAGGTAAA
GGAGAGCAGGCATTGCGTAGAGCCTGTGAATCGCGGGGCATGCGGCAGGG
AACTGTGGATGGGAGCACAGGGACTGGTCGGGACGTGTCTTCTGCCTGTT
TTCGCCGCATTGAGGACAAAAGTGCCGACAGAAATATATACCGCCGTCAG
CGTGTGTCTTTTTTTGTGCAGAAATATACGACCGTGATGATGGTAGCGTG
TCCGAAAGGGGACTCAAACCCGTGATTTCCCTAGCAAGCTGTTCGACCTC
TGGGTGTCTGGTGTCTATCGTGCAGAGGGAACTTGGACCGCATACACCCG
CCGCACCCCTTTTTATTTTTTACTTGTGTCCGTTTTTTTGTGAGGTCTGA
GTTTGGTTATTTTTTCGGTCAGACCTTGACACACATGCCATTTCTGGTTT
CCATCTTGTGCGGTCTCATTCTCATCACATTATTCGCCTCCTGCTTGATC
GCCTGCGCTGTCTTTTTACTTCTCTGGTGCTTCGAAGGCGGAACTATGGG
GCTCGCTTTCTCTCGACTGTGGGACCGTATGTTCGGGAAGAAGGAGATGC
GTATTCTGATGGTAAGTGTCGTGAACGTCATTATGCATGTGTGTGGCATA
TGTCGAGAGACGTTCTTGAATATTTTTACCTGGCCGTACATACTCTCATG
ACTGAGTCGCGCTCTCCCACCCAAAAAAACGACAACTTGATTGAGACAAG
CATTTCACAATTGCCTGGTCTAGTGATGGTGTCTACCAAGACAACCCAAA
CATTCCTTTTTTGTTGTTGGAGAGTGTTGCGTGGACGGGCATGTGTGCAA
CTCTTTTTTGCTTTCTTGTTCATTCGTGAGCCGCATCTATTTGATGACCC
CCTCTTCTCTGCACTTTTTAACAACTGCATTTGTATAGGCAGCATCTTGT
AACGTGATGGCGCCCCGGTGGTGGGGAGTAGAATTTTATATTGGCGCTGA
CGGGATGATTTTTCGTGTACACTCAACCTGATTACCAAAAAGATGGATGA
CTAGGCGTTGACTGACGACGTGTTTCCTGCACAAATCCGGCGTTTTTCAG
TCAACAGTCTTTCGGAACTTCGCCTTGGTTGATGGGTGTCACTCCGCTCT
GTTCACGAGCCGTAATGAAAACCTCACCAGGGTCTTGACATGTAGGATAG
ACGGCAATTTTGAGTGGATGAAAACTAAATATCTACATCGCGGCCTTTCT
ATCACATGTACTCTTTTTGGTGTGAAATTGGACACTCGGCTGTTCTGTCG
ACTGGTGACGTTTTTCTGGAAATGTAATACTGCGAGGCATTCCCAAGAGT
ACTGGTACATCTGGTCTCGAGGGACTATTCATCCAGTCCTGGTGAACTGA
TGACTACTCCGTATACCGTCGCTTGAACGAAATGTCGAAAATCATTTCAA
AAATCGCCAGGTGGGTCTGGATGCAGCTGGTAAGACGACGATTCTTTACA
AGCTCAAGCTGGGCGAGGTGGTGACCACCATCCCCACCATCGGGTTCAAC
GTCGAGACTGTAGAATACAAGAACATTAGCTTCACAGGTGAGCATCATCT
AGCCTGTTTTTTGGTTTGAGAGAAGGTTGTTCCTCATGATTTGGACATGG
TACGAGTCCATCAGCGATGCTTGGACGCTACAATCTGTCGCTTCTAAATG
GCGATGGAAGGCCGCAACCCCGAAAAGCGAATACTTGTGTGCCTGTCACC
CAAGGGTACATAGAACTACCGCCAACTGGCGTTTCATGTTAGAATGTTCC
CGAATCGTTCTTTATATTGGTGTGCGTCGACCCACTACACAGTGATTCGT
ATTTGTCTGTCTTCCCCAGGCGGAATAAACTCCCAATTCCTCCGCAATTA
TTTATCGATGTAATCAATATGCACGTAGTCCTTGAGGTATTTGTTACCCT
ACTATGAGGAATGTTGTATTATTCCCGAAACCACACCCAACTCCGTATTG
GACCTATACCCATGGGTATTTTGAATACTCACCAACACAGTCTAGAGTTT
CAGTACTATTATTGGTGAAAATGTGTTATATTGAGCGTGCCAACTATTCT
TGAATGGACATCACGCAGGTCCTCAATGCAGTTGTGCTGTAGCTTGTTGG
CGATGCTTTTCGTCAGGGATGTTTTTCCTCTAATCCGTACGTCATACTGA
CGGCACTACTCGGACTTCGTGACAATTTATATGGGGAGGACTTGAGGTTC
AAGTTTTTTTTCTGGAGATGGCTGGAGCTGTATTTCATTGCGCTGTTCGC
ATGAGCGCTGCCATAATCATGTAACTTCCTTGAACGTTGACGTATTAGCA
GGTGCGGGTACAACGGACAGAGTCTCGGCGAGAGATGGTCTCACTGTGTG
ATCAACCCAAAAATATCCAATGGTGGGAATAATCAAATTATATACTGGAA
GGACTTTTAATTGCGGAAATAAACTCCCCCATCATGTCACTGTTTCCCAT
TCAACAGTTCATCTCATCGTTTTGTCTTGTTGGACGTTATAAGTGAAGTT
CCTTTGATATTTCGATTGTAATTCTCTCCCATGTGACGAATGCGACAGTT
TGGGACGTCGGAGGGCAGGATAAGATCCGGCCGCTCTGGAGGCACTACTA
CCAAAACACGCAGGGGTTGATCTTCGTGGTGGACTCGAATGACAGAGACC
GTGTTGACGCTGCACGAGATGAGCTGCACCGCATGCTTAACGAGGACGAG
CTTCGCGAATCTATTCTTCTCGTGTTCGCGAACAAGCAGGTGGGTTCAAG
CATTTTGTGATCGAAGTCCGATGCAAACCCTGGTCGTGTATCGTGAGCAC
GGATGTGTTGTATATTTATAGATTTATGTATGAGGCTTGATCGGACCTTA
CTCAAGTGCCATCTTTTGCTTAATCTTGAACGTCGGTCGTTCAAAGATTT
CAGTATTCGAGGATGTCAAAAGCTCCGAAATCCATGTAATCAAAGAGAGA
CTAAGGTGATGATCCCAGTTGGAAGAACGTGGCATTAGATTAATTCCTCG
CCTCATACTCTGAAGTCGGACATGCGATTCACACTCGAGGAATGCCGCGT
TTTGCTGGAAACAACACCTCAATCGTTCTTGGTCAAAATCAGCACCTTAG
TCATGACTACTCACTGTTCGATGTGAGCGCCCATAGTCGAAATGATCGAG
TGTGGGTCACCCACAAACAAGAAAGTCGAAATTCGAAACGCAAGAACTCA
TATATCCAATTGCTTCGATCTCGCTTGTCAGGACCTGCCTAACGCCATGT
CGGCGGCAGAGATGACGGACAAGTTGGGTCTCCATGGACTTCGCCACCGG
CAATGGTATATTCAGGCATGCTGTGCCACAACTGGAGACGGTCTCTACGA
GGGCCTTGACTGGCTCTCGGCCACGCTACAGAAGAGGAAGTGAAGAATGT
AACCTAGCCGCGAGTAGACCAACGGCGTAAAAACCATTTGTGTGTTTCAG
GTGTCGGAGGTTCCATTCCATCGGTACCTGCATTGGGGTGTGGGGACTTC
GAGCTTGTCCGTTGGGAAAGGATGGATATGGTAACGATCAAGCTCCTCCA
CGGGATTTATCTTTTTGCCCAGCCTCTTATAGCGTTACTTCGTGCTCATT
TTGACTGAAACGGTCAGTGGAGGCATGTGAGGAGTCATGTCTTTCTCGGG
GTGGGATAGTCTTGGCGCACGAGGTACTGCATTATTTCTGTACTACGCTT
GATTACGGCAGGCATTGTTTTGTAAAGGCTGAAGAGGAAAGCAAACCGAA
TTTCTAGGACGTAACATATAAAGGAGAAACGAGAGGTGCACCCTTCGCGC
AGCTGTGGAAGATGGCCGCAGGACAACTGTAAGGTGTAAGGTGTTTTCCG
TTTGTCCCTCGAACGTTACAATTGTTGGAACTTACGTGCGACGCCAGGTC
GGGCTGATGTTGGGGAGAACCAAAGAGGATCTAGGTGTGTACGTAAAATA
GCCTGCAGCAGGGTGTCCGTTACTCGTGTTGACTTTGGATCCTGATGTTC
AAAAGACTTGAATCTCGGGTTTTCCCGTGTCAATCGCAGTTGACAATATC
AGGGAAAAGGCGCGTGCCGCCATGATAGGTGGGCACTGCCGAGGGCGAAA
TGGTGATGCCACAGAATGCTCTTTTTAAATCTATTTACACAGTTACTCAT
GATCCATAAAGCACAATATGGTAACCCAGTTAGCGGTTTTCGAACTGTGG
TTGATATGAGCACAGCTGAGTAAGTATATGTTACGGCCTAATCGTCCCGC
GGAAGATGAAACGGGCAAAACAGTACAAGGTGGTAATCTCTGCAATAAGG
CACGTTGGGCATCTTCAATTTGAAATCAACGATGCAATACCGTAGAAATG
GTCCTTGTCACTATGGTAGATTATTGTATGCCCACAGAAGTCGCTTGACA
AGAGGGTAATATAATTTTTGGGGCGAAAGATGGTTGTATCACTGTGGTAA
TATGGATAATCAGCCCAAATGGGTAGGATACGGCTGTTTTGCCGATGACT
AGACGCAAGTGTGATAAAAGGGTTTTAACGGGTGAGGATTCTGCTTCTCA
AAGGGCAGTCTAAAACCGTATGTTAAAACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2128:212..5242-

>mRNA_H-paniculata_contig2128.5580.1 ID=mRNA_H-paniculata_contig2128.5580.1|Name=mRNA_H-paniculata_contig2128.5580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig2128:212..5242- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATTTCTGGTTTCCATCTTGTGCGGTCTCATTCTCATCACATTATT
CGCCTCCTGCTTGATCGCCTGCGCTGTCTTTTTACTTCTCTGGTGCTTCG
AAGGCGGAACTATGGGGCTCGCTTTCTCTCGACTGTGGGACCGTATGTTC
GGGAAGAAGGAGATGCGTATTCTGATGATGCCATTTCTGGTTTCCATCTT
GTGCGGTCTCATTCTCATCACATTATTCGCCTCCTGCTTGATCGCCTGCG
CTGTCTTTTTACTTCTCTGGTGCTTCGAAGGCGGAACTATGGGGCTCGCT
TTCTCTCGACTGTGGGACCGTATGTTCGGGAAGAAGGAGATGCGTATTCT
GATGGTGGGTCTGGATGCAGCTGGTAAGACGACGATTCTTTACAAGCTCA
AGCTGGGCGAGGTGGTGACCACCATCCCCACCATCGGGTTCAACGTCGAG
ACTGTAGAATACAAGAACATTAGCTTCACAGGTGGGTCTGGATGCAGCTG
GTAAGACGACGATTCTTTACAAGCTCAAGCTGGGCGAGGTGGTGACCACC
ATCCCCACCATCGGGTTCAACGTCGAGACTGTAGAATACAAGAACATTAG
CTTCACAGTTTGGGACGTCGGAGGGCAGGATAAGATCCGGCCGCTCTGGA
GGCACTACTACCAAAACACGCAGGGGTTGATCTTCGTGGTGGACTCGAAT
GACAGAGACCGTGTTGACGCTGCACGAGATGAGCTGCACCGCATGCTTAA
CGAGGACGAGCTTCGCGAATCTATTCTTCTCGTGTTCGCGAACAAGCAGT
TTGGGACGTCGGAGGGCAGGATAAGATCCGGCCGCTCTGGAGGCACTACT
ACCAAAACACGCAGGGGTTGATCTTCGTGGTGGACTCGAATGACAGAGAC
CGTGTTGACGCTGCACGAGATGAGCTGCACCGCATGCTTAACGAGGACGA
GCTTCGCGAATCTATTCTTCTCGTGTTCGCGAACAAGCAGGACCTGCCTA
ACGCCATGTCGGCGGCAGAGATGACGGACAAGTTGGGTCTCCATGGACTT
CGCCACCGGCAATGGTATATTCAGGCATGCTGTGCCACAACTGGAGACGG
TCTCTACGAGGGCCTTGACTGGCTCTCGGCCACGCTACAGAAGAGGAAGT
GAGACCTGCCTAACGCCATGTCGGCGGCAGAGATGACGGACAAGTTGGGT
CTCCATGGACTTCGCCACCGGCAATGGTATATTCAGGCATGCTGTGCCAC
AACTGGAGACGGTCTCTACGAGGGCCTTGACTGGCTCTCGGCCACGCTAC
AGAAGAGGAAGTGA
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